RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 NPHP3Q7Z494 1330 aa15.45■□□□□ 0.06
COL6A3-214ENST00000493608 NEUROD1Q13562 356 aa15.45■□□□□ 0.06
COL6A3-214ENST00000493608 DLC1Q96QB1 1528 aa15.44■□□□□ 0.06
COL6A3-214ENST00000493608 PAK3O75914 559 aaPredicted RBP15.44■□□□□ 0.06
COL6A3-214ENST00000493608 AFF2P51816 1311 aa15.43■□□□□ 0.06
COL6A3-214ENST00000493608 NBPF1Q3BBV0 1214 aa15.43■□□□□ 0.06
COL6A3-214ENST00000493608 ZNF772Q68DY9 489 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-214ENST00000493608 PXDNQ92626 1479 aa15.43■□□□□ 0.06
COL6A3-214ENST00000493608 KRT28Q7Z3Y7 464 aa15.42■□□□□ 0.06
COL6A3-214ENST00000493608 PMFBP1Q8TBY8 1022 aa15.42■□□□□ 0.06
COL6A3-214ENST00000493608 PHF8Q9UPP1 1060 aa15.42■□□□□ 0.06
COL6A3-214ENST00000493608 PLEKHG5O94827 1062 aa15.41■□□□□ 0.06
COL6A3-214ENST00000493608 L3MBTL2Q969R5 705 aa15.41■□□□□ 0.06
COL6A3-214ENST00000493608 NGLY1Q96IV0 654 aa15.41■□□□□ 0.06
COL6A3-214ENST00000493608 PHF12Q96QT6 1004 aa15.41■□□□□ 0.06
COL6A3-214ENST00000493608 ARHGEF28Q8N1W1 1705 aaKnown RBP15.39■□□□□ 0.05
COL6A3-214ENST00000493608 USP32Q8NFA0 1604 aa15.39■□□□□ 0.05
COL6A3-214ENST00000493608 KIF1AQ12756 1690 aa15.38■□□□□ 0.05
COL6A3-214ENST00000493608 WASLO00401 505 aaPredicted RBP15.38■□□□□ 0.05
COL6A3-214ENST00000493608 GALR2O43603 387 aaPredicted RBP15.38■□□□□ 0.05
COL6A3-214ENST00000493608 RXRBP28702 533 aa15.38■□□□□ 0.05
COL6A3-214ENST00000493608 PSME1Q06323 249 aa15.38■□□□□ 0.05
COL6A3-214ENST00000493608 QTRT2Q9H974 415 aaKnown RBP15.38■□□□□ 0.05
COL6A3-214ENST00000493608 TRIM26Q12899 539 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-214ENST00000493608 LMOD2Q6P5Q4 547 aa15.37■□□□□ 0.05
COL6A3-214ENST00000493608 SPATA31A3Q5VYP0 1347 aa15.37■□□□□ 0.05
COL6A3-214ENST00000493608 PRR36Q9H6K5 1346 aa15.37■□□□□ 0.05
COL6A3-214ENST00000493608 COL22A1Q8NFW1 1626 aaPredicted RBP15.36■□□□□ 0.05
COL6A3-214ENST00000493608 KIAA1210Q9ULL0 1709 aa15.36■□□□□ 0.05
COL6A3-214ENST00000493608 ADGRB2O60241 1585 aa15.36■□□□□ 0.05
COL6A3-214ENST00000493608 PLCD3Q8N3E9 789 aa15.35■□□□□ 0.05
COL6A3-214ENST00000493608 CABLES1Q8TDN4 633 aa15.35■□□□□ 0.05
COL6A3-214ENST00000493608 CDK19Q9BWU1 502 aa15.34■□□□□ 0.05
COL6A3-214ENST00000493608 USP21Q9UK80 565 aa15.34■□□□□ 0.05
COL6A3-214ENST00000493608 ANKARQ7Z5J8 1434 aa15.34■□□□□ 0.05
COL6A3-214ENST00000493608 NUDT16Q96DE0 195 aaKnown RBP15.33■□□□□ 0.04
COL6A3-214ENST00000493608 NGDNQ8NEJ9 315 aaKnown RBP15.32■□□□□ 0.04
COL6A3-214ENST00000493608 CCDC61Q9Y6R9 512 aa15.32■□□□□ 0.04
COL6A3-214ENST00000493608 TULP4Q9NRJ4 1543 aa15.32■□□□□ 0.04
COL6A3-214ENST00000493608 MARF1Q9Y4F3 1742 aaKnown RBP15.31■□□□□ 0.04
COL6A3-214ENST00000493608 HAP1P54257 671 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-214ENST00000493608 FNBP4Q8N3X1 1017 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-214ENST00000493608 TSPYL2Q9H2G4 693 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-214ENST00000493608 TNS3Q68CZ2 1445 aa15.31■□□□□ 0.04
COL6A3-214ENST00000493608 RBM6P78332 1123 aaKnown RBP15.3■□□□□ 0.04
COL6A3-214ENST00000493608 EIF3AQ14152 1382 aaKnown RBP15.3■□□□□ 0.04
COL6A3-214ENST00000493608 SBNO1A3KN83 1393 aa15.29■□□□□ 0.04
COL6A3-214ENST00000493608 CENPJQ9HC77 1338 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-214ENST00000493608 NBPF8Q3BBV2 869 aa15.29■□□□□ 0.04
COL6A3-214ENST00000493608 RASEFQ8IZ41 740 aa15.29■□□□□ 0.04
COL6A3-214ENST00000493608 GPRASP1Q5JY77 1395 aa15.28■□□□□ 0.04
COL6A3-214ENST00000493608 DCBLD2Q96PD2 775 aa15.28■□□□□ 0.04
COL6A3-214ENST00000493608 TRPC5Q9UL62 973 aaPredicted RBP15.28■□□□□ 0.04
COL6A3-214ENST00000493608 ATP7BP35670 1465 aa15.27■□□□□ 0.04
COL6A3-214ENST00000493608 TRPM3Q9HCF6 1732 aaPredicted RBP15.27■□□□□ 0.04
COL6A3-214ENST00000493608 SRPK2P78362 688 aaKnown RBP15.27■□□□□ 0.04
COL6A3-214ENST00000493608 CABP2Q9NPB3 220 aa15.27■□□□□ 0.04
COL6A3-214ENST00000493608 FBXO3Q9UK99 471 aa15.27■□□□□ 0.04
COL6A3-214ENST00000493608 TRPM1Q7Z4N2 1603 aa15.27■□□□□ 0.03
COL6A3-214ENST00000493608 ITSN1Q15811 1721 aa15.26■□□□□ 0.03
COL6A3-214ENST00000493608 BCL9LQ86UU0 1499 aa15.26■□□□□ 0.03
COL6A3-214ENST00000493608 QRICH2Q9H0J4 1663 aa15.25■□□□□ 0.03
COL6A3-214ENST00000493608 ARHGEF10O15013 1369 aa15.25■□□□□ 0.03
COL6A3-214ENST00000493608 ROCK2O75116 1388 aaKnown RBP15.25■□□□□ 0.03
COL6A3-214ENST00000493608 RGS12O14924 1447 aa15.25■□□□□ 0.03
COL6A3-214ENST00000493608 ACEP12821 1306 aa15.24■□□□□ 0.03
COL6A3-214ENST00000493608 NUBP1P53384 320 aa15.24■□□□□ 0.03
COL6A3-214ENST00000493608 NUTM2GQ5VZR2 741 aa15.24■□□□□ 0.03
COL6A3-214ENST00000493608 ALS2Q96Q42 1657 aa15.24■□□□□ 0.03
COL6A3-214ENST00000493608 ATRNO75882 1429 aa15.24■□□□□ 0.03
COL6A3-214ENST00000493608 ABCA3Q99758 1704 aa15.23■□□□□ 0.03
COL6A3-214ENST00000493608 CDK12Q9NYV4 1490 aaPredicted RBP15.23■□□□□ 0.03
COL6A3-214ENST00000493608 FAM83GA6ND36 823 aa15.23■□□□□ 0.03
COL6A3-214ENST00000493608 UNC5CLQ8IV45 518 aa15.23■□□□□ 0.03
COL6A3-214ENST00000493608 UPF1Q92900 1129 aaKnown RBP eCLIP15.23■□□□□ 0.03
COL6A3-214ENST00000493608 MS4A3Q96HJ5 214 aa15.23■□□□□ 0.03
COL6A3-214ENST00000493608 ZBTB47Q9UFB7 747 aaPredicted RBP15.23■□□□□ 0.03
COL6A3-214ENST00000493608 TONSLQ96HA7 1378 aa15.23■□□□□ 0.03
COL6A3-214ENST00000493608 PLEKHG3A1L390 1219 aa15.22■□□□□ 0.03
COL6A3-214ENST00000493608 GJD4Q96KN9 370 aaPredicted RBP15.22■□□□□ 0.03
COL6A3-214ENST00000493608 TOPAZ1Q8N9V7 1692 aa15.21■□□□□ 0.03
COL6A3-214ENST00000493608 SLIT2O94813 1529 aa15.21■□□□□ 0.03
COL6A3-214ENST00000493608 PPIP5K1Q6PFW1 1433 aa15.2■□□□□ 0.02
COL6A3-214ENST00000493608 KIF12Q96FN5 646 aa15.2■□□□□ 0.02
COL6A3-214ENST00000493608 CABP1Q9NZU7 370 aa15.19■□□□□ 0.02
COL6A3-214ENST00000493608 CCDC9Q9Y3X0 531 aaKnown RBP15.19■□□□□ 0.02
COL6A3-214ENST00000493608 POLR3AO14802 1390 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-214ENST00000493608 PLCH1Q4KWH8 1693 aa15.19■□□□□ 0.02
COL6A3-214ENST00000493608 EVC2Q86UK5 1308 aa15.18■□□□□ 0.02
COL6A3-214ENST00000493608 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.18■□□□□ 0.02
COL6A3-214ENST00000493608 LHX8Q68G74 356 aa15.18■□□□□ 0.02
COL6A3-214ENST00000493608 CARD11Q9BXL7 1154 aa15.18■□□□□ 0.02
COL6A3-214ENST00000493608 ABTB2Q8N961 1025 aa15.17■□□□□ 0.02
COL6A3-214ENST00000493608 BTG4Q9NY30 223 aa15.17■□□□□ 0.02
COL6A3-214ENST00000493608 RALGAPBQ86X10 1494 aa15.16■□□□□ 0.02
COL6A3-214ENST00000493608 ZC3H6P61129 1189 aaKnown RBP15.16■□□□□ 0.02
COL6A3-214ENST00000493608 PCGF6Q9BYE7 350 aa15.16■□□□□ 0.02
COL6A3-214ENST00000493608 CRYBG1Q9Y4K1 1723 aa15.16■□□□□ 0.02
COL6A3-214ENST00000493608 GLI3P10071 1580 aa15.15■□□□□ 0.02
COL6A3-214ENST00000493608 NWD2Q9ULI1 1742 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms