RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MVPQ14764 893 aaKnown RBP22.96■■□□□ 1.27
VIM-206ENST00000487938 FTSJ3Q8IY81 847 aaKnown RBP22.96■■□□□ 1.27
VIM-206ENST00000487938 RWDD1Q9H446 243 aaPredicted RBP22.96■■□□□ 1.27
VIM-206ENST00000487938 YTHDC2Q9H6S0 1430 aaKnown RBP22.96■■□□□ 1.27
VIM-206ENST00000487938 STAG3Q9UJ98 1225 aa22.96■■□□□ 1.27
VIM-206ENST00000487938 CABP1Q9NZU7 370 aa22.96■■□□□ 1.27
VIM-206ENST00000487938 ATAD2Q6PL18 1390 aa22.95■■□□□ 1.27
VIM-206ENST00000487938 TMEM131LA2VDJ0 1609 aa22.95■■□□□ 1.27
VIM-206ENST00000487938 ADGRB2O60241 1585 aa22.95■■□□□ 1.26
VIM-206ENST00000487938 DZIP1LQ8IYY4 767 aaKnown RBP22.95■■□□□ 1.26
VIM-206ENST00000487938 SMC4Q9NTJ3 1288 aa22.95■■□□□ 1.26
VIM-206ENST00000487938 CD163L1Q9NR16 1453 aa22.94■■□□□ 1.26
VIM-206ENST00000487938 TSPOAP1O95153 1857 aa22.94■■□□□ 1.26
VIM-206ENST00000487938 RIPK4P57078 832 aa22.93■■□□□ 1.26
VIM-206ENST00000487938 HDGFL2Q7Z4V5 671 aaPredicted RBP22.93■■□□□ 1.26
VIM-206ENST00000487938 FBLN1P23142 703 aa22.93■■□□□ 1.26
VIM-206ENST00000487938 DIAPH1O60610 1272 aaKnown RBP22.92■■□□□ 1.26
VIM-206ENST00000487938 SSH1Q8WYL5 1049 aa22.92■■□□□ 1.26
VIM-206ENST00000487938 COL3A1P02461 1466 aaPredicted RBP22.92■■□□□ 1.26
VIM-206ENST00000487938 VIRMAQ69YN4 1812 aaKnown RBP22.91■■□□□ 1.26
VIM-206ENST00000487938 REREQ9P2R6 1566 aa22.91■■□□□ 1.26
VIM-206ENST00000487938 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.91■■□□□ 1.26
VIM-206ENST00000487938 PPP6R1Q9UPN7 881 aa22.91■■□□□ 1.26
VIM-206ENST00000487938 CT47B1P0C2W7 299 aaPredicted RBP22.9■■□□□ 1.26
VIM-206ENST00000487938 TRIM27P14373 513 aa22.9■■□□□ 1.26
VIM-206ENST00000487938 AGLP35573 1532 aa22.9■■□□□ 1.26
VIM-206ENST00000487938 WAPLQ7Z5K2 1190 aa22.89■■□□□ 1.26
VIM-206ENST00000487938 FRAT2O75474 233 aaPredicted RBP22.89■■□□□ 1.25
VIM-206ENST00000487938 NOB1Q9ULX3 412 aaKnown RBP22.89■■□□□ 1.25
VIM-206ENST00000487938 NLRP1Q9C000 1473 aa22.88■■□□□ 1.25
VIM-206ENST00000487938 GSE1Q14687 1217 aa22.88■■□□□ 1.25
VIM-206ENST00000487938 ITPRIPQ8IWB1 547 aa22.87■■□□□ 1.25
VIM-206ENST00000487938 ALKQ9UM73 1620 aa22.87■■□□□ 1.25
VIM-206ENST00000487938 ATF7IPQ6VMQ6 1270 aa22.85■■□□□ 1.25
VIM-206ENST00000487938 MED14O60244 1454 aa22.84■■□□□ 1.25
VIM-206ENST00000487938 IL16Q14005 1332 aa22.83■■□□□ 1.25
VIM-206ENST00000487938 ARHGEF40Q8TER5 1519 aa22.83■■□□□ 1.25
VIM-206ENST00000487938 PNPLA6Q8IY17 1366 aa22.83■■□□□ 1.25
VIM-206ENST00000487938 CLTCQ00610 1675 aaKnown RBP22.83■■□□□ 1.24
VIM-206ENST00000487938 ANKRD26Q9UPS8 1709 aa22.82■■□□□ 1.24
VIM-206ENST00000487938 TMEM57Q8N5G2 664 aa22.82■■□□□ 1.24
VIM-206ENST00000487938 PNNQ9H307 717 aaKnown RBP22.82■■□□□ 1.24
VIM-206ENST00000487938 UPF2Q9HAU5 1272 aaKnown RBP22.82■■□□□ 1.24
VIM-206ENST00000487938 BECN1Q14457 450 aa22.82■■□□□ 1.24
VIM-206ENST00000487938 IL27Q8NEV9 243 aa22.82■■□□□ 1.24
VIM-206ENST00000487938 POLKQ9UBT6 870 aa22.82■■□□□ 1.24
VIM-206ENST00000487938 DDX19BQ9UMR2 479 aa22.82■■□□□ 1.24
VIM-206ENST00000487938 PRKAR2BP31323 418 aa22.81■■□□□ 1.24
VIM-206ENST00000487938 FCHSD2O94868 740 aa22.8■■□□□ 1.24
VIM-206ENST00000487938 MLECQ14165 292 aa22.8■■□□□ 1.24
VIM-206ENST00000487938 SLKQ9H2G2 1235 aaPredicted RBP22.8■■□□□ 1.24
VIM-206ENST00000487938 HMOX1P09601 288 aa22.79■■□□□ 1.24
VIM-206ENST00000487938 TBC1D32Q96NH3 1257 aa22.79■■□□□ 1.24
VIM-206ENST00000487938 RSPH6AQ9H0K4 717 aa22.78■■□□□ 1.24
VIM-206ENST00000487938 HDAC1Q13547 482 aaPredicted RBP22.78■■□□□ 1.24
VIM-206ENST00000487938 PHACTR3Q96KR7 559 aa22.78■■□□□ 1.24
VIM-206ENST00000487938 ZMYM3Q14202 1370 aa22.76■■□□□ 1.23
VIM-206ENST00000487938 SPATA31D1Q6ZQQ2 1576 aa22.76■■□□□ 1.23
VIM-206ENST00000487938 THUMPD2Q9BTF0 503 aaKnown RBP22.76■■□□□ 1.23
VIM-206ENST00000487938 KIF20BQ96Q89 1820 aa22.76■■□□□ 1.23
VIM-206ENST00000487938 IPO8O15397 1037 aaKnown RBP22.75■■□□□ 1.23
VIM-206ENST00000487938 ZBTB40Q9NUA8 1239 aa22.75■■□□□ 1.23
VIM-206ENST00000487938 A2ML1A8K2U0 1454 aa22.75■■□□□ 1.23
VIM-206ENST00000487938 ZRANB1Q9UGI0 708 aa22.75■■□□□ 1.23
VIM-206ENST00000487938 EMILIN1Q9Y6C2 1016 aa22.75■■□□□ 1.23
VIM-206ENST00000487938 KIF16BQ96L93 1317 aa22.74■■□□□ 1.23
VIM-206ENST00000487938 LRRC7Q96NW7 1537 aa22.73■■□□□ 1.23
VIM-206ENST00000487938 NME9Q86XW9 330 aa22.73■■□□□ 1.23
VIM-206ENST00000487938 RIMS2Q9UQ26 1411 aa22.73■■□□□ 1.23
VIM-206ENST00000487938 TBC1D2Q9BYX2 928 aa22.73■■□□□ 1.23
VIM-206ENST00000487938 ALDH1L2Q3SY69 923 aa22.72■■□□□ 1.23
VIM-206ENST00000487938 RTN4Q9NQC3 1192 aaKnown RBP22.72■■□□□ 1.23
VIM-206ENST00000487938 MFAP1P55081 439 aaKnown RBP22.71■■□□□ 1.23
VIM-206ENST00000487938 SMC5Q8IY18 1101 aa22.71■■□□□ 1.23
VIM-206ENST00000487938 FAM135BQ49AJ0 1406 aa22.71■■□□□ 1.23
VIM-206ENST00000487938 NCKAP5LQ9HCH0 1330 aa22.71■■□□□ 1.23
VIM-206ENST00000487938 NFE2L2Q16236 605 aa22.71■■□□□ 1.23
VIM-206ENST00000487938 TXNDC2Q86VQ3 553 aa22.71■■□□□ 1.23
VIM-206ENST00000487938 SPRYD3Q8NCJ5 442 aa22.7■■□□□ 1.22
VIM-206ENST00000487938 WASLO00401 505 aaPredicted RBP22.7■■□□□ 1.22
VIM-206ENST00000487938 ELL2O00472 640 aaPredicted RBP22.7■■□□□ 1.22
VIM-206ENST00000487938 KIF13AQ9H1H9 1805 aa22.7■■□□□ 1.22
VIM-206ENST00000487938 MAP2P11137 1827 aaKnown RBP22.69■■□□□ 1.22
VIM-206ENST00000487938 ESF1Q9H501 851 aaKnown RBP22.69■■□□□ 1.22
VIM-206ENST00000487938 TSPYL6Q8N831 410 aa22.69■■□□□ 1.22
VIM-206ENST00000487938 BRPF3Q9ULD4 1205 aa22.69■■□□□ 1.22
VIM-206ENST00000487938 C22orf23Q9BZE7 217 aa22.68■■□□□ 1.22
VIM-206ENST00000487938 ATP7BP35670 1465 aa22.68■■□□□ 1.22
VIM-206ENST00000487938 VAMP4O75379 141 aa22.68■■□□□ 1.22
VIM-206ENST00000487938 IL13P35225 146 aa22.68■■□□□ 1.22
VIM-206ENST00000487938 ANTXR1Q9H6X2 564 aa22.68■■□□□ 1.22
VIM-206ENST00000487938 PPIP5K1Q6PFW1 1433 aa22.67■■□□□ 1.22
VIM-206ENST00000487938 DLC1Q96QB1 1528 aa22.66■■□□□ 1.22
VIM-206ENST00000487938 RRS1Q15050 365 aaKnown RBP22.66■■□□□ 1.22
VIM-206ENST00000487938 LNPKQ9C0E8 428 aa22.66■■□□□ 1.22
VIM-206ENST00000487938 METP08581 1390 aa22.66■■□□□ 1.22
VIM-206ENST00000487938 CDC42BPGQ6DT37 1551 aa22.66■■□□□ 1.22
VIM-206ENST00000487938 NUDT16Q96DE0 195 aaKnown RBP22.65■■□□□ 1.22
VIM-206ENST00000487938 MRPL50Q8N5N7 158 aaKnown RBP22.65■■□□□ 1.22
VIM-206ENST00000487938 NUCB1Q02818 461 aa22.64■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms