RNA–Protein interactions for RNA: ENST00000520233.1

SDC2-205, Transcript of syndecan 2, humanhuman

TSL 4

Gene SDC2, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-205ENST00000520233 PXDNQ92626 1479 aa24.44■■□□□ 1.5
SDC2-205ENST00000520233 XPCQ01831 940 aaPredicted RBP24.43■■□□□ 1.5
SDC2-205ENST00000520233 KNSTRNQ9Y448 316 aa24.43■■□□□ 1.5
SDC2-205ENST00000520233 NRKQ7Z2Y5 1582 aa24.42■■□□□ 1.5
SDC2-205ENST00000520233 TTC21BQ7Z4L5 1316 aa24.42■■□□□ 1.5
SDC2-205ENST00000520233 SBNO1A3KN83 1393 aa24.42■■□□□ 1.5
SDC2-205ENST00000520233 TTC21AQ8NDW8 1320 aa24.41■■□□□ 1.5
SDC2-205ENST00000520233 TRPM3Q9HCF6 1732 aaPredicted RBP24.39■■□□□ 1.5
SDC2-205ENST00000520233 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.39■■□□□ 1.49
SDC2-205ENST00000520233 CGNL1Q0VF96 1302 aa24.38■■□□□ 1.49
SDC2-205ENST00000520233 PAK3O75914 559 aaPredicted RBP24.38■■□□□ 1.49
SDC2-205ENST00000520233 SPATA31A3Q5VYP0 1347 aa24.36■■□□□ 1.49
SDC2-205ENST00000520233 AMER1Q5JTC6 1135 aaPredicted RBP24.36■■□□□ 1.49
SDC2-205ENST00000520233 TNS3Q68CZ2 1445 aa24.35■■□□□ 1.49
SDC2-205ENST00000520233 NPC1L1Q9UHC9 1359 aa24.35■■□□□ 1.49
SDC2-205ENST00000520233 FYB1O15117 783 aa24.35■■□□□ 1.49
SDC2-205ENST00000520233 PHLPP1O60346 1717 aa24.35■■□□□ 1.49
SDC2-205ENST00000520233 NME9Q86XW9 330 aa24.34■■□□□ 1.49
SDC2-205ENST00000520233 LRRC59Q96AG4 307 aaKnown RBP24.34■■□□□ 1.49
SDC2-205ENST00000520233 NSD2O96028 1365 aa24.33■■□□□ 1.49
SDC2-205ENST00000520233 ABTB2Q8N961 1025 aa24.33■■□□□ 1.49
SDC2-205ENST00000520233 COL16A1Q07092 1604 aaPredicted RBP24.32■■□□□ 1.48
SDC2-205ENST00000520233 ALS2Q96Q42 1657 aa24.32■■□□□ 1.48
SDC2-205ENST00000520233 ARHGEF10O15013 1369 aa24.31■■□□□ 1.48
SDC2-205ENST00000520233 USP31Q70CQ4 1352 aa24.31■■□□□ 1.48
SDC2-205ENST00000520233 PIK3C2AO00443 1686 aa24.3■■□□□ 1.48
SDC2-205ENST00000520233 LMOD2Q6P5Q4 547 aa24.3■■□□□ 1.48
SDC2-205ENST00000520233 GGNBP2Q9H3C7 697 aa24.3■■□□□ 1.48
SDC2-205ENST00000520233 KIF20BQ96Q89 1820 aa24.3■■□□□ 1.48
SDC2-205ENST00000520233 NLRP6P59044 892 aa24.29■■□□□ 1.48
SDC2-205ENST00000520233 NLRP13Q86W25 1043 aa24.29■■□□□ 1.48
SDC2-205ENST00000520233 CC2D1BQ5T0F9 858 aaKnown RBP24.28■■□□□ 1.48
SDC2-205ENST00000520233 COG3Q96JB2 828 aa24.28■■□□□ 1.48
SDC2-205ENST00000520233 ZRANB1Q9UGI0 708 aa24.28■■□□□ 1.48
SDC2-205ENST00000520233 OVOS2A0A0J9YW53 1432 aa24.27■■□□□ 1.48
SDC2-205ENST00000520233 OVOS2Q6IE36 1432 aa24.27■■□□□ 1.48
SDC2-205ENST00000520233 HSPA1LP34931 641 aa24.26■■□□□ 1.47
SDC2-205ENST00000520233 NUTM2GQ5VZR2 741 aa24.26■■□□□ 1.47
SDC2-205ENST00000520233 USP54Q70EL1 1684 aa24.26■■□□□ 1.47
SDC2-205ENST00000520233 DIEXFQ68CQ4 756 aaKnown RBP24.25■■□□□ 1.47
SDC2-205ENST00000520233 USP19O94966 1318 aa24.24■■□□□ 1.47
SDC2-205ENST00000520233 PNPLA6Q8IY17 1366 aa24.24■■□□□ 1.47
SDC2-205ENST00000520233 ANKRD26Q9UPS8 1709 aa24.24■■□□□ 1.47
SDC2-205ENST00000520233 MORC1Q86VD1 984 aa24.23■■□□□ 1.47
SDC2-205ENST00000520233 MED1Q15648 1581 aaPredicted RBP24.23■■□□□ 1.47
SDC2-205ENST00000520233 CNGB1Q14028 1251 aaPredicted RBP24.22■■□□□ 1.47
SDC2-205ENST00000520233 MARF1Q9Y4F3 1742 aaKnown RBP24.21■■□□□ 1.47
SDC2-205ENST00000520233 JCADQ9P266 1359 aa24.2■■□□□ 1.46
SDC2-205ENST00000520233 COL22A1Q8NFW1 1626 aaPredicted RBP24.2■■□□□ 1.46
SDC2-205ENST00000520233 SLIT3O75094 1523 aa24.2■■□□□ 1.46
SDC2-205ENST00000520233 PARD3Q8TEW0 1356 aa24.19■■□□□ 1.46
SDC2-205ENST00000520233 RALBP1Q15311 655 aa24.19■■□□□ 1.46
SDC2-205ENST00000520233 KCNH5Q8NCM2 988 aa24.19■■□□□ 1.46
SDC2-205ENST00000520233 ANP32CO43423 234 aa24.18■■□□□ 1.46
SDC2-205ENST00000520233 PRKRIP1Q9H875 184 aaPredicted RBP24.18■■□□□ 1.46
SDC2-205ENST00000520233 SHPRHQ149N8 1683 aa24.17■■□□□ 1.46
SDC2-205ENST00000520233 CRYBG1Q9Y4K1 1723 aa24.16■■□□□ 1.46
SDC2-205ENST00000520233 GCP02774 474 aa24.16■■□□□ 1.46
SDC2-205ENST00000520233 CABLES1Q8TDN4 633 aa24.16■■□□□ 1.46
SDC2-205ENST00000520233 AATKQ6ZMQ8 1374 aa24.16■■□□□ 1.46
SDC2-205ENST00000520233 PLEKHG5O94827 1062 aa24.15■■□□□ 1.46
SDC2-205ENST00000520233 PHRF1Q9P1Y6 1649 aaKnown RBP24.14■■□□□ 1.46
SDC2-205ENST00000520233 TNNT2P45379 298 aaPredicted RBP24.13■■□□□ 1.45
SDC2-205ENST00000520233 NFAT5O94916 1531 aa24.12■■□□□ 1.45
SDC2-205ENST00000520233 SOX12O15370 315 aa24.12■■□□□ 1.45
SDC2-205ENST00000520233 HAP1P54257 671 aaPredicted RBP24.12■■□□□ 1.45
SDC2-205ENST00000520233 SPATA31A6Q5VVP1 1343 aa24.11■■□□□ 1.45
SDC2-205ENST00000520233 ABCA3Q99758 1704 aa24.11■■□□□ 1.45
SDC2-205ENST00000520233 FBLN1P23142 703 aa24.1■■□□□ 1.45
SDC2-205ENST00000520233 PPP2R1AP30153 589 aa24.09■■□□□ 1.45
SDC2-205ENST00000520233 MYBBP1AQ9BQG0 1328 aaKnown RBP24.09■■□□□ 1.45
SDC2-205ENST00000520233 CPDO75976 1380 aa24.08■■□□□ 1.45
SDC2-205ENST00000520233 POLKQ9UBT6 870 aa24.08■■□□□ 1.45
SDC2-205ENST00000520233 RRS1Q15050 365 aaKnown RBP24.07■■□□□ 1.44
SDC2-205ENST00000520233 ARHGEF25Q86VW2 580 aa24.07■■□□□ 1.44
SDC2-205ENST00000520233 MAP3K19Q56UN5 1328 aa24.07■■□□□ 1.44
SDC2-205ENST00000520233 ZC3H6P61129 1189 aaKnown RBP24.06■■□□□ 1.44
SDC2-205ENST00000520233 SMG6Q86US8 1419 aaKnown RBP24.05■■□□□ 1.44
SDC2-205ENST00000520233 NUTM2BA6NNL0 878 aaPredicted RBP24.05■■□□□ 1.44
SDC2-205ENST00000520233 NUTM2EB1AL46 878 aaPredicted RBP24.05■■□□□ 1.44
SDC2-205ENST00000520233 NUTM2AQ8IVF1 878 aaPredicted RBP24.05■■□□□ 1.44
SDC2-205ENST00000520233 EMILIN1Q9Y6C2 1016 aa24.05■■□□□ 1.44
SDC2-205ENST00000520233 KIF24Q5T7B8 1368 aa24.03■■□□□ 1.44
SDC2-205ENST00000520233 KIAA0232Q92628 1395 aa24.03■■□□□ 1.44
SDC2-205ENST00000520233 MTHFSP49914 203 aa24.03■■□□□ 1.44
SDC2-205ENST00000520233 AMPHP49418 695 aa24.02■■□□□ 1.44
SDC2-205ENST00000520233 MAP2P11137 1827 aaKnown RBP24.02■■□□□ 1.44
SDC2-205ENST00000520233 RTL1A6NKG5 1358 aa24.02■■□□□ 1.44
SDC2-205ENST00000520233 ZBTB7CA1YPR0 619 aa24.01■■□□□ 1.43
SDC2-205ENST00000520233 PRDM11Q9NQV5 511 aa24.01■■□□□ 1.43
SDC2-205ENST00000520233 PPM1GO15355 546 aaPredicted RBP24■■□□□ 1.43
SDC2-205ENST00000520233 IP6K1Q92551 441 aa24■■□□□ 1.43
SDC2-205ENST00000520233 LTN1O94822 1766 aa24■■□□□ 1.43
SDC2-205ENST00000520233 FLT4P35916 1363 aa24■■□□□ 1.43
SDC2-205ENST00000520233 ADAMTS2O95450 1211 aa23.99■■□□□ 1.43
SDC2-205ENST00000520233 HOXC9P31274 260 aa23.99■■□□□ 1.43
SDC2-205ENST00000520233 MIER1Q8N108 512 aa23.99■■□□□ 1.43
SDC2-205ENST00000520233 CDK12Q9NYV4 1490 aaPredicted RBP23.99■■□□□ 1.43
SDC2-205ENST00000520233 ABCC6O95255 1503 aa23.99■■□□□ 1.43
SDC2-205ENST00000520233 LRP6O75581 1613 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms