RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ADGRL3Q9HAR2 1447 aa17.93■□□□□ 0.46
UPF3A-210ENST00000493727 METP08581 1390 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 LAMC1P11047 1609 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 SOX12O15370 315 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 C7P10643 843 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 RXRBP28702 533 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 BBXQ8WY36 941 aaPredicted RBP17.92■□□□□ 0.46
UPF3A-210ENST00000493727 KIF1BO60333 1816 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 NEXMIFQ5QGS0 1516 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 NAIPQ13075 1403 aa17.91■□□□□ 0.46
UPF3A-210ENST00000493727 AFF2P51816 1311 aa17.91■□□□□ 0.46
UPF3A-210ENST00000493727 RGS12O14924 1447 aa17.9■□□□□ 0.46
UPF3A-210ENST00000493727 IRX5P78411 483 aaPredicted RBP17.9■□□□□ 0.46
UPF3A-210ENST00000493727 METRNQ9UJH8 293 aa17.9■□□□□ 0.46
UPF3A-210ENST00000493727 CLTCL1P53675 1640 aa17.9■□□□□ 0.46
UPF3A-210ENST00000493727 PNPLA6Q8IY17 1366 aa17.9■□□□□ 0.46
UPF3A-210ENST00000493727 NUTM2BA6NNL0 878 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-210ENST00000493727 NUTM2EB1AL46 878 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-210ENST00000493727 ZNF326Q5BKZ1 582 aaKnown RBP17.89■□□□□ 0.45
UPF3A-210ENST00000493727 NUTM2AQ8IVF1 878 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-210ENST00000493727 MFRPQ9BY79 579 aa17.88■□□□□ 0.45
UPF3A-210ENST00000493727 POTEFA5A3E0 1075 aa17.87■□□□□ 0.45
UPF3A-210ENST00000493727 ACIN1Q9UKV3 1341 aaKnown RBP17.87■□□□□ 0.45
UPF3A-210ENST00000493727 RAB3GAP2Q9H2M9 1393 aa17.87■□□□□ 0.45
UPF3A-210ENST00000493727 LRRC59Q96AG4 307 aaKnown RBP17.86■□□□□ 0.45
UPF3A-210ENST00000493727 PHF8Q9UPP1 1060 aa17.86■□□□□ 0.45
UPF3A-210ENST00000493727 EP400Q96L91 3159 aa17.86■□□□□ 0.45
UPF3A-210ENST00000493727 DDX17Q92841 729 aaKnown RBP17.85■□□□□ 0.45
UPF3A-210ENST00000493727 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.85■□□□□ 0.45
UPF3A-210ENST00000493727 COLQQ9Y215 455 aaPredicted RBP17.85■□□□□ 0.45
UPF3A-210ENST00000493727 C1orf167Q5SNV9 1468 aa17.84■□□□□ 0.45
UPF3A-210ENST00000493727 PTCH1Q13635 1447 aa17.84■□□□□ 0.45
UPF3A-210ENST00000493727 PRAG1Q86YV5 1406 aa17.84■□□□□ 0.45
UPF3A-210ENST00000493727 FBXO22Q8NEZ5 403 aa17.84■□□□□ 0.45
UPF3A-210ENST00000493727 OCEL1Q9H607 264 aa17.82■□□□□ 0.44
UPF3A-210ENST00000493727 RBM6P78332 1123 aaKnown RBP17.81■□□□□ 0.44
UPF3A-210ENST00000493727 PDCD7Q8N8D1 485 aaKnown RBP17.81■□□□□ 0.44
UPF3A-210ENST00000493727 C8orf37Q96NL8 207 aa17.81■□□□□ 0.44
UPF3A-210ENST00000493727 COL22A1Q8NFW1 1626 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-210ENST00000493727 NLRP6P59044 892 aa17.8■□□□□ 0.44
UPF3A-210ENST00000493727 MS4A4AQ96JQ5 239 aa17.8■□□□□ 0.44
UPF3A-210ENST00000493727 QTRT2Q9H974 415 aaKnown RBP17.79■□□□□ 0.44
UPF3A-210ENST00000493727 SOS2Q07890 1332 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-210ENST00000493727 SEC24BO95487 1268 aa17.78■□□□□ 0.44
UPF3A-210ENST00000493727 HRCP23327 699 aa17.78■□□□□ 0.44
UPF3A-210ENST00000493727 ROBO2Q9HCK4 1378 aa17.78■□□□□ 0.44
UPF3A-210ENST00000493727 RPGRIP1LQ68CZ1 1315 aa17.77■□□□□ 0.44
UPF3A-210ENST00000493727 PLCG2P16885 1265 aa17.77■□□□□ 0.44
UPF3A-210ENST00000493727 GTPBP6O43824 516 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-210ENST00000493727 PPLO60437 1756 aa17.76■□□□□ 0.43
UPF3A-210ENST00000493727 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.75■□□□□ 0.43
UPF3A-210ENST00000493727 MYOM2P54296 1465 aa17.74■□□□□ 0.43
UPF3A-210ENST00000493727 CDC42BPGQ6DT37 1551 aa17.74■□□□□ 0.43
UPF3A-210ENST00000493727 MARF1Q9Y4F3 1742 aaKnown RBP17.73■□□□□ 0.43
UPF3A-210ENST00000493727 ADAMTS2O95450 1211 aa17.73■□□□□ 0.43
UPF3A-210ENST00000493727 ORAI2Q96SN7 254 aa17.73■□□□□ 0.43
UPF3A-210ENST00000493727 ATAD2Q6PL18 1390 aa17.73■□□□□ 0.43
UPF3A-210ENST00000493727 ATRNO75882 1429 aa17.72■□□□□ 0.43
UPF3A-210ENST00000493727 DPY19L2Q6NUT2 758 aa17.72■□□□□ 0.43
UPF3A-210ENST00000493727 FNBP4Q8N3X1 1017 aaPredicted RBP17.72■□□□□ 0.43
UPF3A-210ENST00000493727 NGLY1Q96IV0 654 aa17.72■□□□□ 0.43
UPF3A-210ENST00000493727 PXDNQ92626 1479 aa17.7■□□□□ 0.42
UPF3A-210ENST00000493727 USP21Q9UK80 565 aa17.7■□□□□ 0.42
UPF3A-210ENST00000493727 RYDENQ9NUL5 291 aaKnown RBP17.69■□□□□ 0.42
UPF3A-210ENST00000493727 TRPC5Q9UL62 973 aaPredicted RBP17.69■□□□□ 0.42
UPF3A-210ENST00000493727 CCDC144AA2RUR9 1427 aa17.69■□□□□ 0.42
UPF3A-210ENST00000493727 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.68■□□□□ 0.42
UPF3A-210ENST00000493727 POTEB2H3BUK9 544 aa17.67■□□□□ 0.42
UPF3A-210ENST00000493727 CCER1Q8TC90 406 aaPredicted RBP17.67■□□□□ 0.42
UPF3A-210ENST00000493727 BCL9LQ86UU0 1499 aa17.67■□□□□ 0.42
UPF3A-210ENST00000493727 SPRYD3Q8NCJ5 442 aa17.66■□□□□ 0.42
UPF3A-210ENST00000493727 PPP1R37O75864 691 aa17.65■□□□□ 0.42
UPF3A-210ENST00000493727 DHX57Q6P158 1386 aaKnown RBP17.65■□□□□ 0.42
UPF3A-210ENST00000493727 TECPR2O15040 1411 aa17.64■□□□□ 0.42
UPF3A-210ENST00000493727 PAXIP1Q6ZW49 1069 aaPredicted RBP17.64■□□□□ 0.41
UPF3A-210ENST00000493727 MPHOSPH9Q99550 1183 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 NPHP3Q7Z494 1330 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 ANKRD30BQ9BXX2 1392 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 KNDC1Q76NI1 1749 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 IFT172Q9UG01 1749 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 SPATA31E1Q6ZUB1 1445 aa17.61■□□□□ 0.41
UPF3A-210ENST00000493727 GLI3P10071 1580 aa17.61■□□□□ 0.41
UPF3A-210ENST00000493727 FMN2Q9NZ56 1722 aa17.61■□□□□ 0.41
UPF3A-210ENST00000493727 POTEJP0CG39 1038 aa17.6■□□□□ 0.41
UPF3A-210ENST00000493727 CFAP44Q96MT7 982 aa17.6■□□□□ 0.41
UPF3A-210ENST00000493727 KIF1AQ12756 1690 aa17.59■□□□□ 0.41
UPF3A-210ENST00000493727 SLIT2O94813 1529 aa17.59■□□□□ 0.41
UPF3A-210ENST00000493727 ESCO1Q5FWF5 840 aa17.59■□□□□ 0.41
UPF3A-210ENST00000493727 USP32Q8NFA0 1604 aa17.58■□□□□ 0.41
UPF3A-210ENST00000493727 ADGRF5Q8IZF2 1346 aa17.58■□□□□ 0.4
UPF3A-210ENST00000493727 RGL3Q3MIN7 710 aa17.58■□□□□ 0.4
UPF3A-210ENST00000493727 BRWD3Q6RI45 1802 aa17.58■□□□□ 0.4
UPF3A-210ENST00000493727 L3MBTL3Q96JM7 780 aaPredicted RBP17.57■□□□□ 0.4
UPF3A-210ENST00000493727 FOXO3O43524 673 aa17.56■□□□□ 0.4
UPF3A-210ENST00000493727 XPCQ01831 940 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-210ENST00000493727 CCDC125Q86Z20 511 aa17.56■□□□□ 0.4
UPF3A-210ENST00000493727 GJD4Q96KN9 370 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-210ENST00000493727 RALGAPBQ86X10 1494 aa17.56■□□□□ 0.4
UPF3A-210ENST00000493727 LRPPRCP42704 1394 aaKnown RBP17.55■□□□□ 0.4
UPF3A-210ENST00000493727 PLCB2Q00722 1185 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms