RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 XPCQ01831 940 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-228ENST00000486227 WASLO00401 505 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-228ENST00000486227 CHMP5Q9NZZ3 219 aa13.51□□□□□ -0.25
HDAC6-228ENST00000486227 SAMD9Q5K651 1589 aa13.51□□□□□ -0.25
HDAC6-228ENST00000486227 PLEKHO1Q53GL0 409 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-228ENST00000486227 FOXD4L5Q5VV16 416 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-228ENST00000486227 ATF7IPQ6VMQ6 1270 aa13.51□□□□□ -0.25
HDAC6-228ENST00000486227 FOXD4L4Q8WXT5 416 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-228ENST00000486227 SLC4A2P04920 1241 aa13.5□□□□□ -0.25
HDAC6-228ENST00000486227 CCDC30Q5VVM6 783 aa13.5□□□□□ -0.25
HDAC6-228ENST00000486227 PPP6R1Q9UPN7 881 aa13.5□□□□□ -0.25
HDAC6-228ENST00000486227 AMOTL2Q9Y2J4 779 aa13.5□□□□□ -0.25
HDAC6-228ENST00000486227 NFE2L2Q16236 605 aa13.5□□□□□ -0.25
HDAC6-228ENST00000486227 EMILIN1Q9Y6C2 1016 aa13.5□□□□□ -0.25
HDAC6-228ENST00000486227 PZPP20742 1482 aa13.5□□□□□ -0.25
HDAC6-228ENST00000486227 CT47B1P0C2W7 299 aaPredicted RBP13.49□□□□□ -0.25
HDAC6-228ENST00000486227 UBTFL1P0CB47 393 aaPredicted RBP13.49□□□□□ -0.25
HDAC6-228ENST00000486227 PRDM11Q9NQV5 511 aa13.49□□□□□ -0.25
HDAC6-228ENST00000486227 DIAPH3Q9NSV4 1193 aa13.49□□□□□ -0.25
HDAC6-228ENST00000486227 REC8O95072 547 aa13.49□□□□□ -0.25
HDAC6-228ENST00000486227 IFIT2P09913 472 aaKnown RBP13.49□□□□□ -0.25
HDAC6-228ENST00000486227 KIAA2012Q0VF49 1180 aa13.49□□□□□ -0.25
HDAC6-228ENST00000486227 RBM33Q96EV2 1170 aaKnown RBP13.49□□□□□ -0.25
HDAC6-228ENST00000486227 TESK2Q96S53 571 aa13.49□□□□□ -0.25
HDAC6-228ENST00000486227 DMRT2Q9Y5R5 561 aa13.49□□□□□ -0.25
HDAC6-228ENST00000486227 ZNF518AQ6AHZ1 1483 aa13.49□□□□□ -0.25
HDAC6-228ENST00000486227 RIC3Q7Z5B4 369 aa13.49□□□□□ -0.25
HDAC6-228ENST00000486227 HSP90B1P14625 803 aaKnown RBP13.48□□□□□ -0.25
HDAC6-228ENST00000486227 C20orf194Q5TEA3 1177 aa13.48□□□□□ -0.25
HDAC6-228ENST00000486227 TARBP1Q13395 1621 aaKnown RBP13.48□□□□□ -0.25
HDAC6-228ENST00000486227 SHANK2Q9UPX8 1470 aa13.48□□□□□ -0.25
HDAC6-228ENST00000486227 MAGI3Q5TCQ9 1506 aa13.48□□□□□ -0.25
HDAC6-228ENST00000486227 G3BP1Q13283 466 aaKnown RBP eCLIP13.48□□□□□ -0.25
HDAC6-228ENST00000486227 GNL2Q13823 731 aaKnown RBP13.48□□□□□ -0.25
HDAC6-228ENST00000486227 ABCC2Q92887 1545 aa13.48□□□□□ -0.25
HDAC6-228ENST00000486227 PKNOX2Q96KN3 472 aa13.48□□□□□ -0.25
HDAC6-228ENST00000486227 C22orf23Q9BZE7 217 aa13.48□□□□□ -0.25
HDAC6-228ENST00000486227 MRE11P49959 708 aa13.47□□□□□ -0.25
HDAC6-228ENST00000486227 MVPQ14764 893 aaKnown RBP13.47□□□□□ -0.25
HDAC6-228ENST00000486227 ZNF530Q6P9A1 599 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-228ENST00000486227 SF3B2Q13435 895 aaKnown RBP13.47□□□□□ -0.25
HDAC6-228ENST00000486227 AMER1Q5JTC6 1135 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-228ENST00000486227 HDGFL1Q5TGJ6 251 aa13.47□□□□□ -0.25
HDAC6-228ENST00000486227 ANO2Q9NQ90 1003 aa13.47□□□□□ -0.25
HDAC6-228ENST00000486227 TATP17735 454 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-228ENST00000486227 TOM1L2Q6ZVM7 507 aa13.47□□□□□ -0.25
HDAC6-228ENST00000486227 DNMT1P26358 1616 aaKnown RBP13.47□□□□□ -0.25
HDAC6-228ENST00000486227 GNAI3P08754 354 aa13.47□□□□□ -0.25
HDAC6-228ENST00000486227 DCTN1Q14203 1278 aa13.46□□□□□ -0.25
HDAC6-228ENST00000486227 KLHL34Q8N239 644 aa13.46□□□□□ -0.25
HDAC6-228ENST00000486227 CEP170Q5SW79 1584 aa13.46□□□□□ -0.26
HDAC6-228ENST00000486227 FBLN1P23142 703 aa13.45□□□□□ -0.26
HDAC6-228ENST00000486227 INTS3Q68E01 1043 aaKnown RBP13.45□□□□□ -0.26
HDAC6-228ENST00000486227 SYAP1Q96A49 352 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-228ENST00000486227 DUSP27Q5VZP5 1158 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 ARID3AQ99856 593 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 ABCC10Q5T3U5 1492 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 SURF6O75683 361 aaKnown RBP13.44□□□□□ -0.26
HDAC6-228ENST00000486227 RARSP54136 660 aaKnown RBP13.44□□□□□ -0.26
HDAC6-228ENST00000486227 ZC3H6P61129 1189 aaKnown RBP13.44□□□□□ -0.26
HDAC6-228ENST00000486227 HSP90AB4PQ58FF6 505 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 MCM10Q7L590 875 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 RUFY2Q8WXA3 655 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 TOMM22Q9NS69 142 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 MIS18AQ9NYP9 233 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 TEX14Q8IWB6 1497 aa13.44□□□□□ -0.26
HDAC6-228ENST00000486227 FOXD4L6Q3SYB3 417 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-228ENST00000486227 FOXD4L3Q6VB84 417 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-228ENST00000486227 SSH1Q8WYL5 1049 aa13.43□□□□□ -0.26
HDAC6-228ENST00000486227 DDX49Q9Y6V7 483 aaKnown RBP13.43□□□□□ -0.26
HDAC6-228ENST00000486227 NINLQ9Y2I6 1382 aa13.42□□□□□ -0.26
HDAC6-228ENST00000486227 CDC45O75419 566 aa13.42□□□□□ -0.26
HDAC6-228ENST00000486227 TMEM57Q8N5G2 664 aa13.42□□□□□ -0.26
HDAC6-228ENST00000486227 ADGRL2O95490 1459 aa13.42□□□□□ -0.26
HDAC6-228ENST00000486227 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.42□□□□□ -0.26
HDAC6-228ENST00000486227 SKAP1Q86WV1 359 aa13.42□□□□□ -0.26
HDAC6-228ENST00000486227 GNAI2P04899 355 aa13.41□□□□□ -0.26
HDAC6-228ENST00000486227 UBE2Q2Q8WVN8 375 aa13.41□□□□□ -0.26
HDAC6-228ENST00000486227 GCC1Q96CN9 775 aa13.41□□□□□ -0.26
HDAC6-228ENST00000486227 FOXO3O43524 673 aa13.41□□□□□ -0.26
HDAC6-228ENST00000486227 ZNF428Q96B54 188 aa13.41□□□□□ -0.26
HDAC6-228ENST00000486227 TNRQ92752 1358 aa13.41□□□□□ -0.26
HDAC6-228ENST00000486227 DCAF8L1A6NGE4 600 aa13.41□□□□□ -0.26
HDAC6-228ENST00000486227 LRRFIP1Q32MZ4 808 aaKnown RBP13.41□□□□□ -0.26
HDAC6-228ENST00000486227 RBM42Q9BTD8 480 aaKnown RBP13.41□□□□□ -0.26
HDAC6-228ENST00000486227 PHF8Q9UPP1 1060 aa13.41□□□□□ -0.26
HDAC6-228ENST00000486227 FYB1O15117 783 aa13.4□□□□□ -0.26
HDAC6-228ENST00000486227 ZKSCAN1P17029 563 aaPredicted RBP13.4□□□□□ -0.26
HDAC6-228ENST00000486227 VPS37DQ86XT2 251 aa13.4□□□□□ -0.26
HDAC6-228ENST00000486227 NOL10Q9BSC4 688 aaKnown RBP13.4□□□□□ -0.26
HDAC6-228ENST00000486227 HTATSF1O43719 755 aaKnown RBP13.4□□□□□ -0.26
HDAC6-228ENST00000486227 DDX54Q8TDD1 881 aaKnown RBP13.4□□□□□ -0.26
HDAC6-228ENST00000486227 TPM2P07951 284 aa13.39□□□□□ -0.27
HDAC6-228ENST00000486227 ERC2O15083 957 aa13.39□□□□□ -0.27
HDAC6-228ENST00000486227 TRAK2O60296 914 aa13.39□□□□□ -0.27
HDAC6-228ENST00000486227 CCT4P50991 539 aaKnown RBP13.39□□□□□ -0.27
HDAC6-228ENST00000486227 CLASRPQ8N2M8 674 aaKnown RBP13.39□□□□□ -0.27
HDAC6-228ENST00000486227 NSD2O96028 1365 aa13.39□□□□□ -0.27
HDAC6-228ENST00000486227 PARD3Q8TEW0 1356 aa13.39□□□□□ -0.27
HDAC6-228ENST00000486227 NKTRP30414 1462 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms