RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 CGNL1Q0VF96 1302 aa17.73■□□□□ 0.43
LIMCH1-220ENST00000514190 SPATA31A6Q5VVP1 1343 aa17.73■□□□□ 0.43
LIMCH1-220ENST00000514190 RALBP1Q15311 655 aa17.72■□□□□ 0.43
LIMCH1-220ENST00000514190 CC2D1BQ5T0F9 858 aaKnown RBP17.72■□□□□ 0.43
LIMCH1-220ENST00000514190 EDC4Q6P2E9 1401 aaKnown RBP17.72■□□□□ 0.43
LIMCH1-220ENST00000514190 SOCS7O14512 581 aa17.71■□□□□ 0.43
LIMCH1-220ENST00000514190 CNGB1Q14028 1251 aaPredicted RBP17.71■□□□□ 0.43
LIMCH1-220ENST00000514190 DDX17Q92841 729 aaKnown RBP17.71■□□□□ 0.43
LIMCH1-220ENST00000514190 ITSN1Q15811 1721 aa17.71■□□□□ 0.43
LIMCH1-220ENST00000514190 RGPD8O14715 1765 aaPredicted RBP17.71■□□□□ 0.43
LIMCH1-220ENST00000514190 LRP6O75581 1613 aa17.7■□□□□ 0.42
LIMCH1-220ENST00000514190 FYB1O15117 783 aa17.7■□□□□ 0.42
LIMCH1-220ENST00000514190 LRRC59Q96AG4 307 aaKnown RBP17.7■□□□□ 0.42
LIMCH1-220ENST00000514190 RGS17Q9UGC6 210 aaPredicted RBP17.7■□□□□ 0.42
LIMCH1-220ENST00000514190 USP6P35125 1406 aa17.7■□□□□ 0.42
LIMCH1-220ENST00000514190 TTC21BQ7Z4L5 1316 aa17.7■□□□□ 0.42
LIMCH1-220ENST00000514190 FOXO3O43524 673 aa17.69■□□□□ 0.42
LIMCH1-220ENST00000514190 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.69■□□□□ 0.42
LIMCH1-220ENST00000514190 SSH2Q76I76 1423 aa17.69■□□□□ 0.42
LIMCH1-220ENST00000514190 BRD4O60885 1362 aaPredicted RBP17.68■□□□□ 0.42
LIMCH1-220ENST00000514190 NSD2O96028 1365 aa17.68■□□□□ 0.42
LIMCH1-220ENST00000514190 PARD3Q8TEW0 1356 aa17.68■□□□□ 0.42
LIMCH1-220ENST00000514190 PSME1Q06323 249 aa17.68■□□□□ 0.42
LIMCH1-220ENST00000514190 SOS2Q07890 1332 aaPredicted RBP17.67■□□□□ 0.42
LIMCH1-220ENST00000514190 PNPLA6Q8IY17 1366 aa17.66■□□□□ 0.42
LIMCH1-220ENST00000514190 MORC1Q86VD1 984 aa17.66■□□□□ 0.42
LIMCH1-220ENST00000514190 TTC21AQ8NDW8 1320 aa17.66■□□□□ 0.42
LIMCH1-220ENST00000514190 AKAP12Q02952 1782 aa17.66■□□□□ 0.42
LIMCH1-220ENST00000514190 CCER2I3L3R5 266 aa17.65■□□□□ 0.42
LIMCH1-220ENST00000514190 KRT28Q7Z3Y7 464 aa17.65■□□□□ 0.42
LIMCH1-220ENST00000514190 NME9Q86XW9 330 aa17.65■□□□□ 0.42
LIMCH1-220ENST00000514190 GGNBP2Q9H3C7 697 aa17.65■□□□□ 0.42
LIMCH1-220ENST00000514190 NPHP3Q7Z494 1330 aa17.65■□□□□ 0.42
LIMCH1-220ENST00000514190 KIF1AQ12756 1690 aa17.64■□□□□ 0.42
LIMCH1-220ENST00000514190 MON2Q7Z3U7 1717 aa17.64■□□□□ 0.41
LIMCH1-220ENST00000514190 MEX3CQ5U5Q3 659 aaKnown RBP17.64■□□□□ 0.41
LIMCH1-220ENST00000514190 PXDNQ92626 1479 aa17.63■□□□□ 0.41
LIMCH1-220ENST00000514190 NUTM2BA6NNL0 878 aaPredicted RBP17.63■□□□□ 0.41
LIMCH1-220ENST00000514190 NUTM2EB1AL46 878 aaPredicted RBP17.63■□□□□ 0.41
LIMCH1-220ENST00000514190 NUTM2AQ8IVF1 878 aaPredicted RBP17.63■□□□□ 0.41
LIMCH1-220ENST00000514190 POTEAQ6S8J7 498 aa17.62■□□□□ 0.41
LIMCH1-220ENST00000514190 MYBBP1AQ9BQG0 1328 aaKnown RBP17.62■□□□□ 0.41
LIMCH1-220ENST00000514190 PAK3O75914 559 aaPredicted RBP17.61■□□□□ 0.41
LIMCH1-220ENST00000514190 PPP2R1AP30153 589 aa17.61■□□□□ 0.41
LIMCH1-220ENST00000514190 XPCQ01831 940 aaPredicted RBP17.61■□□□□ 0.41
LIMCH1-220ENST00000514190 ZRANB1Q9UGI0 708 aa17.61■□□□□ 0.41
LIMCH1-220ENST00000514190 COG3Q96JB2 828 aa17.6■□□□□ 0.41
LIMCH1-220ENST00000514190 USP31Q70CQ4 1352 aa17.6■□□□□ 0.41
LIMCH1-220ENST00000514190 COL22A1Q8NFW1 1626 aaPredicted RBP17.6■□□□□ 0.41
LIMCH1-220ENST00000514190 NRKQ7Z2Y5 1582 aa17.59■□□□□ 0.41
LIMCH1-220ENST00000514190 NLRP13Q86W25 1043 aa17.59■□□□□ 0.41
LIMCH1-220ENST00000514190 ABTB2Q8N961 1025 aa17.59■□□□□ 0.41
LIMCH1-220ENST00000514190 SBNO1A3KN83 1393 aa17.58■□□□□ 0.4
LIMCH1-220ENST00000514190 TNNT2P45379 298 aaPredicted RBP17.57■□□□□ 0.4
LIMCH1-220ENST00000514190 NLRP6P59044 892 aa17.57■□□□□ 0.4
LIMCH1-220ENST00000514190 ZNF772Q68DY9 489 aaPredicted RBP17.57■□□□□ 0.4
LIMCH1-220ENST00000514190 CCDC184Q52MB2 194 aa17.56■□□□□ 0.4
LIMCH1-220ENST00000514190 OVOS2A0A0J9YW53 1432 aa17.55■□□□□ 0.4
LIMCH1-220ENST00000514190 OVOS2Q6IE36 1432 aa17.55■□□□□ 0.4
LIMCH1-220ENST00000514190 NUTM2GQ5VZR2 741 aa17.54■□□□□ 0.4
LIMCH1-220ENST00000514190 MRS2Q9HD23 443 aa17.54■□□□□ 0.4
LIMCH1-220ENST00000514190 AFF2P51816 1311 aa17.53■□□□□ 0.4
LIMCH1-220ENST00000514190 SPATA31A3Q5VYP0 1347 aa17.53■□□□□ 0.4
LIMCH1-220ENST00000514190 C8orf37Q96NL8 207 aa17.53■□□□□ 0.4
LIMCH1-220ENST00000514190 KIF20BQ96Q89 1820 aa17.53■□□□□ 0.4
LIMCH1-220ENST00000514190 AATKQ6ZMQ8 1374 aa17.53■□□□□ 0.4
LIMCH1-220ENST00000514190 ADAMTS2O95450 1211 aa17.52■□□□□ 0.4
LIMCH1-220ENST00000514190 MTHFSP49914 203 aa17.52■□□□□ 0.4
LIMCH1-220ENST00000514190 LMOD2Q6P5Q4 547 aa17.52■□□□□ 0.4
LIMCH1-220ENST00000514190 FBLN1P23142 703 aa17.51■□□□□ 0.39
LIMCH1-220ENST00000514190 TRPM3Q9HCF6 1732 aaPredicted RBP17.51■□□□□ 0.39
LIMCH1-220ENST00000514190 POLKQ9UBT6 870 aa17.51■□□□□ 0.39
LIMCH1-220ENST00000514190 ANKRD26Q9UPS8 1709 aa17.51■□□□□ 0.39
LIMCH1-220ENST00000514190 PIK3C2AO00443 1686 aa17.51■□□□□ 0.39
LIMCH1-220ENST00000514190 TNS3Q68CZ2 1445 aa17.5■□□□□ 0.39
LIMCH1-220ENST00000514190 NGLY1Q96IV0 654 aa17.49■□□□□ 0.39
LIMCH1-220ENST00000514190 ARHGEF10O15013 1369 aa17.49■□□□□ 0.39
LIMCH1-220ENST00000514190 MARF1Q9Y4F3 1742 aaKnown RBP17.49■□□□□ 0.39
LIMCH1-220ENST00000514190 USP19O94966 1318 aa17.48■□□□□ 0.39
LIMCH1-220ENST00000514190 KCNH5Q8NCM2 988 aa17.48■□□□□ 0.39
LIMCH1-220ENST00000514190 PNISRQ8TF01 805 aaKnown RBP17.47■□□□□ 0.39
LIMCH1-220ENST00000514190 USP54Q70EL1 1684 aa17.46■□□□□ 0.39
LIMCH1-220ENST00000514190 GCP02774 474 aa17.46■□□□□ 0.39
LIMCH1-220ENST00000514190 RRS1Q15050 365 aaKnown RBP17.46■□□□□ 0.39
LIMCH1-220ENST00000514190 CFAP53Q96M91 514 aa17.46■□□□□ 0.39
LIMCH1-220ENST00000514190 ALS2Q96Q42 1657 aa17.45■□□□□ 0.38
LIMCH1-220ENST00000514190 INSRP06213 1382 aa17.45■□□□□ 0.38
LIMCH1-220ENST00000514190 SOX12O15370 315 aa17.45■□□□□ 0.38
LIMCH1-220ENST00000514190 RXRBP28702 533 aa17.45■□□□□ 0.38
LIMCH1-220ENST00000514190 EMILIN1Q9Y6C2 1016 aa17.45■□□□□ 0.38
LIMCH1-220ENST00000514190 PPM1GO15355 546 aaPredicted RBP17.44■□□□□ 0.38
LIMCH1-220ENST00000514190 FNBP4Q8N3X1 1017 aaPredicted RBP17.44■□□□□ 0.38
LIMCH1-220ENST00000514190 MAP3K19Q56UN5 1328 aa17.44■□□□□ 0.38
LIMCH1-220ENST00000514190 CDK12Q9NYV4 1490 aaPredicted RBP17.44■□□□□ 0.38
LIMCH1-220ENST00000514190 QTRT2Q9H974 415 aaKnown RBP17.43■□□□□ 0.38
LIMCH1-220ENST00000514190 SMG6Q86US8 1419 aaKnown RBP17.43■□□□□ 0.38
LIMCH1-220ENST00000514190 ABCA3Q99758 1704 aa17.43■□□□□ 0.38
LIMCH1-220ENST00000514190 SLIT3O75094 1523 aa17.42■□□□□ 0.38
LIMCH1-220ENST00000514190 PLEKHG5O94827 1062 aa17.42■□□□□ 0.38
LIMCH1-220ENST00000514190 CABLES1Q8TDN4 633 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms