RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 HDGFL1Q5TGJ6 251 aa15.35■□□□□ 0.05
USP53-209ENST00000514665 DUSP27Q5VZP5 1158 aa15.35■□□□□ 0.05
USP53-209ENST00000514665 GAS2L2Q8NHY3 880 aa15.35■□□□□ 0.05
USP53-209ENST00000514665 SLC26A8Q96RN1 970 aa15.35■□□□□ 0.05
USP53-209ENST00000514665 GNAI2P04899 355 aa15.34■□□□□ 0.05
USP53-209ENST00000514665 SYTL4Q96C24 671 aaPredicted RBP15.34■□□□□ 0.05
USP53-209ENST00000514665 CT47B1P0C2W7 299 aaPredicted RBP15.34■□□□□ 0.05
USP53-209ENST00000514665 ANO8Q9HCE9 1232 aaPredicted RBP15.34■□□□□ 0.05
USP53-209ENST00000514665 MCM4P33991 863 aa15.33■□□□□ 0.05
USP53-209ENST00000514665 CCAR2Q8N163 923 aaKnown RBP15.33■□□□□ 0.05
USP53-209ENST00000514665 ADGRF5Q8IZF2 1346 aa15.33■□□□□ 0.04
USP53-209ENST00000514665 IQGAP2Q13576 1575 aa15.33■□□□□ 0.04
USP53-209ENST00000514665 MPNDQ8N594 471 aa15.33■□□□□ 0.04
USP53-209ENST00000514665 FSD1Q9BTV5 496 aa15.33■□□□□ 0.04
USP53-209ENST00000514665 MAPKBP1O60336 1514 aa15.32■□□□□ 0.04
USP53-209ENST00000514665 FIBPO43427 364 aa15.32■□□□□ 0.04
USP53-209ENST00000514665 DCTN1Q14203 1278 aa15.32■□□□□ 0.04
USP53-209ENST00000514665 BCL11BQ9C0K0 894 aaPredicted RBP15.32■□□□□ 0.04
USP53-209ENST00000514665 R3HCC1Q9Y3T6 440 aaKnown RBP15.32■□□□□ 0.04
USP53-209ENST00000514665 MAGI1Q96QZ7 1491 aaPredicted RBP15.32■□□□□ 0.04
USP53-209ENST00000514665 AKAP17AQ02040 695 aaKnown RBP15.32■□□□□ 0.04
USP53-209ENST00000514665 LRRFIP1Q32MZ4 808 aaKnown RBP15.32■□□□□ 0.04
USP53-209ENST00000514665 CNTROBQ8N137 903 aa15.32■□□□□ 0.04
USP53-209ENST00000514665 CCDC141Q6ZP82 1450 aa15.31■□□□□ 0.04
USP53-209ENST00000514665 FCHSD2O94868 740 aa15.31■□□□□ 0.04
USP53-209ENST00000514665 SYNE3Q6ZMZ3 975 aa15.31■□□□□ 0.04
USP53-209ENST00000514665 NINLQ9Y2I6 1382 aa15.31■□□□□ 0.04
USP53-209ENST00000514665 K7ELQ4 463 aaPredicted RBP15.31■□□□□ 0.04
USP53-209ENST00000514665 WAPLQ7Z5K2 1190 aa15.31■□□□□ 0.04
USP53-209ENST00000514665 TRDNQ13061 729 aa15.3■□□□□ 0.04
USP53-209ENST00000514665 SASS6Q6UVJ0 657 aa15.3■□□□□ 0.04
USP53-209ENST00000514665 CHMP4CQ96CF2 233 aa15.3■□□□□ 0.04
USP53-209ENST00000514665 MIS18AQ9NYP9 233 aa15.3■□□□□ 0.04
USP53-209ENST00000514665 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.3■□□□□ 0.04
USP53-209ENST00000514665 MAP4K4O95819 1239 aaPredicted RBP15.3■□□□□ 0.04
USP53-209ENST00000514665 IL1RAPL2Q9NP60 686 aa15.3■□□□□ 0.04
USP53-209ENST00000514665 TPD52L1Q16890 204 aaPredicted RBP15.29■□□□□ 0.04
USP53-209ENST00000514665 WASHC4Q2M389 1173 aa15.29■□□□□ 0.04
USP53-209ENST00000514665 NFE2L2Q16236 605 aa15.29■□□□□ 0.04
USP53-209ENST00000514665 RTEL1-TNFRSF6BF6WH68 1400 aa15.29■□□□□ 0.04
USP53-209ENST00000514665 MBD3O95983 291 aa15.28■□□□□ 0.04
USP53-209ENST00000514665 TPM3P06753 285 aa15.28■□□□□ 0.04
USP53-209ENST00000514665 CCDC73Q6ZRK6 1079 aa15.28■□□□□ 0.04
USP53-209ENST00000514665 EXOC6BQ9Y2D4 811 aa15.28■□□□□ 0.04
USP53-209ENST00000514665 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.28■□□□□ 0.04
USP53-209ENST00000514665 TRIM29Q14134 588 aa15.28■□□□□ 0.04
USP53-209ENST00000514665 ESCO1Q5FWF5 840 aa15.28■□□□□ 0.04
USP53-209ENST00000514665 ZNF692Q9BU19 519 aaPredicted RBP15.28■□□□□ 0.04
USP53-209ENST00000514665 DISP3Q9P2K9 1392 aa15.28■□□□□ 0.04
USP53-209ENST00000514665 LRRCC1Q9C099 1032 aa15.28■□□□□ 0.04
USP53-209ENST00000514665 IFT57Q9NWB7 429 aa15.27■□□□□ 0.04
USP53-209ENST00000514665 ATAD2Q6PL18 1390 aa15.27■□□□□ 0.03
USP53-209ENST00000514665 CCDC61Q9Y6R9 512 aa15.27■□□□□ 0.03
USP53-209ENST00000514665 MARCH6O60337 910 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 MCM2P49736 904 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 CCT4P50991 539 aaKnown RBP15.26■□□□□ 0.03
USP53-209ENST00000514665 NFXL1Q6ZNB6 911 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 MCM10Q7L590 875 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 RALYLQ86SE5 291 aaKnown RBP15.26■□□□□ 0.03
USP53-209ENST00000514665 DNAJC2Q99543 621 aaKnown RBP15.26■□□□□ 0.03
USP53-209ENST00000514665 RPGRIP1LQ68CZ1 1315 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 KDM4AO75164 1064 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 SDF4Q9BRK5 362 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 SRCIN1Q9C0H9 1055 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 SIL1Q9H173 461 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 GRPEL1Q9HAV7 217 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 HOMER1Q86YM7 354 aa15.26■□□□□ 0.03
USP53-209ENST00000514665 IGHDP01880 384 aa15.25■□□□□ 0.03
USP53-209ENST00000514665 ZNF530Q6P9A1 599 aaPredicted RBP15.25■□□□□ 0.03
USP53-209ENST00000514665 NUDT16Q96DE0 195 aaKnown RBP15.25■□□□□ 0.03
USP53-209ENST00000514665 NKTRP30414 1462 aaKnown RBP15.24■□□□□ 0.03
USP53-209ENST00000514665 SRGAP3O43295 1099 aa15.24■□□□□ 0.03
USP53-209ENST00000514665 TRIM27P14373 513 aa15.24■□□□□ 0.03
USP53-209ENST00000514665 PDE4CQ08493 712 aa15.24■□□□□ 0.03
USP53-209ENST00000514665 PLEKHO1Q53GL0 409 aaPredicted RBP15.24■□□□□ 0.03
USP53-209ENST00000514665 EMILIN1Q9Y6C2 1016 aa15.24■□□□□ 0.03
USP53-209ENST00000514665 LRPPRCP42704 1394 aaKnown RBP15.24■□□□□ 0.03
USP53-209ENST00000514665 SMARCA5O60264 1052 aaPredicted RBP15.24■□□□□ 0.03
USP53-209ENST00000514665 PSMA5P28066 241 aa15.24■□□□□ 0.03
USP53-209ENST00000514665 CEBPZQ03701 1054 aaKnown RBP15.24■□□□□ 0.03
USP53-209ENST00000514665 NME9Q86XW9 330 aa15.23■□□□□ 0.03
USP53-209ENST00000514665 NOC3LQ8WTT2 800 aaKnown RBP15.23■□□□□ 0.03
USP53-209ENST00000514665 TBC1D2Q9BYX2 928 aa15.23■□□□□ 0.03
USP53-209ENST00000514665 G3V3G9 751 aa15.23■□□□□ 0.03
USP53-209ENST00000514665 DCAF8Q5TAQ9 597 aa15.23■□□□□ 0.03
USP53-209ENST00000514665 RPAP2Q8IXW5 612 aaPredicted RBP15.23■□□□□ 0.03
USP53-209ENST00000514665 UPF3BQ9BZI7 483 aaKnown RBP15.23■□□□□ 0.03
USP53-209ENST00000514665 ATF3P18847 181 aa15.22■□□□□ 0.03
USP53-209ENST00000514665 IDI1Q13907 227 aa15.22■□□□□ 0.03
USP53-209ENST00000514665 FMNL2Q96PY5 1086 aa15.22■□□□□ 0.03
USP53-209ENST00000514665 TRIM5Q9C035 493 aa15.22■□□□□ 0.03
USP53-209ENST00000514665 CCDC39Q9UFE4 941 aa15.22■□□□□ 0.03
USP53-209ENST00000514665 STK3Q13188 491 aa15.22■□□□□ 0.03
USP53-209ENST00000514665 FBLN1P23142 703 aa15.22■□□□□ 0.03
USP53-209ENST00000514665 VPS53Q5VIR6 699 aa15.22■□□□□ 0.03
USP53-209ENST00000514665 TMX4Q9H1E5 349 aaPredicted RBP15.22■□□□□ 0.03
USP53-209ENST00000514665 GPRASP1Q5JY77 1395 aa15.21■□□□□ 0.03
USP53-209ENST00000514665 TSPY26PQ9H489 355 aa15.21■□□□□ 0.03
USP53-209ENST00000514665 CWC22Q9HCG8 908 aaKnown RBP15.21■□□□□ 0.03
USP53-209ENST00000514665 ATP2B1P20020 1258 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms