RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 GJA5P36382 358 aa8.77□□□□□ -1.01
VPS13A-211ENST00000484581 KCNH2Q12809 1159 aa8.77□□□□□ -1.01
VPS13A-211ENST00000484581 DESI1Q6ICB0 168 aa8.77□□□□□ -1.01
VPS13A-211ENST00000484581 HOMEZQ8IX15 550 aa8.77□□□□□ -1.01
VPS13A-211ENST00000484581 SIAH2O43255 324 aa8.76□□□□□ -1.01
VPS13A-211ENST00000484581 PARP9Q8IXQ6 854 aa8.76□□□□□ -1.01
VPS13A-211ENST00000484581 BAP1Q92560 729 aa8.76□□□□□ -1.01
VPS13A-211ENST00000484581 KIFC2Q96AC6 838 aa8.76□□□□□ -1.01
VPS13A-211ENST00000484581 RSBN1LQ6PCB5 846 aaPredicted RBP8.75□□□□□ -1.01
VPS13A-211ENST00000484581 LOC100996750A0A140TA64 210 aa8.74□□□□□ -1.01
VPS13A-211ENST00000484581 FAM181BA6NEQ2 426 aa8.74□□□□□ -1.01
VPS13A-211ENST00000484581 CTHP32929 405 aa8.74□□□□□ -1.01
VPS13A-211ENST00000484581 LINC01559Q495D7 138 aa8.74□□□□□ -1.01
VPS13A-211ENST00000484581 KRTAP4-6Q9BYQ5 205 aa8.74□□□□□ -1.01
VPS13A-211ENST00000484581 PLEKHG3A1L390 1219 aa8.73□□□□□ -1.01
VPS13A-211ENST00000484581 SPTLC1O15269 473 aa8.73□□□□□ -1.01
VPS13A-211ENST00000484581 ZBTB3Q9H5J0 574 aa8.73□□□□□ -1.01
VPS13A-211ENST00000484581 PCDHB15Q9Y5E8 787 aa8.73□□□□□ -1.01
VPS13A-211ENST00000484581 CAPN5O15484 640 aaPredicted RBP8.72□□□□□ -1.01
VPS13A-211ENST00000484581 LYPD8Q6UX82 237 aa8.72□□□□□ -1.01
VPS13A-211ENST00000484581 RIC3Q7Z5B4 369 aa8.72□□□□□ -1.01
VPS13A-211ENST00000484581 ZNF511Q8NB15 262 aa8.72□□□□□ -1.01
VPS13A-211ENST00000484581 VARSP26640 1264 aaKnown RBP8.71□□□□□ -1.02
VPS13A-211ENST00000484581 SLC16A10Q8TF71 515 aa8.71□□□□□ -1.02
VPS13A-211ENST00000484581 HRCP23327 699 aa8.7□□□□□ -1.02
VPS13A-211ENST00000484581 LORP23490 312 aaPredicted RBP8.7□□□□□ -1.02
VPS13A-211ENST00000484581 GMPRP36959 345 aa8.7□□□□□ -1.02
VPS13A-211ENST00000484581 CSPP1Q1MSJ5 1256 aa8.7□□□□□ -1.02
VPS13A-211ENST00000484581 CFAP99D6REC4 459 aa8.69□□□□□ -1.02
VPS13A-211ENST00000484581 PRPF38BQ5VTL8 546 aaKnown RBP8.69□□□□□ -1.02
VPS13A-211ENST00000484581 ZSCAN1Q8NBB4 408 aa8.69□□□□□ -1.02
VPS13A-211ENST00000484581 NXF1Q9UBU9 619 aaKnown RBP8.69□□□□□ -1.02
VPS13A-211ENST00000484581 NUTM2BA6NNL0 878 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-211ENST00000484581 NUTM2EB1AL46 878 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-211ENST00000484581 NUTM2DQ5VT03 806 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-211ENST00000484581 NUTM2AQ8IVF1 878 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-211ENST00000484581 TLL2Q9Y6L7 1015 aa8.68□□□□□ -1.02
VPS13A-211ENST00000484581 PDE4DQ08499 809 aa8.67□□□□□ -1.02
VPS13A-211ENST00000484581 FAM174AQ8TBP5 190 aa8.67□□□□□ -1.02
VPS13A-211ENST00000484581 CABLES1Q8TDN4 633 aa8.67□□□□□ -1.02
VPS13A-211ENST00000484581 TSC1Q92574 1164 aa8.67□□□□□ -1.02
VPS13A-211ENST00000484581 BMP1P13497 986 aa8.66□□□□□ -1.02
VPS13A-211ENST00000484581 AGERQ15109 404 aa8.66□□□□□ -1.02
VPS13A-211ENST00000484581 MPNDQ8N594 471 aa8.66□□□□□ -1.02
VPS13A-211ENST00000484581 NNTQ13423 1086 aa8.65□□□□□ -1.02
VPS13A-211ENST00000484581 IRF7Q92985 503 aa8.65□□□□□ -1.02
VPS13A-211ENST00000484581 ARID5BQ14865 1188 aa8.64□□□□□ -1.03
VPS13A-211ENST00000484581 MYSM1Q5VVJ2 828 aa8.64□□□□□ -1.03
VPS13A-211ENST00000484581 TRIM46Q7Z4K8 759 aa8.64□□□□□ -1.03
VPS13A-211ENST00000484581 NPAS3Q8IXF0 933 aa8.64□□□□□ -1.03
VPS13A-211ENST00000484581 MAP10Q9P2G4 905 aa8.64□□□□□ -1.03
VPS13A-211ENST00000484581 F12P00748 615 aaPredicted RBP8.62□□□□□ -1.03
VPS13A-211ENST00000484581 VEGFBP49765 207 aa8.62□□□□□ -1.03
VPS13A-211ENST00000484581 WDR4P57081 412 aaKnown RBP8.62□□□□□ -1.03
VPS13A-211ENST00000484581 SCARF1Q14162 830 aa8.62□□□□□ -1.03
VPS13A-211ENST00000484581 FOXJ1Q92949 421 aa8.62□□□□□ -1.03
VPS13A-211ENST00000484581 GPBP1L1Q9HC44 474 aaPredicted RBP8.62□□□□□ -1.03
VPS13A-211ENST00000484581 LIMD1Q9UGP4 676 aa8.62□□□□□ -1.03
VPS13A-211ENST00000484581 H3BM21 787 aa8.61□□□□□ -1.03
VPS13A-211ENST00000484581 SUPT5HO00267 1087 aaKnown RBP8.61□□□□□ -1.03
VPS13A-211ENST00000484581 ADH1CP00326 375 aa8.61□□□□□ -1.03
VPS13A-211ENST00000484581 QPCTQ16769 361 aa8.61□□□□□ -1.03
VPS13A-211ENST00000484581 TUSC1Q2TAM9 212 aa8.61□□□□□ -1.03
VPS13A-211ENST00000484581 BPHLQ86WA6 291 aaPredicted RBP8.61□□□□□ -1.03
VPS13A-211ENST00000484581 ARMC2Q8NEN0 867 aa8.61□□□□□ -1.03
VPS13A-211ENST00000484581 RSPH6AQ9H0K4 717 aa8.61□□□□□ -1.03
VPS13A-211ENST00000484581 ERBB4Q15303 1308 aa8.6□□□□□ -1.03
VPS13A-211ENST00000484581 PER1O15534 1290 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-211ENST00000484581 LILRB3O75022 631 aa8.6□□□□□ -1.03
VPS13A-211ENST00000484581 HELBQ8NG08 1087 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-211ENST00000484581 ZFP42Q96MM3 310 aa8.6□□□□□ -1.03
VPS13A-211ENST00000484581 KDM4CQ9H3R0 1056 aa8.6□□□□□ -1.03
VPS13A-211ENST00000484581 MRPL14Q6P1L8 145 aaKnown RBP8.59□□□□□ -1.03
VPS13A-211ENST00000484581 CDK15Q96Q40 435 aa8.59□□□□□ -1.03
VPS13A-211ENST00000484581 TIMP2P16035 220 aa8.58□□□□□ -1.04
VPS13A-211ENST00000484581 NR5A1Q13285 461 aa8.58□□□□□ -1.04
VPS13A-211ENST00000484581 POLR3EQ9NVU0 708 aa8.58□□□□□ -1.04
VPS13A-211ENST00000484581 CLK2P49760 499 aaKnown RBP8.57□□□□□ -1.04
VPS13A-211ENST00000484581 RTL5Q5HYW3 569 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-211ENST00000484581 NBPF14Q5TI25 921 aa8.56□□□□□ -1.04
VPS13A-211ENST00000484581 PURBQ96QR8 312 aaKnown RBP8.56□□□□□ -1.04
VPS13A-211ENST00000484581 ZIC2O95409 532 aaPredicted RBP8.55□□□□□ -1.04
VPS13A-211ENST00000484581 SUZ12Q15022 739 aaKnown RBP8.55□□□□□ -1.04
VPS13A-211ENST00000484581 C4orf48Q5BLP8 95 aa8.55□□□□□ -1.04
VPS13A-211ENST00000484581 IL27Q8NEV9 243 aa8.55□□□□□ -1.04
VPS13A-211ENST00000484581 KLF16Q9BXK1 252 aaPredicted RBP8.55□□□□□ -1.04
VPS13A-211ENST00000484581 GRM5P41594 1212 aa8.54□□□□□ -1.04
VPS13A-211ENST00000484581 ATP1B4Q9UN42 357 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-211ENST00000484581 UPP2O95045 317 aa8.53□□□□□ -1.04
VPS13A-211ENST00000484581 ZFAND3Q9H8U3 227 aa8.53□□□□□ -1.04
VPS13A-211ENST00000484581 MAGEB6P1A0A0J9YX57 407 aa8.52□□□□□ -1.05
VPS13A-211ENST00000484581 NR3C2P08235 984 aa8.52□□□□□ -1.05
VPS13A-211ENST00000484581 C6orf118Q5T5N4 469 aa8.52□□□□□ -1.05
VPS13A-211ENST00000484581 VASH1Q7L8A9 365 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-211ENST00000484581 ITPKCQ96DU7 683 aa8.52□□□□□ -1.05
VPS13A-211ENST00000484581 ZMYND15Q9H091 742 aa8.51□□□□□ -1.05
VPS13A-211ENST00000484581 MAN1A2O60476 641 aa8.5□□□□□ -1.05
VPS13A-211ENST00000484581 BMP2P12643 396 aa8.5□□□□□ -1.05
VPS13A-211ENST00000484581 CTDSPL2Q05D32 466 aa8.5□□□□□ -1.05
VPS13A-211ENST00000484581 SH3BP5LQ7L8J4 393 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms