RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 ZKSCAN2Q63HK3 967 aa14.17□□□□□ -0.14
HDAC9-228ENST00000524023 TSR2Q969E8 191 aaKnown RBP14.17□□□□□ -0.14
HDAC9-228ENST00000524023 RWDD1Q9H446 243 aaPredicted RBP14.17□□□□□ -0.14
HDAC9-228ENST00000524023 POGKQ9P215 609 aa14.17□□□□□ -0.14
HDAC9-228ENST00000524023 TRIM35Q9UPQ4 493 aa14.17□□□□□ -0.14
HDAC9-228ENST00000524023 PDZRN3Q9UPQ7 1066 aa14.17□□□□□ -0.14
HDAC9-228ENST00000524023 ALKQ9UM73 1620 aa14.16□□□□□ -0.14
HDAC9-228ENST00000524023 EXOSC9Q06265 439 aaKnown RBP14.16□□□□□ -0.14
HDAC9-228ENST00000524023 DZIP1LQ8IYY4 767 aaKnown RBP14.16□□□□□ -0.14
HDAC9-228ENST00000524023 FTSJ3Q8IY81 847 aaKnown RBP14.15□□□□□ -0.14
HDAC9-228ENST00000524023 IL16Q14005 1332 aa14.15□□□□□ -0.14
HDAC9-228ENST00000524023 KIF20BQ96Q89 1820 aa14.15□□□□□ -0.14
HDAC9-228ENST00000524023 FBXO31Q5XUX0 539 aaPredicted RBP14.15□□□□□ -0.15
HDAC9-228ENST00000524023 ARHGEF40Q8TER5 1519 aa14.14□□□□□ -0.15
HDAC9-228ENST00000524023 HDGFL2Q7Z4V5 671 aaPredicted RBP14.14□□□□□ -0.15
HDAC9-228ENST00000524023 CDK19Q9BWU1 502 aa14.14□□□□□ -0.15
HDAC9-228ENST00000524023 SMC4Q9NTJ3 1288 aa14.14□□□□□ -0.15
HDAC9-228ENST00000524023 PNPLA6Q8IY17 1366 aa14.14□□□□□ -0.15
HDAC9-228ENST00000524023 DIAPH1O60610 1272 aaKnown RBP14.13□□□□□ -0.15
HDAC9-228ENST00000524023 GSE1Q14687 1217 aa14.13□□□□□ -0.15
HDAC9-228ENST00000524023 RIPK4P57078 832 aa14.12□□□□□ -0.15
HDAC9-228ENST00000524023 SSH1Q8WYL5 1049 aa14.12□□□□□ -0.15
HDAC9-228ENST00000524023 TRIM27P14373 513 aa14.12□□□□□ -0.15
HDAC9-228ENST00000524023 PNNQ9H307 717 aaKnown RBP14.12□□□□□ -0.15
HDAC9-228ENST00000524023 CABP1Q9NZU7 370 aa14.12□□□□□ -0.15
HDAC9-228ENST00000524023 FRAT2O75474 233 aaPredicted RBP14.1□□□□□ -0.15
HDAC9-228ENST00000524023 BECN1Q14457 450 aa14.1□□□□□ -0.15
HDAC9-228ENST00000524023 ATF7IPQ6VMQ6 1270 aa14.1□□□□□ -0.15
HDAC9-228ENST00000524023 CDC42BPGQ6DT37 1551 aa14.1□□□□□ -0.15
HDAC9-228ENST00000524023 STAG3Q9UJ98 1225 aa14.1□□□□□ -0.15
HDAC9-228ENST00000524023 DDX19BQ9UMR2 479 aa14.1□□□□□ -0.15
HDAC9-228ENST00000524023 UPF2Q9HAU5 1272 aaKnown RBP14.09□□□□□ -0.15
HDAC9-228ENST00000524023 HDAC1Q13547 482 aaPredicted RBP14.09□□□□□ -0.15
HDAC9-228ENST00000524023 TBC1D32Q96NH3 1257 aa14.09□□□□□ -0.15
HDAC9-228ENST00000524023 NOB1Q9ULX3 412 aaKnown RBP14.09□□□□□ -0.15
HDAC9-228ENST00000524023 DLC1Q96QB1 1528 aa14.09□□□□□ -0.15
HDAC9-228ENST00000524023 LRRC7Q96NW7 1537 aa14.08□□□□□ -0.16
HDAC9-228ENST00000524023 FCHSD2O94868 740 aa14.08□□□□□ -0.16
HDAC9-228ENST00000524023 ITPRIPQ8IWB1 547 aa14.08□□□□□ -0.16
HDAC9-228ENST00000524023 ATP7BP35670 1465 aa14.07□□□□□ -0.16
HDAC9-228ENST00000524023 SETD1AO15047 1707 aaKnown RBP14.07□□□□□ -0.16
HDAC9-228ENST00000524023 MAP2P11137 1827 aaKnown RBP14.06□□□□□ -0.16
HDAC9-228ENST00000524023 RSPH6AQ9H0K4 717 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 POLKQ9UBT6 870 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 FAM135BQ49AJ0 1406 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 A2ML1A8K2U0 1454 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 REREQ9P2R6 1566 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 ALDH1L2Q3SY69 923 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 WAPLQ7Z5K2 1190 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.06□□□□□ -0.16
HDAC9-228ENST00000524023 TMEM57Q8N5G2 664 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 PPP6R1Q9UPN7 881 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 KIF16BQ96L93 1317 aa14.06□□□□□ -0.16
HDAC9-228ENST00000524023 RIMBP3CA6NJZ7 1639 aa14.05□□□□□ -0.16
HDAC9-228ENST00000524023 RIMBP3BA6NNM3 1639 aa14.05□□□□□ -0.16
HDAC9-228ENST00000524023 IPO8O15397 1037 aaKnown RBP14.05□□□□□ -0.16
HDAC9-228ENST00000524023 RIMBP3Q9UFD9 1639 aa14.05□□□□□ -0.16
HDAC9-228ENST00000524023 AGLP35573 1532 aa14.05□□□□□ -0.16
HDAC9-228ENST00000524023 PRKAR2BP31323 418 aa14.05□□□□□ -0.16
HDAC9-228ENST00000524023 IL27Q8NEV9 243 aa14.05□□□□□ -0.16
HDAC9-228ENST00000524023 ZBTB40Q9NUA8 1239 aa14.05□□□□□ -0.16
HDAC9-228ENST00000524023 SPATA31D1Q6ZQQ2 1576 aa14.04□□□□□ -0.16
HDAC9-228ENST00000524023 RIMS2Q9UQ26 1411 aa14.04□□□□□ -0.16
HDAC9-228ENST00000524023 FBLN1P23142 703 aa14.04□□□□□ -0.16
HDAC9-228ENST00000524023 SMC5Q8IY18 1101 aa14.04□□□□□ -0.16
HDAC9-228ENST00000524023 PPIP5K1Q6PFW1 1433 aa14.03□□□□□ -0.16
HDAC9-228ENST00000524023 FAM69CQ0P6D2 419 aa14.03□□□□□ -0.16
HDAC9-228ENST00000524023 CYB5RLQ6IPT4 315 aa14.03□□□□□ -0.16
HDAC9-228ENST00000524023 TBC1D2Q9BYX2 928 aa14.02□□□□□ -0.16
HDAC9-228ENST00000524023 SLKQ9H2G2 1235 aaPredicted RBP14.02□□□□□ -0.16
HDAC9-228ENST00000524023 ANTXR1Q9H6X2 564 aa14.02□□□□□ -0.16
HDAC9-228ENST00000524023 DIP2BQ9P265 1576 aa14.02□□□□□ -0.17
HDAC9-228ENST00000524023 BRPF1P55201 1214 aaPredicted RBP14.02□□□□□ -0.17
HDAC9-228ENST00000524023 NFE2L2Q16236 605 aa14.02□□□□□ -0.17
HDAC9-228ENST00000524023 ZNF428Q96B54 188 aa14.02□□□□□ -0.17
HDAC9-228ENST00000524023 TSPOAP1O95153 1857 aa14.02□□□□□ -0.17
HDAC9-228ENST00000524023 PHACTR3Q96KR7 559 aa14.01□□□□□ -0.17
HDAC9-228ENST00000524023 CPSF1Q10570 1443 aaKnown RBP14.01□□□□□ -0.17
HDAC9-228ENST00000524023 EDC4Q6P2E9 1401 aaKnown RBP14□□□□□ -0.17
HDAC9-228ENST00000524023 NRXN3Q9Y4C0 1643 aa14□□□□□ -0.17
HDAC9-228ENST00000524023 HMOX1P09601 288 aa14□□□□□ -0.17
HDAC9-228ENST00000524023 EMILIN1Q9Y6C2 1016 aa14□□□□□ -0.17
HDAC9-228ENST00000524023 WASLO00401 505 aaPredicted RBP13.99□□□□□ -0.17
HDAC9-228ENST00000524023 IL13P35225 146 aa13.99□□□□□ -0.17
HDAC9-228ENST00000524023 C22orf23Q9BZE7 217 aa13.99□□□□□ -0.17
HDAC9-228ENST00000524023 AEBP2Q6ZN18 517 aaPredicted RBP13.99□□□□□ -0.17
HDAC9-228ENST00000524023 VAMP4O75379 141 aa13.98□□□□□ -0.17
HDAC9-228ENST00000524023 NUCB1Q02818 461 aa13.98□□□□□ -0.17
HDAC9-228ENST00000524023 CALD1Q05682 793 aaKnown RBP13.98□□□□□ -0.17
HDAC9-228ENST00000524023 NME9Q86XW9 330 aa13.98□□□□□ -0.17
HDAC9-228ENST00000524023 CDK12Q9NYV4 1490 aaPredicted RBP13.98□□□□□ -0.17
HDAC9-228ENST00000524023 AATKQ6ZMQ8 1374 aa13.98□□□□□ -0.17
HDAC9-228ENST00000524023 MFAP1P55081 439 aaKnown RBP13.98□□□□□ -0.17
HDAC9-228ENST00000524023 THUMPD2Q9BTF0 503 aaKnown RBP13.98□□□□□ -0.17
HDAC9-228ENST00000524023 BRPF3Q9ULD4 1205 aa13.98□□□□□ -0.17
HDAC9-228ENST00000524023 GNAI1P63096 354 aa13.97□□□□□ -0.17
HDAC9-228ENST00000524023 MRPL50Q8N5N7 158 aaKnown RBP13.97□□□□□ -0.17
HDAC9-228ENST00000524023 ARHGAP45Q92619 1136 aa13.97□□□□□ -0.17
HDAC9-228ENST00000524023 IFT57Q9NWB7 429 aa13.97□□□□□ -0.17
HDAC9-228ENST00000524023 DLG5Q8TDM6 1919 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms