RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 AMHR2Q16671 573 aa7.28□□□□□ -1.24
HMGB1P41-201ENST00000520234 METTL3Q86U44 580 aaKnown RBP7.28□□□□□ -1.24
HMGB1P41-201ENST00000520234 SCARF2Q96GP6 870 aaPredicted RBP7.28□□□□□ -1.24
HMGB1P41-201ENST00000520234 CNTNAP3BQ96NU0 1288 aa7.28□□□□□ -1.24
HMGB1P41-201ENST00000520234 CNTNAP3Q9BZ76 1288 aa7.28□□□□□ -1.24
HMGB1P41-201ENST00000520234 DAXXQ9UER7 740 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P41-201ENST00000520234 MAN1A2O60476 641 aa7.26□□□□□ -1.25
HMGB1P41-201ENST00000520234 BRPF1P55201 1214 aaPredicted RBP7.26□□□□□ -1.25
HMGB1P41-201ENST00000520234 MARSP56192 900 aaKnown RBP7.26□□□□□ -1.25
HMGB1P41-201ENST00000520234 Q8N3U1 123 aa7.26□□□□□ -1.25
HMGB1P41-201ENST00000520234 USB1Q9BQ65 265 aaKnown RBP7.26□□□□□ -1.25
HMGB1P41-201ENST00000520234 DDX11L8A8MPP1 907 aa7.25□□□□□ -1.25
HMGB1P41-201ENST00000520234 NEUROD2Q15784 382 aa7.25□□□□□ -1.25
HMGB1P41-201ENST00000520234 ARHGEF15O94989 841 aa7.24□□□□□ -1.25
HMGB1P41-201ENST00000520234 CLCN1P35523 988 aa7.24□□□□□ -1.25
HMGB1P41-201ENST00000520234 SULF1Q8IWU6 871 aa7.24□□□□□ -1.25
HMGB1P41-201ENST00000520234 SPOCK3Q9BQ16 436 aa7.24□□□□□ -1.25
HMGB1P41-201ENST00000520234 TTLL12Q14166 644 aaPredicted RBP7.23□□□□□ -1.25
HMGB1P41-201ENST00000520234 PHOX2BQ99453 314 aa7.23□□□□□ -1.25
HMGB1P41-201ENST00000520234 LCE3BQ5TA77 95 aa7.22□□□□□ -1.25
HMGB1P41-201ENST00000520234 GPR161Q8N6U8 529 aaKnown RBP7.22□□□□□ -1.25
HMGB1P41-201ENST00000520234 GPCPD1Q9NPB8 672 aa7.22□□□□□ -1.25
HMGB1P41-201ENST00000520234 ADH1CP00326 375 aa7.21□□□□□ -1.26
HMGB1P41-201ENST00000520234 SLURP2P0DP57 97 aa7.21□□□□□ -1.26
HMGB1P41-201ENST00000520234 TIMP2P16035 220 aa7.21□□□□□ -1.26
HMGB1P41-201ENST00000520234 MDM2Q00987 491 aaPredicted RBP7.21□□□□□ -1.26
HMGB1P41-201ENST00000520234 NNTQ13423 1086 aa7.21□□□□□ -1.26
HMGB1P41-201ENST00000520234 PLA2G4EQ3MJ16 856 aa7.21□□□□□ -1.26
HMGB1P41-201ENST00000520234 PARP9Q8IXQ6 854 aa7.21□□□□□ -1.26
HMGB1P41-201ENST00000520234 COL25A1Q9BXS0 654 aaPredicted RBP7.21□□□□□ -1.26
HMGB1P41-201ENST00000520234 PLEKHG3A1L390 1219 aa7.2□□□□□ -1.26
HMGB1P41-201ENST00000520234 K7ELQ4 463 aaPredicted RBP7.2□□□□□ -1.26
HMGB1P41-201ENST00000520234 KDM4CQ9H3R0 1056 aa7.2□□□□□ -1.26
HMGB1P41-201ENST00000520234 GIGYF2Q6Y7W6 1299 aaKnown RBP7.19□□□□□ -1.26
HMGB1P41-201ENST00000520234 MPNDQ8N594 471 aa7.19□□□□□ -1.26
HMGB1P41-201ENST00000520234 GPBP1L1Q9HC44 474 aaPredicted RBP7.19□□□□□ -1.26
HMGB1P41-201ENST00000520234 WDR4P57081 412 aaKnown RBP7.18□□□□□ -1.26
HMGB1P41-201ENST00000520234 WHAMMQ8TF30 809 aa7.18□□□□□ -1.26
HMGB1P41-201ENST00000520234 TLL2Q9Y6L7 1015 aa7.18□□□□□ -1.26
HMGB1P41-201ENST00000520234 PROCP04070 461 aa7.17□□□□□ -1.26
HMGB1P41-201ENST00000520234 GALNT6Q8NCL4 622 aa7.17□□□□□ -1.26
HMGB1P41-201ENST00000520234 FAM217BQ9NTX9 383 aaPredicted RBP7.17□□□□□ -1.26
HMGB1P41-201ENST00000520234 SSTR3P32745 418 aaPredicted RBP7.16□□□□□ -1.26
HMGB1P41-201ENST00000520234 SH3BP2P78314 561 aa7.16□□□□□ -1.26
HMGB1P41-201ENST00000520234 NLRP7Q8WX94 980 aa7.16□□□□□ -1.26
HMGB1P41-201ENST00000520234 NANOS1Q8WY41 292 aaKnown RBP7.16□□□□□ -1.26
HMGB1P41-201ENST00000520234 DDRGK1Q96HY6 314 aa7.16□□□□□ -1.26
HMGB1P41-201ENST00000520234 JUNDP17535 347 aa7.15□□□□□ -1.26
HMGB1P41-201ENST00000520234 TMEM132AQ24JP5 1023 aa7.15□□□□□ -1.26
HMGB1P41-201ENST00000520234 RNFT1Q5M7Z0 435 aa7.15□□□□□ -1.26
HMGB1P41-201ENST00000520234 KLF16Q9BXK1 252 aaPredicted RBP7.15□□□□□ -1.26
HMGB1P41-201ENST00000520234 ITGB2P05107 769 aa7.14□□□□□ -1.27
HMGB1P41-201ENST00000520234 C6orf118Q5T5N4 469 aa7.14□□□□□ -1.27
HMGB1P41-201ENST00000520234 DCAF5Q96JK2 942 aa7.14□□□□□ -1.27
HMGB1P41-201ENST00000520234 KRTAP4-12Q9BQ66 201 aa7.14□□□□□ -1.27
HMGB1P41-201ENST00000520234 BTBD11A6QL63 1104 aa7.13□□□□□ -1.27
HMGB1P41-201ENST00000520234 MS4A1P11836 297 aa7.13□□□□□ -1.27
HMGB1P41-201ENST00000520234 PTCRAQ6ISU1 281 aaPredicted RBP7.13□□□□□ -1.27
HMGB1P41-201ENST00000520234 NUDT12Q9BQG2 462 aa7.13□□□□□ -1.27
HMGB1P41-201ENST00000520234 PHF20L1A8MW92 1017 aa7.12□□□□□ -1.27
HMGB1P41-201ENST00000520234 UPP2O95045 317 aa7.12□□□□□ -1.27
HMGB1P41-201ENST00000520234 VARSP26640 1264 aaKnown RBP7.12□□□□□ -1.27
HMGB1P41-201ENST00000520234 FAM117AQ9C073 453 aa7.12□□□□□ -1.27
HMGB1P41-201ENST00000520234 DNMT3LQ9UJW3 386 aa7.12□□□□□ -1.27
HMGB1P41-201ENST00000520234 SOS2Q07890 1332 aaPredicted RBP7.11□□□□□ -1.27
HMGB1P41-201ENST00000520234 BMP2P12643 396 aa7.11□□□□□ -1.27
HMGB1P41-201ENST00000520234 CD46P15529 392 aa7.11□□□□□ -1.27
HMGB1P41-201ENST00000520234 MAP3K10Q02779 954 aa7.11□□□□□ -1.27
HMGB1P41-201ENST00000520234 IL27Q8NEV9 243 aa7.11□□□□□ -1.27
HMGB1P41-201ENST00000520234 BEGAINQ9BUH8 593 aa7.11□□□□□ -1.27
HMGB1P41-201ENST00000520234 DIXDC1Q155Q3 683 aa7.1□□□□□ -1.27
HMGB1P41-201ENST00000520234 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.1□□□□□ -1.27
HMGB1P41-201ENST00000520234 RSPH6AQ9H0K4 717 aa7.1□□□□□ -1.27
HMGB1P41-201ENST00000520234 ZIC2O95409 532 aaPredicted RBP7.09□□□□□ -1.27
HMGB1P41-201ENST00000520234 LINC00528Q8N1L1 170 aa7.09□□□□□ -1.27
HMGB1P41-201ENST00000520234 KRTAP9-9Q9BYP9 154 aa7.08□□□□□ -1.28
HMGB1P41-201ENST00000520234 KRTAP9-4Q9BYQ2 154 aa7.08□□□□□ -1.28
HMGB1P41-201ENST00000520234 GOPCQ9HD26 462 aa7.08□□□□□ -1.28
HMGB1P41-201ENST00000520234 ENAMQ9NRM1 1142 aa7.08□□□□□ -1.28
HMGB1P41-201ENST00000520234 PTSQ03393 145 aa7.07□□□□□ -1.28
HMGB1P41-201ENST00000520234 ZFAND3Q9H8U3 227 aa7.07□□□□□ -1.28
HMGB1P41-201ENST00000520234 KDM4AO75164 1064 aa7.06□□□□□ -1.28
HMGB1P41-201ENST00000520234 USP46P62068 366 aa7.06□□□□□ -1.28
HMGB1P41-201ENST00000520234 NUTM1Q86Y26 1132 aa7.06□□□□□ -1.28
HMGB1P41-201ENST00000520234 KRTAP4-8A0A0G2JLE6 195 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 ADAMTS2O95450 1211 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 CCNYL3P0C7X3 344 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 BAG6P46379 1132 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 SH3D19Q5HYK7 790 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 LYPD4Q6UWN0 246 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 MEIOBQ8N635 442 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 CCDC155Q8N6L0 562 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 ITPKCQ96DU7 683 aa7.05□□□□□ -1.28
HMGB1P41-201ENST00000520234 LINC01559Q495D7 138 aa7.04□□□□□ -1.28
HMGB1P41-201ENST00000520234 PODNQ7Z5L7 613 aa7.04□□□□□ -1.28
HMGB1P41-201ENST00000520234 ZNF511Q8NB15 262 aa7.04□□□□□ -1.28
HMGB1P41-201ENST00000520234 SPIRE2Q8WWL2 714 aa7.04□□□□□ -1.28
HMGB1P41-201ENST00000520234 TBC1D2Q9BYX2 928 aa7.04□□□□□ -1.28
HMGB1P41-201ENST00000520234 UNC93B1Q9H1C4 597 aa7.04□□□□□ -1.28
HMGB1P41-201ENST00000520234 GJA5P36382 358 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms