RNA–Protein interactions for RNA: ENST00000524646.1

PKP3-202, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 312 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-202ENST00000524646 U2AF1Q01081 240 aaKnown RBP eCLIP11.45□□□□□ -0.58
PKP3-202ENST00000524646 IDI1Q13907 227 aa11.45□□□□□ -0.58
PKP3-202ENST00000524646 TOPAZ1Q8N9V7 1692 aa11.45□□□□□ -0.58
PKP3-202ENST00000524646 A2ML1A8K2U0 1454 aa11.44□□□□□ -0.58
PKP3-202ENST00000524646 CDK12Q9NYV4 1490 aaPredicted RBP11.44□□□□□ -0.58
PKP3-202ENST00000524646 FAM135BQ49AJ0 1406 aa11.44□□□□□ -0.58
PKP3-202ENST00000524646 IL16Q14005 1332 aa11.44□□□□□ -0.58
PKP3-202ENST00000524646 NEUROD2Q15784 382 aa11.44□□□□□ -0.58
PKP3-202ENST00000524646 NUTM2DQ5VT03 806 aaPredicted RBP11.44□□□□□ -0.58
PKP3-202ENST00000524646 FRAT1Q92837 279 aaPredicted RBP11.44□□□□□ -0.58
PKP3-202ENST00000524646 TERF2IPQ9NYB0 399 aa11.44□□□□□ -0.58
PKP3-202ENST00000524646 USP19O94966 1318 aa11.43□□□□□ -0.58
PKP3-202ENST00000524646 RLBP1P12271 317 aa11.43□□□□□ -0.58
PKP3-202ENST00000524646 SRPK2P78362 688 aaKnown RBP11.43□□□□□ -0.58
PKP3-202ENST00000524646 PNPLA6Q8IY17 1366 aa11.42□□□□□ -0.58
PKP3-202ENST00000524646 MVPQ14764 893 aaKnown RBP11.42□□□□□ -0.58
PKP3-202ENST00000524646 ZKSCAN2Q63HK3 967 aa11.42□□□□□ -0.58
PKP3-202ENST00000524646 TNNQ9UQP3 1299 aa11.42□□□□□ -0.58
PKP3-202ENST00000524646 NALCNQ8IZF0 1738 aa11.42□□□□□ -0.58
PKP3-202ENST00000524646 FMN2Q9NZ56 1722 aa11.42□□□□□ -0.58
PKP3-202ENST00000524646 PPIP5K1Q6PFW1 1433 aa11.42□□□□□ -0.58
PKP3-202ENST00000524646 MINK1Q8N4C8 1332 aaPredicted RBP11.41□□□□□ -0.58
PKP3-202ENST00000524646 NFKBIBQ15653 356 aa11.41□□□□□ -0.58
PKP3-202ENST00000524646 PLEKHF1Q96S99 279 aa11.41□□□□□ -0.58
PKP3-202ENST00000524646 KIF13AQ9H1H9 1805 aa11.41□□□□□ -0.58
PKP3-202ENST00000524646 RIMS2Q9UQ26 1411 aa11.41□□□□□ -0.58
PKP3-202ENST00000524646 TMPOP42166 694 aaKnown RBP11.4□□□□□ -0.58
PKP3-202ENST00000524646 SAFB2Q14151 953 aaKnown RBP eCLIP11.4□□□□□ -0.58
PKP3-202ENST00000524646 HDGFL2Q7Z4V5 671 aaPredicted RBP11.4□□□□□ -0.58
PKP3-202ENST00000524646 PRAM1Q96QH2 718 aa11.4□□□□□ -0.58
PKP3-202ENST00000524646 BCL2L13Q9BXK5 485 aa11.4□□□□□ -0.58
PKP3-202ENST00000524646 GGNBP2Q9H3C7 697 aa11.4□□□□□ -0.58
PKP3-202ENST00000524646 RWDD1Q9H446 243 aaPredicted RBP11.4□□□□□ -0.58
PKP3-202ENST00000524646 STK26Q9P289 416 aa11.4□□□□□ -0.58
PKP3-202ENST00000524646 PCDHB15Q9Y5E8 787 aa11.4□□□□□ -0.58
PKP3-202ENST00000524646 UBR1Q8IWV7 1749 aa11.4□□□□□ -0.58
PKP3-202ENST00000524646 U2SURPO15042 1029 aaKnown RBP11.39□□□□□ -0.59
PKP3-202ENST00000524646 SLC4A3P48751 1232 aa11.39□□□□□ -0.59
PKP3-202ENST00000524646 EDC4Q6P2E9 1401 aaKnown RBP11.39□□□□□ -0.59
PKP3-202ENST00000524646 FTSJ3Q8IY81 847 aaKnown RBP11.39□□□□□ -0.59
PKP3-202ENST00000524646 DZIP1LQ8IYY4 767 aaKnown RBP11.39□□□□□ -0.59
PKP3-202ENST00000524646 SMC4Q9NTJ3 1288 aa11.39□□□□□ -0.59
PKP3-202ENST00000524646 POGKQ9P215 609 aa11.39□□□□□ -0.59
PKP3-202ENST00000524646 PDZRN3Q9UPQ7 1066 aa11.39□□□□□ -0.59
PKP3-202ENST00000524646 RIMS1Q86UR5 1692 aaKnown RBP11.39□□□□□ -0.59
PKP3-202ENST00000524646 KIF16BQ96L93 1317 aa11.38□□□□□ -0.59
PKP3-202ENST00000524646 BECN1Q14457 450 aa11.38□□□□□ -0.59
PKP3-202ENST00000524646 TSR2Q969E8 191 aaKnown RBP11.38□□□□□ -0.59
PKP3-202ENST00000524646 PNNQ9H307 717 aaKnown RBP11.38□□□□□ -0.59
PKP3-202ENST00000524646 TRIM35Q9UPQ4 493 aa11.38□□□□□ -0.59
PKP3-202ENST00000524646 TECPR2O15040 1411 aa11.37□□□□□ -0.59
PKP3-202ENST00000524646 PTCH1Q13635 1447 aa11.37□□□□□ -0.59
PKP3-202ENST00000524646 FYB1O15117 783 aa11.37□□□□□ -0.59
PKP3-202ENST00000524646 DIAPH1O60610 1272 aaKnown RBP11.37□□□□□ -0.59
PKP3-202ENST00000524646 EXOSC9Q06265 439 aaKnown RBP11.37□□□□□ -0.59
PKP3-202ENST00000524646 UPF2Q9HAU5 1272 aaKnown RBP11.37□□□□□ -0.59
PKP3-202ENST00000524646 CPSF1Q10570 1443 aaKnown RBP11.36□□□□□ -0.59
PKP3-202ENST00000524646 RGPD1P0DJD0 1748 aa11.36□□□□□ -0.59
PKP3-202ENST00000524646 HDAC1Q13547 482 aaPredicted RBP11.36□□□□□ -0.59
PKP3-202ENST00000524646 TBC1D32Q96NH3 1257 aa11.36□□□□□ -0.59
PKP3-202ENST00000524646 DDX19BQ9UMR2 479 aa11.36□□□□□ -0.59
PKP3-202ENST00000524646 PPP6R1Q9UPN7 881 aa11.36□□□□□ -0.59
PKP3-202ENST00000524646 TRIM27P14373 513 aa11.35□□□□□ -0.59
PKP3-202ENST00000524646 PIK3R4Q99570 1358 aa11.34□□□□□ -0.59
PKP3-202ENST00000524646 SEC24BO95487 1268 aa11.34□□□□□ -0.59
PKP3-202ENST00000524646 GSE1Q14687 1217 aa11.34□□□□□ -0.59
PKP3-202ENST00000524646 ATF7IPQ6VMQ6 1270 aa11.34□□□□□ -0.59
PKP3-202ENST00000524646 SSH1Q8WYL5 1049 aa11.34□□□□□ -0.59
PKP3-202ENST00000524646 CDK19Q9BWU1 502 aa11.34□□□□□ -0.59
PKP3-202ENST00000524646 N4BP2Q86UW6 1770 aaPredicted RBP11.33□□□□□ -0.59
PKP3-202ENST00000524646 AATKQ6ZMQ8 1374 aa11.33□□□□□ -0.6
PKP3-202ENST00000524646 ALDH1L2Q3SY69 923 aa11.33□□□□□ -0.6
PKP3-202ENST00000524646 ITPRIPQ8IWB1 547 aa11.33□□□□□ -0.6
PKP3-202ENST00000524646 RSPH6AQ9H0K4 717 aa11.33□□□□□ -0.6
PKP3-202ENST00000524646 RIPK4P57078 832 aa11.32□□□□□ -0.6
PKP3-202ENST00000524646 FBXO31Q5XUX0 539 aaPredicted RBP11.32□□□□□ -0.6
PKP3-202ENST00000524646 ZNF428Q96B54 188 aa11.32□□□□□ -0.6
PKP3-202ENST00000524646 PEAK1Q9H792 1746 aa11.32□□□□□ -0.6
PKP3-202ENST00000524646 IPO8O15397 1037 aaKnown RBP11.31□□□□□ -0.6
PKP3-202ENST00000524646 FRAT2O75474 233 aaPredicted RBP11.31□□□□□ -0.6
PKP3-202ENST00000524646 FCHSD2O94868 740 aa11.31□□□□□ -0.6
PKP3-202ENST00000524646 SMC5Q8IY18 1101 aa11.31□□□□□ -0.6
PKP3-202ENST00000524646 STAG3Q9UJ98 1225 aa11.31□□□□□ -0.6
PKP3-202ENST00000524646 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.31□□□□□ -0.6
PKP3-202ENST00000524646 PRKAR2BP31323 418 aa11.3□□□□□ -0.6
PKP3-202ENST00000524646 BRPF1P55201 1214 aaPredicted RBP11.3□□□□□ -0.6
PKP3-202ENST00000524646 CALD1Q05682 793 aaKnown RBP11.3□□□□□ -0.6
PKP3-202ENST00000524646 NFE2L2Q16236 605 aa11.3□□□□□ -0.6
PKP3-202ENST00000524646 TMEM57Q8N5G2 664 aa11.3□□□□□ -0.6
PKP3-202ENST00000524646 CABP1Q9NZU7 370 aa11.3□□□□□ -0.6
PKP3-202ENST00000524646 NOB1Q9ULX3 412 aaKnown RBP11.3□□□□□ -0.6
PKP3-202ENST00000524646 USP54Q70EL1 1684 aa11.3□□□□□ -0.6
PKP3-202ENST00000524646 FAM208AQ9UK61 1670 aaKnown RBP11.3□□□□□ -0.6
PKP3-202ENST00000524646 LRRC37A3O60309 1634 aa11.29□□□□□ -0.6
PKP3-202ENST00000524646 NCOA3Q9Y6Q9 1424 aa11.28□□□□□ -0.6
PKP3-202ENST00000524646 SENP3Q9H4L4 574 aaPredicted RBP11.28□□□□□ -0.6
PKP3-202ENST00000524646 ANTXR1Q9H6X2 564 aa11.28□□□□□ -0.6
PKP3-202ENST00000524646 ZBTB40Q9NUA8 1239 aa11.28□□□□□ -0.6
PKP3-202ENST00000524646 POLKQ9UBT6 870 aa11.28□□□□□ -0.6
PKP3-202ENST00000524646 LMOD3Q0VAK6 560 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms