RNA–Protein interactions for RNA: ENST00000514830.5

PDLIM5-220, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-220ENST00000514830 ALS2Q96Q42 1657 aa16.5■□□□□ 0.23
PDLIM5-220ENST00000514830 PER1O15534 1290 aaPredicted RBP16.5■□□□□ 0.23
PDLIM5-220ENST00000514830 NGDNQ8NEJ9 315 aaKnown RBP16.49■□□□□ 0.23
PDLIM5-220ENST00000514830 PMFBP1Q8TBY8 1022 aa16.49■□□□□ 0.23
PDLIM5-220ENST00000514830 SBNO1A3KN83 1393 aa16.49■□□□□ 0.23
PDLIM5-220ENST00000514830 NPC1L1Q9UHC9 1359 aa16.49■□□□□ 0.23
PDLIM5-220ENST00000514830 DDX10Q13206 875 aaKnown RBP16.48■□□□□ 0.23
PDLIM5-220ENST00000514830 CARD14Q9BXL6 1004 aa16.48■□□□□ 0.23
PDLIM5-220ENST00000514830 SOS2Q07890 1332 aaPredicted RBP16.47■□□□□ 0.23
PDLIM5-220ENST00000514830 TTC21AQ8NDW8 1320 aa16.47■□□□□ 0.23
PDLIM5-220ENST00000514830 NSD3Q9BZ95 1437 aa16.47■□□□□ 0.23
PDLIM5-220ENST00000514830 FOXO3O43524 673 aa16.47■□□□□ 0.23
PDLIM5-220ENST00000514830 PHLPP1O60346 1717 aa16.47■□□□□ 0.23
PDLIM5-220ENST00000514830 PIK3C2AO00443 1686 aa16.46■□□□□ 0.23
PDLIM5-220ENST00000514830 COL16A1Q07092 1604 aaPredicted RBP16.46■□□□□ 0.23
PDLIM5-220ENST00000514830 MARF1Q9Y4F3 1742 aaKnown RBP16.46■□□□□ 0.23
PDLIM5-220ENST00000514830 NSD2O96028 1365 aa16.46■□□□□ 0.23
PDLIM5-220ENST00000514830 PSME1Q06323 249 aa16.45■□□□□ 0.22
PDLIM5-220ENST00000514830 TTC21BQ7Z4L5 1316 aa16.45■□□□□ 0.22
PDLIM5-220ENST00000514830 KRT28Q7Z3Y7 464 aa16.44■□□□□ 0.22
PDLIM5-220ENST00000514830 CGNL1Q0VF96 1302 aa16.44■□□□□ 0.22
PDLIM5-220ENST00000514830 USP31Q70CQ4 1352 aa16.43■□□□□ 0.22
PDLIM5-220ENST00000514830 KNSTRNQ9Y448 316 aa16.43■□□□□ 0.22
PDLIM5-220ENST00000514830 TNS3Q68CZ2 1445 aa16.43■□□□□ 0.22
PDLIM5-220ENST00000514830 CRYBG1Q9Y4K1 1723 aa16.42■□□□□ 0.22
PDLIM5-220ENST00000514830 COL22A1Q8NFW1 1626 aaPredicted RBP16.42■□□□□ 0.22
PDLIM5-220ENST00000514830 AMER1Q5JTC6 1135 aaPredicted RBP16.42■□□□□ 0.22
PDLIM5-220ENST00000514830 RGS17Q9UGC6 210 aaPredicted RBP16.42■□□□□ 0.22
PDLIM5-220ENST00000514830 SPATA31A3Q5VYP0 1347 aa16.41■□□□□ 0.22
PDLIM5-220ENST00000514830 ARHGEF10O15013 1369 aa16.4■□□□□ 0.22
PDLIM5-220ENST00000514830 OVOS2A0A0J9YW53 1432 aa16.4■□□□□ 0.22
PDLIM5-220ENST00000514830 OVOS2Q6IE36 1432 aa16.4■□□□□ 0.22
PDLIM5-220ENST00000514830 SHPRHQ149N8 1683 aa16.4■□□□□ 0.22
PDLIM5-220ENST00000514830 FYB1O15117 783 aa16.39■□□□□ 0.21
PDLIM5-220ENST00000514830 DDX17Q92841 729 aaKnown RBP16.38■□□□□ 0.21
PDLIM5-220ENST00000514830 LRRC59Q96AG4 307 aaKnown RBP16.38■□□□□ 0.21
PDLIM5-220ENST00000514830 ABCA3Q99758 1704 aa16.38■□□□□ 0.21
PDLIM5-220ENST00000514830 SLIT3O75094 1523 aa16.38■□□□□ 0.21
PDLIM5-220ENST00000514830 PHRF1Q9P1Y6 1649 aaKnown RBP16.37■□□□□ 0.21
PDLIM5-220ENST00000514830 XPCQ01831 940 aaPredicted RBP16.36■□□□□ 0.21
PDLIM5-220ENST00000514830 POTEAQ6S8J7 498 aa16.36■□□□□ 0.21
PDLIM5-220ENST00000514830 USP19O94966 1318 aa16.36■□□□□ 0.21
PDLIM5-220ENST00000514830 PARD3Q8TEW0 1356 aa16.36■□□□□ 0.21
PDLIM5-220ENST00000514830 JCADQ9P266 1359 aa16.36■□□□□ 0.21
PDLIM5-220ENST00000514830 MEX3CQ5U5Q3 659 aaKnown RBP16.35■□□□□ 0.21
PDLIM5-220ENST00000514830 NME9Q86XW9 330 aa16.35■□□□□ 0.21
PDLIM5-220ENST00000514830 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.35■□□□□ 0.21
PDLIM5-220ENST00000514830 ABTB2Q8N961 1025 aa16.35■□□□□ 0.21
PDLIM5-220ENST00000514830 PAK3O75914 559 aaPredicted RBP16.34■□□□□ 0.21
PDLIM5-220ENST00000514830 NLRP13Q86W25 1043 aa16.34■□□□□ 0.21
PDLIM5-220ENST00000514830 ZNF772Q68DY9 489 aaPredicted RBP16.33■□□□□ 0.2
PDLIM5-220ENST00000514830 COG3Q96JB2 828 aa16.33■□□□□ 0.2
PDLIM5-220ENST00000514830 PNPLA6Q8IY17 1366 aa16.33■□□□□ 0.2
PDLIM5-220ENST00000514830 NFAT5O94916 1531 aa16.33■□□□□ 0.2
PDLIM5-220ENST00000514830 MAP2P11137 1827 aaKnown RBP16.33■□□□□ 0.2
PDLIM5-220ENST00000514830 NLRP6P59044 892 aa16.32■□□□□ 0.2
PDLIM5-220ENST00000514830 RALBP1Q15311 655 aa16.32■□□□□ 0.2
PDLIM5-220ENST00000514830 DIEXFQ68CQ4 756 aaKnown RBP16.32■□□□□ 0.2
PDLIM5-220ENST00000514830 AATKQ6ZMQ8 1374 aa16.32■□□□□ 0.2
PDLIM5-220ENST00000514830 GGNBP2Q9H3C7 697 aa16.31■□□□□ 0.2
PDLIM5-220ENST00000514830 SPATA31A6Q5VVP1 1343 aa16.3■□□□□ 0.2
PDLIM5-220ENST00000514830 PRKRIP1Q9H875 184 aaPredicted RBP16.3■□□□□ 0.2
PDLIM5-220ENST00000514830 LTN1O94822 1766 aa16.3■□□□□ 0.2
PDLIM5-220ENST00000514830 ABCC6O95255 1503 aa16.29■□□□□ 0.2
PDLIM5-220ENST00000514830 SMG6Q86US8 1419 aaKnown RBP16.29■□□□□ 0.2
PDLIM5-220ENST00000514830 MORC1Q86VD1 984 aa16.29■□□□□ 0.2
PDLIM5-220ENST00000514830 KCNH5Q8NCM2 988 aa16.29■□□□□ 0.2
PDLIM5-220ENST00000514830 ZRANB1Q9UGI0 708 aa16.29■□□□□ 0.2
PDLIM5-220ENST00000514830 CC2D1BQ5T0F9 858 aaKnown RBP16.28■□□□□ 0.2
PDLIM5-220ENST00000514830 KIF24Q5T7B8 1368 aa16.27■□□□□ 0.2
PDLIM5-220ENST00000514830 CPDO75976 1380 aa16.26■□□□□ 0.19
PDLIM5-220ENST00000514830 ANP32CO43423 234 aa16.26■□□□□ 0.19
PDLIM5-220ENST00000514830 LMOD2Q6P5Q4 547 aa16.26■□□□□ 0.19
PDLIM5-220ENST00000514830 COL18A1P39060 1754 aa16.26■□□□□ 0.19
PDLIM5-220ENST00000514830 GCP02774 474 aa16.25■□□□□ 0.19
PDLIM5-220ENST00000514830 MYBBP1AQ9BQG0 1328 aaKnown RBP16.24■□□□□ 0.19
PDLIM5-220ENST00000514830 NUTM2GQ5VZR2 741 aa16.24■□□□□ 0.19
PDLIM5-220ENST00000514830 RTL1A6NKG5 1358 aa16.24■□□□□ 0.19
PDLIM5-220ENST00000514830 PEAK1Q9H792 1746 aa16.23■□□□□ 0.19
PDLIM5-220ENST00000514830 LMO7Q8WWI1 1683 aa16.23■□□□□ 0.19
PDLIM5-220ENST00000514830 INSRP06213 1382 aa16.23■□□□□ 0.19
PDLIM5-220ENST00000514830 COL14A1Q05707 1796 aaKnown RBP16.23■□□□□ 0.19
PDLIM5-220ENST00000514830 CDK12Q9NYV4 1490 aaPredicted RBP16.22■□□□□ 0.19
PDLIM5-220ENST00000514830 RXRBP28702 533 aa16.22■□□□□ 0.19
PDLIM5-220ENST00000514830 PPP2R1AP30153 589 aa16.22■□□□□ 0.19
PDLIM5-220ENST00000514830 ARHGEF25Q86VW2 580 aa16.22■□□□□ 0.19
PDLIM5-220ENST00000514830 POLKQ9UBT6 870 aa16.21■□□□□ 0.19
PDLIM5-220ENST00000514830 NWD2Q9ULI1 1742 aa16.2■□□□□ 0.18
PDLIM5-220ENST00000514830 CABLES1Q8TDN4 633 aa16.2■□□□□ 0.18
PDLIM5-220ENST00000514830 MAP3K19Q56UN5 1328 aa16.19■□□□□ 0.18
PDLIM5-220ENST00000514830 RGPD5Q99666 1765 aa16.19■□□□□ 0.18
PDLIM5-220ENST00000514830 FAM208AQ9UK61 1670 aaKnown RBP16.19■□□□□ 0.18
PDLIM5-220ENST00000514830 FLT4P35916 1363 aa16.19■□□□□ 0.18
PDLIM5-220ENST00000514830 BLMP54132 1417 aaPredicted RBP16.19■□□□□ 0.18
PDLIM5-220ENST00000514830 PLCH1Q4KWH8 1693 aa16.18■□□□□ 0.18
PDLIM5-220ENST00000514830 COL3A1P02461 1466 aaPredicted RBP16.17■□□□□ 0.18
PDLIM5-220ENST00000514830 KIAA0232Q92628 1395 aa16.17■□□□□ 0.18
PDLIM5-220ENST00000514830 NUTM2BA6NNL0 878 aaPredicted RBP16.17■□□□□ 0.18
PDLIM5-220ENST00000514830 NUTM2EB1AL46 878 aaPredicted RBP16.17■□□□□ 0.18
PDLIM5-220ENST00000514830 NUTM2AQ8IVF1 878 aaPredicted RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms