RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 SURF6O75683 361 aaKnown RBP12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 XPCQ01831 940 aaPredicted RBP12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 DCAF8Q5TAQ9 597 aa12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 TMX4Q9H1E5 349 aaPredicted RBP12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 SERPINC1P01008 464 aa12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 UBE2Q2Q8WVN8 375 aa12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 WDR33Q9C0J8 1336 aaKnown RBP12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 WASHC4Q2M389 1173 aa12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 NOB1Q9ULX3 412 aaKnown RBP12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 NINLQ9Y2I6 1382 aa12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 FILIP1Q7Z7B0 1213 aa12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 DHX37Q8IY37 1157 aaKnown RBP12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 TSR2Q969E8 191 aaKnown RBP12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 VGFO15240 615 aaPredicted RBP12.36□□□□□ -0.43
PDLIM3-209ENST00000514142 PDCL3Q9H2J4 239 aa12.36□□□□□ -0.43
PDLIM3-209ENST00000514142 DDX58O95786 925 aaKnown RBP12.36□□□□□ -0.43
PDLIM3-209ENST00000514142 JPH4Q96JJ6 628 aa12.36□□□□□ -0.43
PDLIM3-209ENST00000514142 KIAA0754O94854 1291 aa12.36□□□□□ -0.43
PDLIM3-209ENST00000514142 STK38Q15208 465 aa12.36□□□□□ -0.43
PDLIM3-209ENST00000514142 ZHX1Q9UKY1 873 aaPredicted RBP12.36□□□□□ -0.43
PDLIM3-209ENST00000514142 EID1Q9Y6B2 187 aa12.35□□□□□ -0.43
PDLIM3-209ENST00000514142 FILIP1LQ4L180 1135 aa12.35□□□□□ -0.43
PDLIM3-209ENST00000514142 TTC5Q8N0Z6 440 aa12.35□□□□□ -0.43
PDLIM3-209ENST00000514142 CLASRPQ8N2M8 674 aaKnown RBP12.35□□□□□ -0.43
PDLIM3-209ENST00000514142 SMARCE1Q969G3 411 aa12.35□□□□□ -0.43
PDLIM3-209ENST00000514142 CT47A1Q5JQC4 288 aaPredicted RBP12.35□□□□□ -0.43
PDLIM3-209ENST00000514142 STK3Q13188 491 aa12.34□□□□□ -0.43
PDLIM3-209ENST00000514142 TAF3Q5VWG9 929 aa12.34□□□□□ -0.43
PDLIM3-209ENST00000514142 KRT85P78386 507 aa12.34□□□□□ -0.43
PDLIM3-209ENST00000514142 TRERF1Q96PN7 1200 aa12.34□□□□□ -0.43
PDLIM3-209ENST00000514142 ERLIN1O75477 346 aa12.33□□□□□ -0.43
PDLIM3-209ENST00000514142 ZNF396Q96N95 335 aaPredicted RBP12.33□□□□□ -0.43
PDLIM3-209ENST00000514142 DEF6Q9H4E7 631 aa12.33□□□□□ -0.43
PDLIM3-209ENST00000514142 CGNQ9P2M7 1197 aaKnown RBP12.33□□□□□ -0.43
PDLIM3-209ENST00000514142 EIF3JO75822 258 aaKnown RBP12.33□□□□□ -0.44
PDLIM3-209ENST00000514142 AIMP1Q12904 312 aaKnown RBP12.33□□□□□ -0.44
PDLIM3-209ENST00000514142 CADPSQ9ULU8 1353 aa12.33□□□□□ -0.44
PDLIM3-209ENST00000514142 ME1P48163 572 aa12.33□□□□□ -0.44
PDLIM3-209ENST00000514142 GNAI3P08754 354 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 FAM193AP78312 1265 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 LARP1BQ659C4 914 aaKnown RBP12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 CHD1LQ86WJ1 897 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 HSP90AB2PQ58FF8 381 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 AEBP1Q8IUX7 1158 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 CCDC102AQ96A19 550 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 EPS15P42566 896 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 UBXN4Q92575 508 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 CYP46A1Q9Y6A2 500 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 MVPQ14764 893 aaKnown RBP12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 AMOTL1Q8IY63 956 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 MIA2Q96PC5 1412 aa12.32□□□□□ -0.44
PDLIM3-209ENST00000514142 NUP62CLQ9H1M0 184 aa12.31□□□□□ -0.44
PDLIM3-209ENST00000514142 TWISTNBQ3B726 338 aaPredicted RBP12.31□□□□□ -0.44
PDLIM3-209ENST00000514142 ZNF644Q9H582 1327 aaPredicted RBP12.31□□□□□ -0.44
PDLIM3-209ENST00000514142 FGD6Q6ZV73 1430 aa12.31□□□□□ -0.44
PDLIM3-209ENST00000514142 PPFIBP1Q86W92 1011 aa12.31□□□□□ -0.44
PDLIM3-209ENST00000514142 DNAJC2Q99543 621 aaKnown RBP12.31□□□□□ -0.44
PDLIM3-209ENST00000514142 RIC3Q7Z5B4 369 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 ZFYVE27Q5T4F4 411 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 STK11IPQ8N1F8 1099 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 SPATA32Q96LK8 384 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 CENPHQ9H3R5 247 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 BRMS1Q9HCU9 246 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 TCEAL9Q9UHQ7 104 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 MAP4K4O95819 1239 aaPredicted RBP12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 USP8P40818 1118 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 ATF7IPQ6VMQ6 1270 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 CABP2Q9NPB3 220 aa12.3□□□□□ -0.44
PDLIM3-209ENST00000514142 TMCO3Q6UWJ1 677 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 NOL10Q9BSC4 688 aaKnown RBP12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 GOLGA6L10A6NI86 522 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 XBP1P17861 261 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 PRKAR2BP31323 418 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 VPS37DQ86XT2 251 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 DHX8Q14562 1220 aaKnown RBP12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 NBPF8Q3BBV2 869 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 ODF2Q5BJF6 829 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 CYB5RLQ6IPT4 315 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 MYO6Q9UM54 1294 aa12.29□□□□□ -0.44
PDLIM3-209ENST00000514142 CAMK4Q16566 473 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 TRIM34Q9BYJ4 488 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 MAGEC2Q9UBF1 373 aaPredicted RBP12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 GNAI2P04899 355 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 CEP57L1Q8IYX8 460 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 MTMR7Q9Y216 660 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 FYB1O15117 783 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 C20orf194Q5TEA3 1177 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 TBC1D2Q9BYX2 928 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 ZNHIT6Q9NWK9 470 aaKnown RBP12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 PTPN14Q15678 1187 aa12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 UPF3BQ9BZI7 483 aaKnown RBP12.28□□□□□ -0.44
PDLIM3-209ENST00000514142 CCDC181Q5TID7 509 aa12.27□□□□□ -0.44
PDLIM3-209ENST00000514142 SSFA2P28290 1259 aa12.27□□□□□ -0.45
PDLIM3-209ENST00000514142 NBPF1Q3BBV0 1214 aa12.27□□□□□ -0.45
PDLIM3-209ENST00000514142 PPP4R3BQ5MIZ7 849 aa12.27□□□□□ -0.45
PDLIM3-209ENST00000514142 SPDYE4A6NLX3 237 aa12.27□□□□□ -0.45
PDLIM3-209ENST00000514142 MAP3K11Q16584 847 aa12.27□□□□□ -0.45
PDLIM3-209ENST00000514142 JMYQ8N9B5 988 aa12.27□□□□□ -0.45
PDLIM3-209ENST00000514142 TNPO1Q92973 898 aaKnown RBP12.27□□□□□ -0.45
PDLIM3-209ENST00000514142 LRRCC1Q9C099 1032 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms