RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 CD163L1Q9NR16 1453 aa27.33■■□□□ 1.97
SHROOM3-209ENST00000490690 XPCQ01831 940 aaPredicted RBP27.33■■□□□ 1.97
SHROOM3-209ENST00000490690 AKAP12Q02952 1782 aa27.31■■□□□ 1.96
SHROOM3-209ENST00000490690 ZNF316A6NFI3 1004 aaPredicted RBP27.31■■□□□ 1.96
SHROOM3-209ENST00000490690 MYOM1P52179 1685 aa27.3■■□□□ 1.96
SHROOM3-209ENST00000490690 TTC21BQ7Z4L5 1316 aa27.3■■□□□ 1.96
SHROOM3-209ENST00000490690 SSH2Q76I76 1423 aa27.3■■□□□ 1.96
SHROOM3-209ENST00000490690 MON2Q7Z3U7 1717 aa27.28■■□□□ 1.96
SHROOM3-209ENST00000490690 ABTB2Q8N961 1025 aa27.28■■□□□ 1.96
SHROOM3-209ENST00000490690 SPATA31A6Q5VVP1 1343 aa27.27■■□□□ 1.96
SHROOM3-209ENST00000490690 LMOD2Q6P5Q4 547 aa27.27■■□□□ 1.96
SHROOM3-209ENST00000490690 PANK3Q9H999 370 aa27.27■■□□□ 1.96
SHROOM3-209ENST00000490690 NLRP13Q86W25 1043 aa27.26■■□□□ 1.95
SHROOM3-209ENST00000490690 TRPM3Q9HCF6 1732 aaPredicted RBP27.26■■□□□ 1.95
SHROOM3-209ENST00000490690 PNPLA6Q8IY17 1366 aa27.25■■□□□ 1.95
SHROOM3-209ENST00000490690 CGNL1Q0VF96 1302 aa27.25■■□□□ 1.95
SHROOM3-209ENST00000490690 KNSTRNQ9Y448 316 aa27.25■■□□□ 1.95
SHROOM3-209ENST00000490690 NSD3Q9BZ95 1437 aa27.24■■□□□ 1.95
SHROOM3-209ENST00000490690 ILDR1Q86SU0 546 aaPredicted RBP27.23■■□□□ 1.95
SHROOM3-209ENST00000490690 NRKQ7Z2Y5 1582 aa27.22■■□□□ 1.95
SHROOM3-209ENST00000490690 SHPRHQ149N8 1683 aa27.22■■□□□ 1.95
SHROOM3-209ENST00000490690 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.21■■□□□ 1.95
SHROOM3-209ENST00000490690 NSD2O96028 1365 aa27.21■■□□□ 1.95
SHROOM3-209ENST00000490690 NLRP6P59044 892 aa27.2■■□□□ 1.94
SHROOM3-209ENST00000490690 ALS2Q96Q42 1657 aa27.2■■□□□ 1.94
SHROOM3-209ENST00000490690 USP31Q70CQ4 1352 aa27.2■■□□□ 1.94
SHROOM3-209ENST00000490690 HAP1P54257 671 aaPredicted RBP27.19■■□□□ 1.94
SHROOM3-209ENST00000490690 COL22A1Q8NFW1 1626 aaPredicted RBP27.19■■□□□ 1.94
SHROOM3-209ENST00000490690 MED1Q15648 1581 aaPredicted RBP27.18■■□□□ 1.94
SHROOM3-209ENST00000490690 CARD14Q9BXL6 1004 aa27.18■■□□□ 1.94
SHROOM3-209ENST00000490690 KCNH5Q8NCM2 988 aa27.17■■□□□ 1.94
SHROOM3-209ENST00000490690 COG3Q96JB2 828 aa27.17■■□□□ 1.94
SHROOM3-209ENST00000490690 USP19O94966 1318 aa27.15■■□□□ 1.94
SHROOM3-209ENST00000490690 FYB1O15117 783 aa27.13■■□□□ 1.93
SHROOM3-209ENST00000490690 NME9Q86XW9 330 aa27.13■■□□□ 1.93
SHROOM3-209ENST00000490690 NPC1L1Q9UHC9 1359 aa27.12■■□□□ 1.93
SHROOM3-209ENST00000490690 PIK3C2AO00443 1686 aa27.11■■□□□ 1.93
SHROOM3-209ENST00000490690 OVOS2A0A0J9YW53 1432 aa27.1■■□□□ 1.93
SHROOM3-209ENST00000490690 OVOS2Q6IE36 1432 aa27.1■■□□□ 1.93
SHROOM3-209ENST00000490690 PER1O15534 1290 aaPredicted RBP27.1■■□□□ 1.93
SHROOM3-209ENST00000490690 USP54Q70EL1 1684 aa27.09■■□□□ 1.93
SHROOM3-209ENST00000490690 NUTM2GQ5VZR2 741 aa27.09■■□□□ 1.93
SHROOM3-209ENST00000490690 DDX10Q13206 875 aaKnown RBP27.08■■□□□ 1.93
SHROOM3-209ENST00000490690 SLIT3O75094 1523 aa27.07■■□□□ 1.92
SHROOM3-209ENST00000490690 GCP02774 474 aa27.07■■□□□ 1.92
SHROOM3-209ENST00000490690 GGNBP2Q9H3C7 697 aa27.06■■□□□ 1.92
SHROOM3-209ENST00000490690 NUTM2BA6NNL0 878 aaPredicted RBP27.05■■□□□ 1.92
SHROOM3-209ENST00000490690 NUTM2EB1AL46 878 aaPredicted RBP27.05■■□□□ 1.92
SHROOM3-209ENST00000490690 AMER1Q5JTC6 1135 aaPredicted RBP27.05■■□□□ 1.92
SHROOM3-209ENST00000490690 MEX3CQ5U5Q3 659 aaKnown RBP27.05■■□□□ 1.92
SHROOM3-209ENST00000490690 NUTM2AQ8IVF1 878 aaPredicted RBP27.05■■□□□ 1.92
SHROOM3-209ENST00000490690 KIF20BQ96Q89 1820 aa27.04■■□□□ 1.92
SHROOM3-209ENST00000490690 CPDO75976 1380 aa27.03■■□□□ 1.92
SHROOM3-209ENST00000490690 CABLES1Q8TDN4 633 aa27.03■■□□□ 1.92
SHROOM3-209ENST00000490690 MORC1Q86VD1 984 aa27.01■■□□□ 1.91
SHROOM3-209ENST00000490690 PRDM11Q9NQV5 511 aa27■■□□□ 1.91
SHROOM3-209ENST00000490690 PHRF1Q9P1Y6 1649 aaKnown RBP27■■□□□ 1.91
SHROOM3-209ENST00000490690 AATKQ6ZMQ8 1374 aa26.98■■□□□ 1.91
SHROOM3-209ENST00000490690 PLEKHG5O94827 1062 aa26.98■■□□□ 1.91
SHROOM3-209ENST00000490690 ADAMTS2O95450 1211 aa26.98■■□□□ 1.91
SHROOM3-209ENST00000490690 ZRANB1Q9UGI0 708 aa26.98■■□□□ 1.91
SHROOM3-209ENST00000490690 ABCA3Q99758 1704 aa26.98■■□□□ 1.91
SHROOM3-209ENST00000490690 CRYBG1Q9Y4K1 1723 aa26.98■■□□□ 1.91
SHROOM3-209ENST00000490690 KIF24Q5T7B8 1368 aa26.97■■□□□ 1.91
SHROOM3-209ENST00000490690 ANKRD26Q9UPS8 1709 aa26.96■■□□□ 1.91
SHROOM3-209ENST00000490690 ABCC6O95255 1503 aa26.95■■□□□ 1.91
SHROOM3-209ENST00000490690 LRP6O75581 1613 aa26.95■■□□□ 1.91
SHROOM3-209ENST00000490690 CC2D1BQ5T0F9 858 aaKnown RBP26.95■■□□□ 1.9
SHROOM3-209ENST00000490690 ARHGEF25Q86VW2 580 aa26.95■■□□□ 1.9
SHROOM3-209ENST00000490690 KIAA0232Q92628 1395 aa26.95■■□□□ 1.9
SHROOM3-209ENST00000490690 ZC3H6P61129 1189 aaKnown RBP26.94■■□□□ 1.9
SHROOM3-209ENST00000490690 NGLY1Q96IV0 654 aa26.94■■□□□ 1.9
SHROOM3-209ENST00000490690 NFAT5O94916 1531 aa26.94■■□□□ 1.9
SHROOM3-209ENST00000490690 SOX12O15370 315 aa26.93■■□□□ 1.9
SHROOM3-209ENST00000490690 RTL1A6NKG5 1358 aa26.93■■□□□ 1.9
SHROOM3-209ENST00000490690 C8orf37Q96NL8 207 aa26.92■■□□□ 1.9
SHROOM3-209ENST00000490690 MARF1Q9Y4F3 1742 aaKnown RBP26.92■■□□□ 1.9
SHROOM3-209ENST00000490690 RALBP1Q15311 655 aa26.91■■□□□ 1.9
SHROOM3-209ENST00000490690 COL14A1Q05707 1796 aaKnown RBP26.89■■□□□ 1.9
SHROOM3-209ENST00000490690 AMPHP49418 695 aa26.89■■□□□ 1.9
SHROOM3-209ENST00000490690 FNBP4Q8N3X1 1017 aaPredicted RBP26.89■■□□□ 1.9
SHROOM3-209ENST00000490690 ZNF772Q68DY9 489 aaPredicted RBP26.88■■□□□ 1.89
SHROOM3-209ENST00000490690 PHF23Q9BUL5 403 aaPredicted RBP26.88■■□□□ 1.89
SHROOM3-209ENST00000490690 FAM83GA6ND36 823 aa26.87■■□□□ 1.89
SHROOM3-209ENST00000490690 BLMP54132 1417 aaPredicted RBP26.87■■□□□ 1.89
SHROOM3-209ENST00000490690 MAP3K19Q56UN5 1328 aa26.87■■□□□ 1.89
SHROOM3-209ENST00000490690 FLT4P35916 1363 aa26.86■■□□□ 1.89
SHROOM3-209ENST00000490690 ZBTB7CA1YPR0 619 aa26.86■■□□□ 1.89
SHROOM3-209ENST00000490690 SLIT2O94813 1529 aa26.85■■□□□ 1.89
SHROOM3-209ENST00000490690 IP6K1Q92551 441 aa26.85■■□□□ 1.89
SHROOM3-209ENST00000490690 TNNT2P45379 298 aaPredicted RBP26.84■■□□□ 1.89
SHROOM3-209ENST00000490690 PARD3Q8TEW0 1356 aa26.84■■□□□ 1.89
SHROOM3-209ENST00000490690 UNC5CLQ8IV45 518 aa26.83■■□□□ 1.89
SHROOM3-209ENST00000490690 BTG4Q9NY30 223 aa26.83■■□□□ 1.89
SHROOM3-209ENST00000490690 USP21Q9UK80 565 aa26.83■■□□□ 1.89
SHROOM3-209ENST00000490690 AFF2P51816 1311 aa26.83■■□□□ 1.89
SHROOM3-209ENST00000490690 RRS1Q15050 365 aaKnown RBP26.82■■□□□ 1.88
SHROOM3-209ENST00000490690 CHRNA2Q15822 529 aa26.82■■□□□ 1.88
SHROOM3-209ENST00000490690 POLKQ9UBT6 870 aa26.82■■□□□ 1.88
SHROOM3-209ENST00000490690 NWD2Q9ULI1 1742 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms