RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 POLR3AO14802 1390 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-206ENST00000505705 PHLPP1O60346 1717 aa11.3□□□□□ -0.6
LIMCH1-206ENST00000505705 ABTB2Q8N961 1025 aa11.3□□□□□ -0.6
LIMCH1-206ENST00000505705 PANK3Q9H999 370 aa11.3□□□□□ -0.6
LIMCH1-206ENST00000505705 SOS2Q07890 1332 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-206ENST00000505705 TOPAZ1Q8N9V7 1692 aa11.3□□□□□ -0.6
LIMCH1-206ENST00000505705 ANKRD36BQ8N2N9 1353 aa11.29□□□□□ -0.6
LIMCH1-206ENST00000505705 HAP1P54257 671 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-206ENST00000505705 A0A1W2PP64 1363 aa11.28□□□□□ -0.6
LIMCH1-206ENST00000505705 NUTM2GQ5VZR2 741 aa11.28□□□□□ -0.6
LIMCH1-206ENST00000505705 ILDR1Q86SU0 546 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-206ENST00000505705 SBNO1A3KN83 1393 aa11.28□□□□□ -0.6
LIMCH1-206ENST00000505705 AHDC1Q5TGY3 1603 aaPredicted RBP11.27□□□□□ -0.6
LIMCH1-206ENST00000505705 USP6P35125 1406 aa11.27□□□□□ -0.6
LIMCH1-206ENST00000505705 NPM3O75607 178 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-206ENST00000505705 KNSTRNQ9Y448 316 aa11.27□□□□□ -0.61
LIMCH1-206ENST00000505705 SPATA31A3Q5VYP0 1347 aa11.27□□□□□ -0.61
LIMCH1-206ENST00000505705 TTC21BQ7Z4L5 1316 aa11.27□□□□□ -0.61
LIMCH1-206ENST00000505705 NHSL1Q5SYE7 1610 aa11.27□□□□□ -0.61
LIMCH1-206ENST00000505705 BRD4O60885 1362 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-206ENST00000505705 CPSF1Q10570 1443 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 PXDNQ92626 1479 aa11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 NUTM2BA6NNL0 878 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 NUTM2EB1AL46 878 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 NLRP6P59044 892 aa11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 DDX10Q13206 875 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 CNGB1Q14028 1251 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 NLRP13Q86W25 1043 aa11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 NUTM2AQ8IVF1 878 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 TTC21AQ8NDW8 1320 aa11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 ARHGEF10O15013 1369 aa11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 JCADQ9P266 1359 aa11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 TNS3Q68CZ2 1445 aa11.26□□□□□ -0.61
LIMCH1-206ENST00000505705 CD163L1Q9NR16 1453 aa11.25□□□□□ -0.61
LIMCH1-206ENST00000505705 EDC4Q6P2E9 1401 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-206ENST00000505705 NSD3Q9BZ95 1437 aa11.25□□□□□ -0.61
LIMCH1-206ENST00000505705 NME9Q86XW9 330 aa11.24□□□□□ -0.61
LIMCH1-206ENST00000505705 CARD14Q9BXL6 1004 aa11.24□□□□□ -0.61
LIMCH1-206ENST00000505705 CGNL1Q0VF96 1302 aa11.24□□□□□ -0.61
LIMCH1-206ENST00000505705 COL16A1Q07092 1604 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-206ENST00000505705 AKAP12Q02952 1782 aa11.23□□□□□ -0.61
LIMCH1-206ENST00000505705 SOX12O15370 315 aa11.23□□□□□ -0.61
LIMCH1-206ENST00000505705 MEX3CQ5U5Q3 659 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-206ENST00000505705 CABLES1Q8TDN4 633 aa11.23□□□□□ -0.61
LIMCH1-206ENST00000505705 COG3Q96JB2 828 aa11.23□□□□□ -0.61
LIMCH1-206ENST00000505705 GGNBP2Q9H3C7 697 aa11.23□□□□□ -0.61
LIMCH1-206ENST00000505705 MYOM1P52179 1685 aa11.23□□□□□ -0.61
LIMCH1-206ENST00000505705 ZBTB7CA1YPR0 619 aa11.22□□□□□ -0.61
LIMCH1-206ENST00000505705 PNPLA6Q8IY17 1366 aa11.22□□□□□ -0.61
LIMCH1-206ENST00000505705 SPATA31A6Q5VVP1 1343 aa11.21□□□□□ -0.61
LIMCH1-206ENST00000505705 FYB1O15117 783 aa11.21□□□□□ -0.61
LIMCH1-206ENST00000505705 ZRANB1Q9UGI0 708 aa11.21□□□□□ -0.61
LIMCH1-206ENST00000505705 MON2Q7Z3U7 1717 aa11.21□□□□□ -0.62
LIMCH1-206ENST00000505705 TRPM3Q9HCF6 1732 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-206ENST00000505705 SSH2Q76I76 1423 aa11.2□□□□□ -0.62
LIMCH1-206ENST00000505705 ADAMTS2O95450 1211 aa11.2□□□□□ -0.62
LIMCH1-206ENST00000505705 CC2D1BQ5T0F9 858 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-206ENST00000505705 KCNH5Q8NCM2 988 aa11.2□□□□□ -0.62
LIMCH1-206ENST00000505705 GCP02774 474 aa11.19□□□□□ -0.62
LIMCH1-206ENST00000505705 ZC3H6P61129 1189 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-206ENST00000505705 MORC1Q86VD1 984 aa11.19□□□□□ -0.62
LIMCH1-206ENST00000505705 PER1O15534 1290 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-206ENST00000505705 TNNT2P45379 298 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-206ENST00000505705 NRKQ7Z2Y5 1582 aa11.18□□□□□ -0.62
LIMCH1-206ENST00000505705 ALS2Q96Q42 1657 aa11.17□□□□□ -0.62
LIMCH1-206ENST00000505705 USP31Q70CQ4 1352 aa11.17□□□□□ -0.62
LIMCH1-206ENST00000505705 C8orf37Q96NL8 207 aa11.17□□□□□ -0.62
LIMCH1-206ENST00000505705 SHPRHQ149N8 1683 aa11.17□□□□□ -0.62
LIMCH1-206ENST00000505705 AMER1Q5JTC6 1135 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-206ENST00000505705 NGLY1Q96IV0 654 aa11.16□□□□□ -0.62
LIMCH1-206ENST00000505705 PRDM11Q9NQV5 511 aa11.16□□□□□ -0.62
LIMCH1-206ENST00000505705 PIK3C2AO00443 1686 aa11.16□□□□□ -0.62
LIMCH1-206ENST00000505705 NSD2O96028 1365 aa11.16□□□□□ -0.62
LIMCH1-206ENST00000505705 USP19O94966 1318 aa11.15□□□□□ -0.62
LIMCH1-206ENST00000505705 PPM1GO15355 546 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-206ENST00000505705 AMPHP49418 695 aa11.15□□□□□ -0.62
LIMCH1-206ENST00000505705 COL22A1Q8NFW1 1626 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-206ENST00000505705 FBLN1P23142 703 aa11.14□□□□□ -0.63
LIMCH1-206ENST00000505705 CHRNA2Q15822 529 aa11.14□□□□□ -0.63
LIMCH1-206ENST00000505705 MED1Q15648 1581 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-206ENST00000505705 KIF20BQ96Q89 1820 aa11.14□□□□□ -0.63
LIMCH1-206ENST00000505705 OVOS2A0A0J9YW53 1432 aa11.13□□□□□ -0.63
LIMCH1-206ENST00000505705 OVOS2Q6IE36 1432 aa11.13□□□□□ -0.63
LIMCH1-206ENST00000505705 FAM83GA6ND36 823 aa11.13□□□□□ -0.63
LIMCH1-206ENST00000505705 EVA1CP58658 441 aa11.13□□□□□ -0.63
LIMCH1-206ENST00000505705 RRS1Q15050 365 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-206ENST00000505705 KIAA0232Q92628 1395 aa11.13□□□□□ -0.63
LIMCH1-206ENST00000505705 SLIT3O75094 1523 aa11.11□□□□□ -0.63
LIMCH1-206ENST00000505705 LRP6O75581 1613 aa11.11□□□□□ -0.63
LIMCH1-206ENST00000505705 PHRF1Q9P1Y6 1649 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-206ENST00000505705 ANP32CO43423 234 aa11.11□□□□□ -0.63
LIMCH1-206ENST00000505705 ARHGEF25Q86VW2 580 aa11.11□□□□□ -0.63
LIMCH1-206ENST00000505705 STRN4Q9NRL3 753 aa11.11□□□□□ -0.63
LIMCH1-206ENST00000505705 BTG4Q9NY30 223 aa11.11□□□□□ -0.63
LIMCH1-206ENST00000505705 NPC1L1Q9UHC9 1359 aa11.11□□□□□ -0.63
LIMCH1-206ENST00000505705 CSB-PGBD3P0DP91 1061 aa11.1□□□□□ -0.63
LIMCH1-206ENST00000505705 RALBP1Q15311 655 aa11.1□□□□□ -0.63
LIMCH1-206ENST00000505705 USP21Q9UK80 565 aa11.1□□□□□ -0.63
LIMCH1-206ENST00000505705 CCDC9Q9Y3X0 531 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-206ENST00000505705 CPDO75976 1380 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms