RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 RGS17Q9UGC6 210 aaPredicted RBP11.59□□□□□ -0.55
CCL28-204ENST00000514421 NHSL1Q5SYE7 1610 aa11.59□□□□□ -0.55
CCL28-204ENST00000514421 BRD4O60885 1362 aaPredicted RBP11.58□□□□□ -0.56
CCL28-204ENST00000514421 USP32Q8NFA0 1604 aa11.58□□□□□ -0.56
CCL28-204ENST00000514421 HAP1P54257 671 aaPredicted RBP11.58□□□□□ -0.56
CCL28-204ENST00000514421 ABTB2Q8N961 1025 aa11.58□□□□□ -0.56
CCL28-204ENST00000514421 CABLES1Q8TDN4 633 aa11.58□□□□□ -0.56
CCL28-204ENST00000514421 PLEKHG5O94827 1062 aa11.57□□□□□ -0.56
CCL28-204ENST00000514421 ZNF772Q68DY9 489 aaPredicted RBP11.57□□□□□ -0.56
CCL28-204ENST00000514421 HDGFL2Q7Z4V5 671 aaPredicted RBP11.57□□□□□ -0.56
CCL28-204ENST00000514421 C8orf37Q96NL8 207 aa11.57□□□□□ -0.56
CCL28-204ENST00000514421 TERF2IPQ9NYB0 399 aa11.57□□□□□ -0.56
CCL28-204ENST00000514421 TNS3Q68CZ2 1445 aa11.57□□□□□ -0.56
CCL28-204ENST00000514421 RGPD8O14715 1765 aaPredicted RBP11.56□□□□□ -0.56
CCL28-204ENST00000514421 KIF1AQ12756 1690 aa11.56□□□□□ -0.56
CCL28-204ENST00000514421 NLRP13Q86W25 1043 aa11.56□□□□□ -0.56
CCL28-204ENST00000514421 QRICH2Q9H0J4 1663 aa11.55□□□□□ -0.56
CCL28-204ENST00000514421 NLRP6P59044 892 aa11.55□□□□□ -0.56
CCL28-204ENST00000514421 NUTM2GQ5VZR2 741 aa11.55□□□□□ -0.56
CCL28-204ENST00000514421 FNBP4Q8N3X1 1017 aaPredicted RBP11.55□□□□□ -0.56
CCL28-204ENST00000514421 TTC21BQ7Z4L5 1316 aa11.55□□□□□ -0.56
CCL28-204ENST00000514421 MED1Q15648 1581 aaPredicted RBP11.54□□□□□ -0.56
CCL28-204ENST00000514421 POTEAQ6S8J7 498 aa11.54□□□□□ -0.56
CCL28-204ENST00000514421 AFF2P51816 1311 aa11.54□□□□□ -0.56
CCL28-204ENST00000514421 KTN1Q86UP2 1357 aaKnown RBP11.54□□□□□ -0.56
CCL28-204ENST00000514421 LRP6O75581 1613 aa11.53□□□□□ -0.56
CCL28-204ENST00000514421 FAM83GA6ND36 823 aa11.53□□□□□ -0.56
CCL28-204ENST00000514421 QTRT2Q9H974 415 aaKnown RBP11.53□□□□□ -0.56
CCL28-204ENST00000514421 TTC21AQ8NDW8 1320 aa11.53□□□□□ -0.56
CCL28-204ENST00000514421 NINLQ9Y2I6 1382 aa11.53□□□□□ -0.56
CCL28-204ENST00000514421 SHPRHQ149N8 1683 aa11.52□□□□□ -0.56
CCL28-204ENST00000514421 USP6P35125 1406 aa11.52□□□□□ -0.56
CCL28-204ENST00000514421 CPSF1Q10570 1443 aaKnown RBP11.52□□□□□ -0.56
CCL28-204ENST00000514421 ILDR2Q71H61 639 aa11.52□□□□□ -0.57
CCL28-204ENST00000514421 USP21Q9UK80 565 aa11.52□□□□□ -0.57
CCL28-204ENST00000514421 SSH2Q76I76 1423 aa11.52□□□□□ -0.57
CCL28-204ENST00000514421 GCP02774 474 aa11.51□□□□□ -0.57
CCL28-204ENST00000514421 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.51□□□□□ -0.57
CCL28-204ENST00000514421 POLR3GLQ9BT43 218 aa11.51□□□□□ -0.57
CCL28-204ENST00000514421 RXRBP28702 533 aa11.5□□□□□ -0.57
CCL28-204ENST00000514421 UNC5CLQ8IV45 518 aa11.5□□□□□ -0.57
CCL28-204ENST00000514421 C11orf95C9JLR9 678 aaPredicted RBP11.49□□□□□ -0.57
CCL28-204ENST00000514421 ZC3H6P61129 1189 aaKnown RBP11.49□□□□□ -0.57
CCL28-204ENST00000514421 KCNH5Q8NCM2 988 aa11.49□□□□□ -0.57
CCL28-204ENST00000514421 PRDM11Q9NQV5 511 aa11.49□□□□□ -0.57
CCL28-204ENST00000514421 RNF216Q9NWF9 866 aaPredicted RBP11.49□□□□□ -0.57
CCL28-204ENST00000514421 TRPC5Q9UL62 973 aaPredicted RBP11.49□□□□□ -0.57
CCL28-204ENST00000514421 ITSN1Q15811 1721 aa11.49□□□□□ -0.57
CCL28-204ENST00000514421 RBM6P78332 1123 aaKnown RBP11.48□□□□□ -0.57
CCL28-204ENST00000514421 NME9Q86XW9 330 aa11.48□□□□□ -0.57
CCL28-204ENST00000514421 USP19O94966 1318 aa11.48□□□□□ -0.57
CCL28-204ENST00000514421 A0A1W2PP64 1363 aa11.48□□□□□ -0.57
CCL28-204ENST00000514421 COL22A1Q8NFW1 1626 aaPredicted RBP11.48□□□□□ -0.57
CCL28-204ENST00000514421 CD163L1Q9NR16 1453 aa11.47□□□□□ -0.57
CCL28-204ENST00000514421 ANKRD36BQ8N2N9 1353 aa11.47□□□□□ -0.57
CCL28-204ENST00000514421 BTG4Q9NY30 223 aa11.47□□□□□ -0.57
CCL28-204ENST00000514421 ZRANB1Q9UGI0 708 aa11.47□□□□□ -0.57
CCL28-204ENST00000514421 TOPAZ1Q8N9V7 1692 aa11.46□□□□□ -0.57
CCL28-204ENST00000514421 USP31Q70CQ4 1352 aa11.46□□□□□ -0.57
CCL28-204ENST00000514421 CHRNA2Q15822 529 aa11.46□□□□□ -0.57
CCL28-204ENST00000514421 CARD14Q9BXL6 1004 aa11.46□□□□□ -0.57
CCL28-204ENST00000514421 TRPM3Q9HCF6 1732 aaPredicted RBP11.46□□□□□ -0.58
CCL28-204ENST00000514421 BCL9LQ86UU0 1499 aa11.45□□□□□ -0.58
CCL28-204ENST00000514421 EDC4Q6P2E9 1401 aaKnown RBP11.45□□□□□ -0.58
CCL28-204ENST00000514421 KIAA0232Q92628 1395 aa11.45□□□□□ -0.58
CCL28-204ENST00000514421 FYB1O15117 783 aa11.45□□□□□ -0.58
CCL28-204ENST00000514421 EVA1CP58658 441 aa11.45□□□□□ -0.58
CCL28-204ENST00000514421 VPS72Q15906 364 aa11.45□□□□□ -0.58
CCL28-204ENST00000514421 COG3Q96JB2 828 aa11.45□□□□□ -0.58
CCL28-204ENST00000514421 GJD4Q96KN9 370 aaPredicted RBP11.45□□□□□ -0.58
CCL28-204ENST00000514421 PANK3Q9H999 370 aa11.45□□□□□ -0.58
CCL28-204ENST00000514421 CPDO75976 1380 aa11.44□□□□□ -0.58
CCL28-204ENST00000514421 SOX12O15370 315 aa11.44□□□□□ -0.58
CCL28-204ENST00000514421 PPP4R3CPQ6ZMV5 832 aa11.44□□□□□ -0.58
CCL28-204ENST00000514421 ARHGEF25Q86VW2 580 aa11.44□□□□□ -0.58
CCL28-204ENST00000514421 CNKSR2Q8WXI2 1034 aa11.44□□□□□ -0.58
CCL28-204ENST00000514421 SLIT2O94813 1529 aa11.44□□□□□ -0.58
CCL28-204ENST00000514421 ALS2Q96Q42 1657 aa11.43□□□□□ -0.58
CCL28-204ENST00000514421 ZBTB7CA1YPR0 619 aa11.43□□□□□ -0.58
CCL28-204ENST00000514421 CCDC9Q9Y3X0 531 aaKnown RBP11.43□□□□□ -0.58
CCL28-204ENST00000514421 KIF7Q2M1P5 1343 aa11.42□□□□□ -0.58
CCL28-204ENST00000514421 GGNBP2Q9H3C7 697 aa11.42□□□□□ -0.58
CCL28-204ENST00000514421 ATRNO75882 1429 aa11.42□□□□□ -0.58
CCL28-204ENST00000514421 AATKQ6ZMQ8 1374 aa11.41□□□□□ -0.58
CCL28-204ENST00000514421 ONECUT3O60422 494 aaPredicted RBP11.41□□□□□ -0.58
CCL28-204ENST00000514421 POTEHQ6S545 545 aa11.41□□□□□ -0.58
CCL28-204ENST00000514421 STRN4Q9NRL3 753 aa11.41□□□□□ -0.58
CCL28-204ENST00000514421 CGNL1Q0VF96 1302 aa11.4□□□□□ -0.58
CCL28-204ENST00000514421 SOCS7O14512 581 aa11.4□□□□□ -0.58
CCL28-204ENST00000514421 MIER1Q8N108 512 aa11.4□□□□□ -0.58
CCL28-204ENST00000514421 AXIN2Q9Y2T1 843 aa11.4□□□□□ -0.58
CCL28-204ENST00000514421 KNSTRNQ9Y448 316 aa11.4□□□□□ -0.58
CCL28-204ENST00000514421 SPATA31A5Q5VU36 1347 aa11.38□□□□□ -0.59
CCL28-204ENST00000514421 WASHC2AQ641Q2 1341 aa11.38□□□□□ -0.59
CCL28-204ENST00000514421 SPATA31A7Q8IWB4 1347 aa11.38□□□□□ -0.59
CCL28-204ENST00000514421 FBLN1P23142 703 aa11.38□□□□□ -0.59
CCL28-204ENST00000514421 LARP1Q6PKG0 1096 aaKnown RBP11.38□□□□□ -0.59
CCL28-204ENST00000514421 IP6K1Q92551 441 aa11.38□□□□□ -0.59
CCL28-204ENST00000514421 AKAP12Q02952 1782 aa11.38□□□□□ -0.59
CCL28-204ENST00000514421 NSD3Q9BZ95 1437 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms