RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 LMOD2Q6P5Q4 547 aa27.58■■■□□ 2.01
USP53-203ENST00000507597 SPATA31A3Q5VYP0 1347 aa27.58■■■□□ 2.01
USP53-203ENST00000507597 KNSTRNQ9Y448 316 aa27.56■■■□□ 2
USP53-203ENST00000507597 TTC21BQ7Z4L5 1316 aa27.56■■■□□ 2
USP53-203ENST00000507597 CD163L1Q9NR16 1453 aa27.56■■■□□ 2
USP53-203ENST00000507597 ABTB2Q8N961 1025 aa27.55■■■□□ 2
USP53-203ENST00000507597 TNS3Q68CZ2 1445 aa27.55■■■□□ 2
USP53-203ENST00000507597 AKAP12Q02952 1782 aa27.54■■■□□ 2
USP53-203ENST00000507597 JCADQ9P266 1359 aa27.54■■■□□ 2
USP53-203ENST00000507597 NLRP13Q86W25 1043 aa27.53■■■□□ 2
USP53-203ENST00000507597 CGNL1Q0VF96 1302 aa27.52■■■□□ 2
USP53-203ENST00000507597 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.52■■■□□ 21e-6■■■□□ 17.5
USP53-203ENST00000507597 MYOM1P52179 1685 aa27.52■■■□□ 2
USP53-203ENST00000507597 COL16A1Q07092 1604 aaPredicted RBP27.51■■□□□ 1.99
USP53-203ENST00000507597 SSH2Q76I76 1423 aa27.5■■□□□ 1.99
USP53-203ENST00000507597 MON2Q7Z3U7 1717 aa27.49■■□□□ 1.99
USP53-203ENST00000507597 NSD3Q9BZ95 1437 aa27.49■■□□□ 1.99
USP53-203ENST00000507597 HAP1P54257 671 aaPredicted RBP27.48■■□□□ 1.99
USP53-203ENST00000507597 NLRP6P59044 892 aa27.48■■□□□ 1.99
USP53-203ENST00000507597 CARD14Q9BXL6 1004 aa27.47■■□□□ 1.99
USP53-203ENST00000507597 SPATA31A6Q5VVP1 1343 aa27.46■■□□□ 1.99
USP53-203ENST00000507597 TRPM3Q9HCF6 1732 aaPredicted RBP27.45■■□□□ 1.99
USP53-203ENST00000507597 DDX10Q13206 875 aaKnown RBP27.45■■□□□ 1.98
USP53-203ENST00000507597 COG3Q96JB2 828 aa27.45■■□□□ 1.98
USP53-203ENST00000507597 PNPLA6Q8IY17 1366 aa27.44■■□□□ 1.98
USP53-203ENST00000507597 NSD2O96028 1365 aa27.43■■□□□ 1.98
USP53-203ENST00000507597 KCNH5Q8NCM2 988 aa27.42■■□□□ 1.98
USP53-203ENST00000507597 USP31Q70CQ4 1352 aa27.42■■□□□ 1.98
USP53-203ENST00000507597 FYB1O15117 783 aa27.41■■□□□ 1.98
USP53-203ENST00000507597 NME9Q86XW9 330 aa27.41■■□□□ 1.98
USP53-203ENST00000507597 NRKQ7Z2Y5 1582 aa27.4■■□□□ 1.98
USP53-203ENST00000507597 NUTM2GQ5VZR2 741 aa27.4■■□□□ 1.98
USP53-203ENST00000507597 ALS2Q96Q42 1657 aa27.4■■□□□ 1.98
USP53-203ENST00000507597 PER1O15534 1290 aaPredicted RBP27.39■■□□□ 1.98
USP53-203ENST00000507597 SHPRHQ149N8 1683 aa27.38■■□□□ 1.97
USP53-203ENST00000507597 GGNBP2Q9H3C7 697 aa27.36■■□□□ 1.97
USP53-203ENST00000507597 NPC1L1Q9UHC9 1359 aa27.35■■□□□ 1.97
USP53-203ENST00000507597 USP19O94966 1318 aa27.35■■□□□ 1.97
USP53-203ENST00000507597 COL22A1Q8NFW1 1626 aaPredicted RBP27.34■■□□□ 1.97
USP53-203ENST00000507597 GCP02774 474 aa27.34■■□□□ 1.97
USP53-203ENST00000507597 ILDR2Q71H61 639 aa27.34■■□□□ 1.97
USP53-203ENST00000507597 NUTM2BA6NNL0 878 aaPredicted RBP27.33■■□□□ 1.97
USP53-203ENST00000507597 NUTM2EB1AL46 878 aaPredicted RBP27.33■■□□□ 1.97
USP53-203ENST00000507597 PLEKHG5O94827 1062 aa27.33■■□□□ 1.97
USP53-203ENST00000507597 MORC1Q86VD1 984 aa27.33■■□□□ 1.97
USP53-203ENST00000507597 NUTM2AQ8IVF1 878 aaPredicted RBP27.33■■□□□ 1.97
USP53-203ENST00000507597 MED1Q15648 1581 aaPredicted RBP27.33■■□□□ 1.97
USP53-203ENST00000507597 AMER1Q5JTC6 1135 aaPredicted RBP27.32■■□□□ 1.96
USP53-203ENST00000507597 PIK3C2AO00443 1686 aa27.32■■□□□ 1.96
USP53-203ENST00000507597 MEX3CQ5U5Q3 659 aaKnown RBP27.31■■□□□ 1.96
USP53-203ENST00000507597 CABLES1Q8TDN4 633 aa27.31■■□□□ 1.96
USP53-203ENST00000507597 OVOS2A0A0J9YW53 1432 aa27.3■■□□□ 1.96
USP53-203ENST00000507597 OVOS2Q6IE36 1432 aa27.3■■□□□ 1.96
USP53-203ENST00000507597 ZRANB1Q9UGI0 708 aa27.29■■□□□ 1.96
USP53-203ENST00000507597 KIF20BQ96Q89 1820 aa27.28■■□□□ 1.96
USP53-203ENST00000507597 CC2D1BQ5T0F9 858 aaKnown RBP27.27■■□□□ 1.96
USP53-203ENST00000507597 USP54Q70EL1 1684 aa27.25■■□□□ 1.95
USP53-203ENST00000507597 ADAMTS2O95450 1211 aa27.25■■□□□ 1.95
USP53-203ENST00000507597 SLIT3O75094 1523 aa27.25■■□□□ 1.95
USP53-203ENST00000507597 SOCS7O14512 581 aa27.24■■□□□ 1.95
USP53-203ENST00000507597 SOX12O15370 315 aa27.24■■□□□ 1.95
USP53-203ENST00000507597 PRDM11Q9NQV5 511 aa27.24■■□□□ 1.95
USP53-203ENST00000507597 ZC3H6P61129 1189 aaKnown RBP27.23■■□□□ 1.95
USP53-203ENST00000507597 CPDO75976 1380 aa27.22■■□□□ 1.95
USP53-203ENST00000507597 AATKQ6ZMQ8 1374 aa27.21■■□□□ 1.95
USP53-203ENST00000507597 CNGB1Q14028 1251 aaPredicted RBP27.2■■□□□ 1.94
USP53-203ENST00000507597 RALBP1Q15311 655 aa27.2■■□□□ 1.94
USP53-203ENST00000507597 ARHGEF25Q86VW2 580 aa27.2■■□□□ 1.94
USP53-203ENST00000507597 PHRF1Q9P1Y6 1649 aaKnown RBP27.19■■□□□ 1.94
USP53-203ENST00000507597 ZBTB7CA1YPR0 619 aa27.19■■□□□ 1.94
USP53-203ENST00000507597 NGLY1Q96IV0 654 aa27.19■■□□□ 1.94
USP53-203ENST00000507597 ANKRD26Q9UPS8 1709 aa27.19■■□□□ 1.94
USP53-203ENST00000507597 AMPHP49418 695 aa27.18■■□□□ 1.94
USP53-203ENST00000507597 KIAA0232Q92628 1395 aa27.18■■□□□ 1.94
USP53-203ENST00000507597 TNNT2P45379 298 aaPredicted RBP27.17■■□□□ 1.94
USP53-203ENST00000507597 C8orf37Q96NL8 207 aa27.17■■□□□ 1.94
USP53-203ENST00000507597 KIF24Q5T7B8 1368 aa27.17■■□□□ 1.94
USP53-203ENST00000507597 CRYBG1Q9Y4K1 1723 aa27.16■■□□□ 1.94
USP53-203ENST00000507597 ANP32CO43423 234 aa27.15■■□□□ 1.94
USP53-203ENST00000507597 ABCA3Q99758 1704 aa27.15■■□□□ 1.94
USP53-203ENST00000507597 NFAT5O94916 1531 aa27.13■■□□□ 1.93
USP53-203ENST00000507597 FAM83GA6ND36 823 aa27.13■■□□□ 1.93
USP53-203ENST00000507597 LRP6O75581 1613 aa27.12■■□□□ 1.93
USP53-203ENST00000507597 RTL1A6NKG5 1358 aa27.12■■□□□ 1.93
USP53-203ENST00000507597 IP6K1Q92551 441 aa27.12■■□□□ 1.93
USP53-203ENST00000507597 MARF1Q9Y4F3 1742 aaKnown RBP27.12■■□□□ 1.93
USP53-203ENST00000507597 MAP3K19Q56UN5 1328 aa27.12■■□□□ 1.93
USP53-203ENST00000507597 EVA1CP58658 441 aa27.11■■□□□ 1.93
USP53-203ENST00000507597 RRS1Q15050 365 aaKnown RBP27.11■■□□□ 1.93
USP53-203ENST00000507597 CHRNA2Q15822 529 aa27.11■■□□□ 1.93
USP53-203ENST00000507597 PPM1GO15355 546 aaPredicted RBP27.1■■□□□ 1.93
USP53-203ENST00000507597 FNBP4Q8N3X1 1017 aaPredicted RBP27.1■■□□□ 1.93
USP53-203ENST00000507597 PHF23Q9BUL5 403 aaPredicted RBP27.1■■□□□ 1.93
USP53-203ENST00000507597 POLKQ9UBT6 870 aa27.1■■□□□ 1.93
USP53-203ENST00000507597 ABCC6O95255 1503 aa27.1■■□□□ 1.93
USP53-203ENST00000507597 BTG4Q9NY30 223 aa27.09■■□□□ 1.93
USP53-203ENST00000507597 COL14A1Q05707 1796 aaKnown RBP27.09■■□□□ 1.93
USP53-203ENST00000507597 FLT4P35916 1363 aa27.09■■□□□ 1.93
USP53-203ENST00000507597 PARD3Q8TEW0 1356 aa27.09■■□□□ 1.93
USP53-203ENST00000507597 ZNF772Q68DY9 489 aaPredicted RBP27.08■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms