RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 CABLES1Q8TDN4 633 aa24.38■■□□□ 1.49
MDC1-206ENST00000489540 TOPAZ1Q8N9V7 1692 aa24.38■■□□□ 1.49
MDC1-206ENST00000489540 FNBP4Q8N3X1 1017 aaPredicted RBP24.36■■□□□ 1.49
MDC1-206ENST00000489540 PLEKHG5O94827 1062 aa24.35■■□□□ 1.49
MDC1-206ENST00000489540 TMF1P82094 1093 aa24.34■■□□□ 1.49
MDC1-206ENST00000489540 ABTB2Q8N961 1025 aa24.34■■□□□ 1.49
MDC1-206ENST00000489540 TRPM3Q9HCF6 1732 aaPredicted RBP24.33■■□□□ 1.49
MDC1-206ENST00000489540 TMC1Q8TDI8 760 aa24.32■■□□□ 1.48
MDC1-206ENST00000489540 USP21Q9UK80 565 aa24.32■■□□□ 1.48
MDC1-206ENST00000489540 USP6P35125 1406 aa24.31■■□□□ 1.48
MDC1-206ENST00000489540 QTRT2Q9H974 415 aaKnown RBP24.31■■□□□ 1.48
MDC1-206ENST00000489540 CDCA8Q53HL2 280 aa24.3■■□□□ 1.48
MDC1-206ENST00000489540 RXRBP28702 533 aa24.29■■□□□ 1.48
MDC1-206ENST00000489540 NLRP13Q86W25 1043 aa24.29■■□□□ 1.48
MDC1-206ENST00000489540 SLC12A5Q9H2X9 1139 aa24.29■■□□□ 1.48
MDC1-206ENST00000489540 NUTM2GQ5VZR2 741 aa24.28■■□□□ 1.48
MDC1-206ENST00000489540 CPSF1Q10570 1443 aaKnown RBP24.28■■□□□ 1.48
MDC1-206ENST00000489540 ALS2Q96Q42 1657 aa24.28■■□□□ 1.48
MDC1-206ENST00000489540 EIF4G2P78344 907 aaKnown RBP eCLIP24.27■■□□□ 1.48
MDC1-206ENST00000489540 HDGFL2Q7Z4V5 671 aaPredicted RBP24.27■■□□□ 1.48
MDC1-206ENST00000489540 TRPC5Q9UL62 973 aaPredicted RBP24.27■■□□□ 1.48
MDC1-206ENST00000489540 TERF2IPQ9NYB0 399 aa24.27■■□□□ 1.48
MDC1-206ENST00000489540 SSH2Q76I76 1423 aa24.26■■□□□ 1.47
MDC1-206ENST00000489540 KTN1Q86UP2 1357 aaKnown RBP24.26■■□□□ 1.47
MDC1-206ENST00000489540 NINLQ9Y2I6 1382 aa24.26■■□□□ 1.47
MDC1-206ENST00000489540 FAM83GA6ND36 823 aa24.26■■□□□ 1.47
MDC1-206ENST00000489540 TTC21BQ7Z4L5 1316 aa24.25■■□□□ 1.47
MDC1-206ENST00000489540 SOCS7O14512 581 aa24.25■■□□□ 1.47
MDC1-206ENST00000489540 NLRP6P59044 892 aa24.24■■□□□ 1.47
MDC1-206ENST00000489540 RBM6P78332 1123 aaKnown RBP24.24■■□□□ 1.47
MDC1-206ENST00000489540 UNC5CLQ8IV45 518 aa24.24■■□□□ 1.47
MDC1-206ENST00000489540 TTC21AQ8NDW8 1320 aa24.24■■□□□ 1.47
MDC1-206ENST00000489540 BCL9LQ86UU0 1499 aa24.22■■□□□ 1.47
MDC1-206ENST00000489540 USP19O94966 1318 aa24.21■■□□□ 1.47
MDC1-206ENST00000489540 SLIT2O94813 1529 aa24.21■■□□□ 1.47
MDC1-206ENST00000489540 GCP02774 474 aa24.2■■□□□ 1.46
MDC1-206ENST00000489540 HSPA5P11021 654 aaKnown RBP24.2■■□□□ 1.46
MDC1-206ENST00000489540 PRDM11Q9NQV5 511 aa24.2■■□□□ 1.46
MDC1-206ENST00000489540 ATRNO75882 1429 aa24.18■■□□□ 1.46
MDC1-206ENST00000489540 ZC3H6P61129 1189 aaKnown RBP24.18■■□□□ 1.46
MDC1-206ENST00000489540 CD163L1Q9NR16 1453 aa24.18■■□□□ 1.46
MDC1-206ENST00000489540 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.17■■□□□ 1.46
MDC1-206ENST00000489540 A0A1W2PP64 1363 aa24.16■■□□□ 1.46
MDC1-206ENST00000489540 KIAA0232Q92628 1395 aa24.16■■□□□ 1.46
MDC1-206ENST00000489540 MARF1Q9Y4F3 1742 aaKnown RBP24.16■■□□□ 1.46
MDC1-206ENST00000489540 GJD4Q96KN9 370 aaPredicted RBP24.16■■□□□ 1.46
MDC1-206ENST00000489540 BTG4Q9NY30 223 aa24.16■■□□□ 1.46
MDC1-206ENST00000489540 VPS72Q15906 364 aa24.15■■□□□ 1.46
MDC1-206ENST00000489540 KCNH5Q8NCM2 988 aa24.14■■□□□ 1.45
MDC1-206ENST00000489540 ABCA3Q99758 1704 aa24.14■■□□□ 1.45
MDC1-206ENST00000489540 CDK12Q9NYV4 1490 aaPredicted RBP24.14■■□□□ 1.45
MDC1-206ENST00000489540 EDC4Q6P2E9 1401 aaKnown RBP24.14■■□□□ 1.45
MDC1-206ENST00000489540 CPDO75976 1380 aa24.14■■□□□ 1.45
MDC1-206ENST00000489540 CHRNA2Q15822 529 aa24.12■■□□□ 1.45
MDC1-206ENST00000489540 ANKRD36BQ8N2N9 1353 aa24.12■■□□□ 1.45
MDC1-206ENST00000489540 AKAP12Q02952 1782 aa24.11■■□□□ 1.45
MDC1-206ENST00000489540 USP31Q70CQ4 1352 aa24.11■■□□□ 1.45
MDC1-206ENST00000489540 NME9Q86XW9 330 aa24.1■■□□□ 1.45
MDC1-206ENST00000489540 CRYBG1Q9Y4K1 1723 aa24.1■■□□□ 1.45
MDC1-206ENST00000489540 CCDC9Q9Y3X0 531 aaKnown RBP24.1■■□□□ 1.45
MDC1-206ENST00000489540 ZRANB1Q9UGI0 708 aa24.08■■□□□ 1.44
MDC1-206ENST00000489540 COL14A1Q05707 1796 aaKnown RBP24.08■■□□□ 1.44
MDC1-206ENST00000489540 PHRF1Q9P1Y6 1649 aaKnown RBP24.07■■□□□ 1.44
MDC1-206ENST00000489540 EVA1CP58658 441 aa24.07■■□□□ 1.44
MDC1-206ENST00000489540 SLIT3O75094 1523 aa24.07■■□□□ 1.44
MDC1-206ENST00000489540 PIK3C2AO00443 1686 aa24.06■■□□□ 1.44
MDC1-206ENST00000489540 MON2Q7Z3U7 1717 aa24.06■■□□□ 1.44
MDC1-206ENST00000489540 NRKQ7Z2Y5 1582 aa24.05■■□□□ 1.44
MDC1-206ENST00000489540 NWD2Q9ULI1 1742 aa24.05■■□□□ 1.44
MDC1-206ENST00000489540 POLR3GLQ9BT43 218 aa24.05■■□□□ 1.44
MDC1-206ENST00000489540 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.05■■□□□ 1.44
MDC1-206ENST00000489540 SOX12O15370 315 aa24.04■■□□□ 1.44
MDC1-206ENST00000489540 ARHGEF25Q86VW2 580 aa24.04■■□□□ 1.44
MDC1-206ENST00000489540 RGS12O14924 1447 aa24.04■■□□□ 1.44
MDC1-206ENST00000489540 AATKQ6ZMQ8 1374 aa24.04■■□□□ 1.44
MDC1-206ENST00000489540 ZBTB7CA1YPR0 619 aa24.03■■□□□ 1.44
MDC1-206ENST00000489540 STRN4Q9NRL3 753 aa24.03■■□□□ 1.44
MDC1-206ENST00000489540 ONECUT3O60422 494 aaPredicted RBP24.02■■□□□ 1.44
MDC1-206ENST00000489540 COG3Q96JB2 828 aa24.02■■□□□ 1.44
MDC1-206ENST00000489540 PLCH1Q4KWH8 1693 aa24.02■■□□□ 1.44
MDC1-206ENST00000489540 SPATA31A5Q5VU36 1347 aa24.01■■□□□ 1.43
MDC1-206ENST00000489540 SPATA31A7Q8IWB4 1347 aa24.01■■□□□ 1.43
MDC1-206ENST00000489540 CARD14Q9BXL6 1004 aa24.01■■□□□ 1.43
MDC1-206ENST00000489540 FYB1O15117 783 aa24■■□□□ 1.43
MDC1-206ENST00000489540 C11orf95C9JLR9 678 aaPredicted RBP23.99■■□□□ 1.43
MDC1-206ENST00000489540 SEPT12Q8IYM1 358 aa23.98■■□□□ 1.43
MDC1-206ENST00000489540 OVOS2A0A0J9YW53 1432 aa23.98■■□□□ 1.43
MDC1-206ENST00000489540 OVOS2Q6IE36 1432 aa23.98■■□□□ 1.43
MDC1-206ENST00000489540 CAMTA1Q9Y6Y1 1673 aa23.97■■□□□ 1.43
MDC1-206ENST00000489540 SPATA31A1Q5TZJ5 1347 aa23.97■■□□□ 1.43
MDC1-206ENST00000489540 FAM98CQ17RN3 349 aaKnown RBP23.96■■□□□ 1.43
MDC1-206ENST00000489540 LARP1Q6PKG0 1096 aaKnown RBP23.96■■□□□ 1.43
MDC1-206ENST00000489540 AXIN2Q9Y2T1 843 aa23.96■■□□□ 1.43
MDC1-206ENST00000489540 GLI3P10071 1580 aa23.96■■□□□ 1.43
MDC1-206ENST00000489540 GGNBP2Q9H3C7 697 aa23.95■■□□□ 1.42
MDC1-206ENST00000489540 NRAPQ86VF7 1730 aa23.95■■□□□ 1.42
MDC1-206ENST00000489540 NFAT5O94916 1531 aa23.95■■□□□ 1.42
MDC1-206ENST00000489540 NSD3Q9BZ95 1437 aa23.93■■□□□ 1.42
MDC1-206ENST00000489540 LMO7Q8WWI1 1683 aa23.93■■□□□ 1.42
MDC1-206ENST00000489540 PANK3Q9H999 370 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms