RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 SSH2Q76I76 1423 aa29.89■■■□□ 2.38
C9orf3-222ENST00000496567 PAK3O75914 559 aaPredicted RBP29.89■■■□□ 2.38
C9orf3-222ENST00000496567 NSD3Q9BZ95 1437 aa29.89■■■□□ 2.37
C9orf3-222ENST00000496567 TTC21BQ7Z4L5 1316 aa29.88■■■□□ 2.37
C9orf3-222ENST00000496567 TTC21AQ8NDW8 1320 aa29.88■■■□□ 2.37
C9orf3-222ENST00000496567 NRKQ7Z2Y5 1582 aa29.88■■■□□ 2.37
C9orf3-222ENST00000496567 TRPM3Q9HCF6 1732 aaPredicted RBP29.88■■■□□ 2.37
C9orf3-222ENST00000496567 KNSTRNQ9Y448 316 aa29.87■■■□□ 2.37
C9orf3-222ENST00000496567 LRRC59Q96AG4 307 aaKnown RBP29.86■■■□□ 2.37
C9orf3-222ENST00000496567 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.85■■■□□ 2.374e-9■□□□□ 9.6
C9orf3-222ENST00000496567 SPATA31A3Q5VYP0 1347 aa29.84■■■□□ 2.37
C9orf3-222ENST00000496567 TNS3Q68CZ2 1445 aa29.83■■■□□ 2.37
C9orf3-222ENST00000496567 COL16A1Q07092 1604 aaPredicted RBP29.83■■■□□ 2.37
C9orf3-222ENST00000496567 PER1O15534 1290 aaPredicted RBP29.83■■■□□ 2.37
C9orf3-222ENST00000496567 CGNL1Q0VF96 1302 aa29.83■■■□□ 2.37
C9orf3-222ENST00000496567 ARHGEF10O15013 1369 aa29.81■■■□□ 2.36
C9orf3-222ENST00000496567 LMOD2Q6P5Q4 547 aa29.81■■■□□ 2.36
C9orf3-222ENST00000496567 ABTB2Q8N961 1025 aa29.81■■■□□ 2.36
C9orf3-222ENST00000496567 HSPA1LP34931 641 aa29.79■■■□□ 2.36
C9orf3-222ENST00000496567 ALS2Q96Q42 1657 aa29.79■■■□□ 2.36
C9orf3-222ENST00000496567 NME9Q86XW9 330 aa29.77■■■□□ 2.36
C9orf3-222ENST00000496567 FYB1O15117 783 aa29.76■■■□□ 2.35
C9orf3-222ENST00000496567 PIK3C2AO00443 1686 aa29.75■■■□□ 2.35
C9orf3-222ENST00000496567 KIF20BQ96Q89 1820 aa29.75■■■□□ 2.35
C9orf3-222ENST00000496567 NLRP6P59044 892 aa29.74■■■□□ 2.35
C9orf3-222ENST00000496567 AMER1Q5JTC6 1135 aaPredicted RBP29.74■■■□□ 2.35
C9orf3-222ENST00000496567 NLRP13Q86W25 1043 aa29.74■■■□□ 2.35
C9orf3-222ENST00000496567 NSD2O96028 1365 aa29.74■■■□□ 2.35
C9orf3-222ENST00000496567 USP31Q70CQ4 1352 aa29.73■■■□□ 2.35
C9orf3-222ENST00000496567 NPC1L1Q9UHC9 1359 aa29.72■■■□□ 2.35
C9orf3-222ENST00000496567 NUTM2GQ5VZR2 741 aa29.72■■■□□ 2.35
C9orf3-222ENST00000496567 GGNBP2Q9H3C7 697 aa29.72■■■□□ 2.35
C9orf3-222ENST00000496567 COG3Q96JB2 828 aa29.71■■■□□ 2.35
C9orf3-222ENST00000496567 PNPLA6Q8IY17 1366 aa29.7■■■□□ 2.35
C9orf3-222ENST00000496567 JCADQ9P266 1359 aa29.7■■■□□ 2.35
C9orf3-222ENST00000496567 ZRANB1Q9UGI0 708 aa29.69■■■□□ 2.34
C9orf3-222ENST00000496567 USP54Q70EL1 1684 aa29.68■■■□□ 2.34
C9orf3-222ENST00000496567 OVOS2A0A0J9YW53 1432 aa29.68■■■□□ 2.34
C9orf3-222ENST00000496567 OVOS2Q6IE36 1432 aa29.68■■■□□ 2.34
C9orf3-222ENST00000496567 MED1Q15648 1581 aaPredicted RBP29.67■■■□□ 2.34
C9orf3-222ENST00000496567 SHPRHQ149N8 1683 aa29.66■■■□□ 2.34
C9orf3-222ENST00000496567 COL22A1Q8NFW1 1626 aaPredicted RBP29.66■■■□□ 2.34
C9orf3-222ENST00000496567 CC2D1BQ5T0F9 858 aaKnown RBP29.66■■■□□ 2.34
C9orf3-222ENST00000496567 USP19O94966 1318 aa29.66■■■□□ 2.34
C9orf3-222ENST00000496567 ANKRD26Q9UPS8 1709 aa29.65■■■□□ 2.34
C9orf3-222ENST00000496567 MORC1Q86VD1 984 aa29.63■■■□□ 2.33
C9orf3-222ENST00000496567 KCNH5Q8NCM2 988 aa29.62■■■□□ 2.33
C9orf3-222ENST00000496567 MARF1Q9Y4F3 1742 aaKnown RBP29.62■■■□□ 2.33
C9orf3-222ENST00000496567 PLEKHG5O94827 1062 aa29.61■■■□□ 2.33
C9orf3-222ENST00000496567 HAP1P54257 671 aaPredicted RBP29.6■■■□□ 2.33
C9orf3-222ENST00000496567 CNGB1Q14028 1251 aaPredicted RBP29.6■■■□□ 2.33
C9orf3-222ENST00000496567 CABLES1Q8TDN4 633 aa29.6■■■□□ 2.33
C9orf3-222ENST00000496567 SLIT3O75094 1523 aa29.6■■■□□ 2.33
C9orf3-222ENST00000496567 SPATA31A6Q5VVP1 1343 aa29.59■■■□□ 2.33
C9orf3-222ENST00000496567 GCP02774 474 aa29.59■■■□□ 2.33
C9orf3-222ENST00000496567 CRYBG1Q9Y4K1 1723 aa29.59■■■□□ 2.33
C9orf3-222ENST00000496567 PHRF1Q9P1Y6 1649 aaKnown RBP29.58■■■□□ 2.33
C9orf3-222ENST00000496567 ABCA3Q99758 1704 aa29.56■■■□□ 2.32
C9orf3-222ENST00000496567 SOX12O15370 315 aa29.54■■■□□ 2.32
C9orf3-222ENST00000496567 RALBP1Q15311 655 aa29.53■■■□□ 2.32
C9orf3-222ENST00000496567 TNNT2P45379 298 aaPredicted RBP29.52■■■□□ 2.32
C9orf3-222ENST00000496567 DIEXFQ68CQ4 756 aaKnown RBP29.52■■■□□ 2.32
C9orf3-222ENST00000496567 NFAT5O94916 1531 aa29.52■■■□□ 2.32
C9orf3-222ENST00000496567 AATKQ6ZMQ8 1374 aa29.52■■■□□ 2.32
C9orf3-222ENST00000496567 PARD3Q8TEW0 1356 aa29.52■■■□□ 2.32
C9orf3-222ENST00000496567 NUTM2BA6NNL0 878 aaPredicted RBP29.52■■■□□ 2.32
C9orf3-222ENST00000496567 NUTM2EB1AL46 878 aaPredicted RBP29.52■■■□□ 2.32
C9orf3-222ENST00000496567 NUTM2AQ8IVF1 878 aaPredicted RBP29.52■■■□□ 2.32
C9orf3-222ENST00000496567 ANP32CO43423 234 aa29.51■■■□□ 2.31
C9orf3-222ENST00000496567 ZC3H6P61129 1189 aaKnown RBP29.49■■■□□ 2.31
C9orf3-222ENST00000496567 PRKRIP1Q9H875 184 aaPredicted RBP29.49■■■□□ 2.31
C9orf3-222ENST00000496567 ILDR1Q86SU0 546 aaPredicted RBP29.48■■■□□ 2.31
C9orf3-222ENST00000496567 CPDO75976 1380 aa29.48■■■□□ 2.31
C9orf3-222ENST00000496567 FBLN1P23142 703 aa29.46■■■□□ 2.31
C9orf3-222ENST00000496567 ARHGEF25Q86VW2 580 aa29.46■■■□□ 2.31
C9orf3-222ENST00000496567 KIAA0232Q92628 1395 aa29.45■■■□□ 2.3
C9orf3-222ENST00000496567 ADAMTS2O95450 1211 aa29.44■■■□□ 2.3
C9orf3-222ENST00000496567 RRS1Q15050 365 aaKnown RBP29.44■■■□□ 2.3
C9orf3-222ENST00000496567 PRDM11Q9NQV5 511 aa29.44■■■□□ 2.3
C9orf3-222ENST00000496567 MAP2P11137 1827 aaKnown RBP29.43■■■□□ 2.3
C9orf3-222ENST00000496567 MAP3K19Q56UN5 1328 aa29.43■■■□□ 2.3
C9orf3-222ENST00000496567 POLKQ9UBT6 870 aa29.43■■■□□ 2.3
C9orf3-222ENST00000496567 ZBTB7CA1YPR0 619 aa29.42■■■□□ 2.3
C9orf3-222ENST00000496567 LTN1O94822 1766 aa29.42■■■□□ 2.3
C9orf3-222ENST00000496567 LRP6O75581 1613 aa29.41■■■□□ 2.3
C9orf3-222ENST00000496567 KIF24Q5T7B8 1368 aa29.41■■■□□ 2.3
C9orf3-222ENST00000496567 PPP2R1AP30153 589 aa29.41■■■□□ 2.3
C9orf3-222ENST00000496567 AMPHP49418 695 aa29.4■■■□□ 2.3
C9orf3-222ENST00000496567 EMILIN1Q9Y6C2 1016 aa29.4■■■□□ 2.3
C9orf3-222ENST00000496567 MYBBP1AQ9BQG0 1328 aaKnown RBP29.4■■■□□ 2.3
C9orf3-222ENST00000496567 RTL1A6NKG5 1358 aa29.39■■■□□ 2.3
C9orf3-222ENST00000496567 MEX3CQ5U5Q3 659 aaKnown RBP29.39■■■□□ 2.29
C9orf3-222ENST00000496567 SMG6Q86US8 1419 aaKnown RBP29.38■■■□□ 2.29
C9orf3-222ENST00000496567 FAM83GA6ND36 823 aa29.38■■■□□ 2.29
C9orf3-222ENST00000496567 PPM1GO15355 546 aaPredicted RBP29.38■■■□□ 2.29
C9orf3-222ENST00000496567 ABCC6O95255 1503 aa29.37■■■□□ 2.29
C9orf3-222ENST00000496567 MTHFSP49914 203 aa29.37■■■□□ 2.29
C9orf3-222ENST00000496567 CHRNA2Q15822 529 aa29.37■■■□□ 2.29
C9orf3-222ENST00000496567 FLT4P35916 1363 aa29.37■■■□□ 2.29
C9orf3-222ENST00000496567 COL14A1Q05707 1796 aaKnown RBP29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms