RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 TERF2IPQ9NYB0 399 aa12.71□□□□□ -0.37
CLIP1-204ENST00000501271 AGLP35573 1532 aa12.71□□□□□ -0.38
CLIP1-204ENST00000501271 U2SURPO15042 1029 aaKnown RBP12.71□□□□□ -0.38
CLIP1-204ENST00000501271 RTL5Q5HYW3 569 aaPredicted RBP12.71□□□□□ -0.38
CLIP1-204ENST00000501271 MYH16Q9H6N6 1097 aa12.71□□□□□ -0.38
CLIP1-204ENST00000501271 SPATA31D1Q6ZQQ2 1576 aa12.7□□□□□ -0.38
CLIP1-204ENST00000501271 A2ML1A8K2U0 1454 aa12.7□□□□□ -0.38
CLIP1-204ENST00000501271 CDK19Q9BWU1 502 aa12.7□□□□□ -0.38
CLIP1-204ENST00000501271 STAG3Q9UJ98 1225 aa12.7□□□□□ -0.38
CLIP1-204ENST00000501271 ADRA2BP18089 450 aa12.69□□□□□ -0.38
CLIP1-204ENST00000501271 TSR2Q969E8 191 aaKnown RBP12.69□□□□□ -0.38
CLIP1-204ENST00000501271 DLC1Q96QB1 1528 aa12.69□□□□□ -0.38
CLIP1-204ENST00000501271 TMPOP42166 694 aaKnown RBP12.68□□□□□ -0.38
CLIP1-204ENST00000501271 CABP1Q9NZU7 370 aa12.68□□□□□ -0.38
CLIP1-204ENST00000501271 TRIM35Q9UPQ4 493 aa12.68□□□□□ -0.38
CLIP1-204ENST00000501271 PCDHB15Q9Y5E8 787 aa12.68□□□□□ -0.38
CLIP1-204ENST00000501271 HDGFL2Q7Z4V5 671 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-204ENST00000501271 NRXN3Q9Y4C0 1643 aa12.67□□□□□ -0.38
CLIP1-204ENST00000501271 SLC4A3P48751 1232 aa12.67□□□□□ -0.38
CLIP1-204ENST00000501271 RIMS2Q9UQ26 1411 aa12.67□□□□□ -0.38
CLIP1-204ENST00000501271 PNPLA6Q8IY17 1366 aa12.67□□□□□ -0.38
CLIP1-204ENST00000501271 MAPK8IP3Q9UPT6 1336 aa12.66□□□□□ -0.38
CLIP1-204ENST00000501271 CDC42BPGQ6DT37 1551 aa12.66□□□□□ -0.38
CLIP1-204ENST00000501271 NEFMP07197 916 aa12.66□□□□□ -0.38
CLIP1-204ENST00000501271 WAPLQ7Z5K2 1190 aa12.66□□□□□ -0.38
CLIP1-204ENST00000501271 LRRC7Q96NW7 1537 aa12.66□□□□□ -0.38
CLIP1-204ENST00000501271 AAMPQ13685 434 aa12.66□□□□□ -0.38
CLIP1-204ENST00000501271 MAP2P11137 1827 aaKnown RBP12.65□□□□□ -0.38
CLIP1-204ENST00000501271 ATP7BP35670 1465 aa12.65□□□□□ -0.38
CLIP1-204ENST00000501271 DIAPH1O60610 1272 aaKnown RBP12.65□□□□□ -0.38
CLIP1-204ENST00000501271 EXOSC9Q06265 439 aaKnown RBP12.65□□□□□ -0.38
CLIP1-204ENST00000501271 PMFBP1Q8TBY8 1022 aa12.65□□□□□ -0.38
CLIP1-204ENST00000501271 PPM1GO15355 546 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-204ENST00000501271 CT47B1P0C2W7 299 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-204ENST00000501271 MVPQ14764 893 aaKnown RBP12.64□□□□□ -0.39
CLIP1-204ENST00000501271 ZKSCAN2Q63HK3 967 aa12.64□□□□□ -0.39
CLIP1-204ENST00000501271 MLECQ14165 292 aa12.63□□□□□ -0.39
CLIP1-204ENST00000501271 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLIP1-204ENST00000501271 USP19O94966 1318 aa12.63□□□□□ -0.39
CLIP1-204ENST00000501271 FBLN1P23142 703 aa12.63□□□□□ -0.39
CLIP1-204ENST00000501271 RIPK4P57078 832 aa12.63□□□□□ -0.39
CLIP1-204ENST00000501271 SMC4Q9NTJ3 1288 aa12.63□□□□□ -0.39
CLIP1-204ENST00000501271 DZIP1LQ8IYY4 767 aaKnown RBP12.62□□□□□ -0.39
CLIP1-204ENST00000501271 USP35Q9P2H5 1018 aa12.62□□□□□ -0.39
CLIP1-204ENST00000501271 IL16Q14005 1332 aa12.62□□□□□ -0.39
CLIP1-204ENST00000501271 SEC24BO95487 1268 aa12.62□□□□□ -0.39
CLIP1-204ENST00000501271 FTSJ3Q8IY81 847 aaKnown RBP12.62□□□□□ -0.39
CLIP1-204ENST00000501271 SSH1Q8WYL5 1049 aa12.62□□□□□ -0.39
CLIP1-204ENST00000501271 TRIM27P14373 513 aa12.61□□□□□ -0.39
CLIP1-204ENST00000501271 PDZRN3Q9UPQ7 1066 aa12.61□□□□□ -0.39
CLIP1-204ENST00000501271 FAM135BQ49AJ0 1406 aa12.61□□□□□ -0.39
CLIP1-204ENST00000501271 POLKQ9UBT6 870 aa12.61□□□□□ -0.39
CLIP1-204ENST00000501271 DAXXQ9UER7 740 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-204ENST00000501271 METP08581 1390 aa12.61□□□□□ -0.39
CLIP1-204ENST00000501271 KNDC1Q76NI1 1749 aa12.61□□□□□ -0.39
CLIP1-204ENST00000501271 CPSF1Q10570 1443 aaKnown RBP12.6□□□□□ -0.39
CLIP1-204ENST00000501271 PPIP5K1Q6PFW1 1433 aa12.6□□□□□ -0.39
CLIP1-204ENST00000501271 RSPH6AQ9H0K4 717 aa12.6□□□□□ -0.39
CLIP1-204ENST00000501271 RWDD1Q9H446 243 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-204ENST00000501271 KIF13AQ9H1H9 1805 aa12.6□□□□□ -0.39
CLIP1-204ENST00000501271 MON2Q7Z3U7 1717 aa12.6□□□□□ -0.39
CLIP1-204ENST00000501271 ZMYM3Q14202 1370 aa12.59□□□□□ -0.39
CLIP1-204ENST00000501271 FCHSD2O94868 740 aa12.59□□□□□ -0.39
CLIP1-204ENST00000501271 PRKAR2BP31323 418 aa12.59□□□□□ -0.39
CLIP1-204ENST00000501271 PNNQ9H307 717 aaKnown RBP12.59□□□□□ -0.39
CLIP1-204ENST00000501271 EDC4Q6P2E9 1401 aaKnown RBP12.58□□□□□ -0.39
CLIP1-204ENST00000501271 ATF7IPQ6VMQ6 1270 aa12.58□□□□□ -0.4
CLIP1-204ENST00000501271 NOB1Q9ULX3 412 aaKnown RBP12.58□□□□□ -0.4
CLIP1-204ENST00000501271 WASLO00401 505 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-204ENST00000501271 AKAP12Q02952 1782 aa12.58□□□□□ -0.4
CLIP1-204ENST00000501271 ITSN1Q15811 1721 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 NFKBIBQ15653 356 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 NME9Q86XW9 330 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 ITPRIPQ8IWB1 547 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 EMILIN1Q9Y6C2 1016 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 DLG5Q8TDM6 1919 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 CPS1P31327 1500 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 CDK12Q9NYV4 1490 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-204ENST00000501271 TXNDC2Q86VQ3 553 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 ZRANB1Q9UGI0 708 aa12.57□□□□□ -0.4
CLIP1-204ENST00000501271 C3P01024 1663 aa12.56□□□□□ -0.4
CLIP1-204ENST00000501271 NCKAP5LQ9HCH0 1330 aa12.56□□□□□ -0.4
CLIP1-204ENST00000501271 HMOX1P09601 288 aa12.56□□□□□ -0.4
CLIP1-204ENST00000501271 PHACTR3Q96KR7 559 aa12.56□□□□□ -0.4
CLIP1-204ENST00000501271 DDX19BQ9UMR2 479 aa12.56□□□□□ -0.4
CLIP1-204ENST00000501271 TMEM57Q8N5G2 664 aa12.56□□□□□ -0.4
CLIP1-204ENST00000501271 TECPR2O15040 1411 aa12.55□□□□□ -0.4
CLIP1-204ENST00000501271 UBR1Q8IWV7 1749 aa12.55□□□□□ -0.4
CLIP1-204ENST00000501271 KIF16BQ96L93 1317 aa12.55□□□□□ -0.4
CLIP1-204ENST00000501271 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLIP1-204ENST00000501271 IL13P35225 146 aa12.54□□□□□ -0.4
CLIP1-204ENST00000501271 HDAC1Q13547 482 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-204ENST00000501271 NFE2L2Q16236 605 aa12.54□□□□□ -0.4
CLIP1-204ENST00000501271 NUDT16Q96DE0 195 aaKnown RBP12.54□□□□□ -0.4
CLIP1-204ENST00000501271 THUMPD2Q9BTF0 503 aaKnown RBP12.54□□□□□ -0.4
CLIP1-204ENST00000501271 ALDH1L2Q3SY69 923 aa12.53□□□□□ -0.4
CLIP1-204ENST00000501271 AATKQ6ZMQ8 1374 aa12.53□□□□□ -0.4
CLIP1-204ENST00000501271 ZBTB40Q9NUA8 1239 aa12.52□□□□□ -0.4
CLIP1-204ENST00000501271 ESF1Q9H501 851 aaKnown RBP12.52□□□□□ -0.41
CLIP1-204ENST00000501271 TNRQ92752 1358 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms