RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 ORAI2Q96SN7 254 aa11.25□□□□□ -0.61
SYNE1-225ENST00000481502 SBNO1A3KN83 1393 aa11.25□□□□□ -0.61
SYNE1-225ENST00000481502 NSD3Q9BZ95 1437 aa11.25□□□□□ -0.61
SYNE1-225ENST00000481502 AKAP12Q02952 1782 aa11.24□□□□□ -0.61
SYNE1-225ENST00000481502 PMFBP1Q8TBY8 1022 aa11.24□□□□□ -0.61
SYNE1-225ENST00000481502 PRKRIP1Q9H875 184 aaPredicted RBP11.24□□□□□ -0.61
SYNE1-225ENST00000481502 TTC21BQ7Z4L5 1316 aa11.24□□□□□ -0.61
SYNE1-225ENST00000481502 USP31Q70CQ4 1352 aa11.24□□□□□ -0.61
SYNE1-225ENST00000481502 FYB1O15117 783 aa11.23□□□□□ -0.61
SYNE1-225ENST00000481502 SOS2Q07890 1332 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-225ENST00000481502 MON2Q7Z3U7 1717 aa11.23□□□□□ -0.61
SYNE1-225ENST00000481502 RGPD8O14715 1765 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-225ENST00000481502 FOXO3O43524 673 aa11.22□□□□□ -0.61
SYNE1-225ENST00000481502 KRT28Q7Z3Y7 464 aa11.22□□□□□ -0.61
SYNE1-225ENST00000481502 PARD3Q8TEW0 1356 aa11.22□□□□□ -0.61
SYNE1-225ENST00000481502 CCER2I3L3R5 266 aa11.21□□□□□ -0.61
SYNE1-225ENST00000481502 ARHGEF10O15013 1369 aa11.2□□□□□ -0.62
SYNE1-225ENST00000481502 AATKQ6ZMQ8 1374 aa11.2□□□□□ -0.62
SYNE1-225ENST00000481502 NLRP13Q86W25 1043 aa11.2□□□□□ -0.62
SYNE1-225ENST00000481502 COG3Q96JB2 828 aa11.2□□□□□ -0.62
SYNE1-225ENST00000481502 NRKQ7Z2Y5 1582 aa11.2□□□□□ -0.62
SYNE1-225ENST00000481502 MYBBP1AQ9BQG0 1328 aaKnown RBP11.19□□□□□ -0.62
SYNE1-225ENST00000481502 UBAP1LF5GYI3 381 aa11.19□□□□□ -0.62
SYNE1-225ENST00000481502 MORC1Q86VD1 984 aa11.19□□□□□ -0.62
SYNE1-225ENST00000481502 KCNH5Q8NCM2 988 aa11.19□□□□□ -0.62
SYNE1-225ENST00000481502 LRRC59Q96AG4 307 aaKnown RBP11.19□□□□□ -0.62
SYNE1-225ENST00000481502 AHDC1Q5TGY3 1603 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-225ENST00000481502 KIF24Q5T7B8 1368 aa11.18□□□□□ -0.62
SYNE1-225ENST00000481502 USP54Q70EL1 1684 aa11.18□□□□□ -0.62
SYNE1-225ENST00000481502 SPATA31A3Q5VYP0 1347 aa11.18□□□□□ -0.62
SYNE1-225ENST00000481502 ABTB2Q8N961 1025 aa11.18□□□□□ -0.62
SYNE1-225ENST00000481502 PXDNQ92626 1479 aa11.18□□□□□ -0.62
SYNE1-225ENST00000481502 NLRP6P59044 892 aa11.17□□□□□ -0.62
SYNE1-225ENST00000481502 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.17□□□□□ -0.62
SYNE1-225ENST00000481502 OVOS2A0A0J9YW53 1432 aa11.17□□□□□ -0.62
SYNE1-225ENST00000481502 TNS3Q68CZ2 1445 aa11.17□□□□□ -0.62
SYNE1-225ENST00000481502 OVOS2Q6IE36 1432 aa11.17□□□□□ -0.62
SYNE1-225ENST00000481502 NHSL1Q5SYE7 1610 aa11.17□□□□□ -0.62
SYNE1-225ENST00000481502 CC2D1BQ5T0F9 858 aaKnown RBP11.16□□□□□ -0.62
SYNE1-225ENST00000481502 TRPM3Q9HCF6 1732 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-225ENST00000481502 ANKRD26Q9UPS8 1709 aa11.15□□□□□ -0.62
SYNE1-225ENST00000481502 USP19O94966 1318 aa11.15□□□□□ -0.62
SYNE1-225ENST00000481502 PAK3O75914 559 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-225ENST00000481502 NME9Q86XW9 330 aa11.15□□□□□ -0.62
SYNE1-225ENST00000481502 GGNBP2Q9H3C7 697 aa11.15□□□□□ -0.62
SYNE1-225ENST00000481502 INSRP06213 1382 aa11.15□□□□□ -0.63
SYNE1-225ENST00000481502 ROBO1Q9Y6N7 1651 aa11.14□□□□□ -0.63
SYNE1-225ENST00000481502 KIF20BQ96Q89 1820 aa11.14□□□□□ -0.63
SYNE1-225ENST00000481502 PPP2R1AP30153 589 aa11.13□□□□□ -0.63
SYNE1-225ENST00000481502 ALS2Q96Q42 1657 aa11.13□□□□□ -0.63
SYNE1-225ENST00000481502 MED1Q15648 1581 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-225ENST00000481502 SMG6Q86US8 1419 aaKnown RBP11.12□□□□□ -0.63
SYNE1-225ENST00000481502 GCP02774 474 aa11.12□□□□□ -0.63
SYNE1-225ENST00000481502 MIER1Q8N108 512 aa11.12□□□□□ -0.63
SYNE1-225ENST00000481502 CFAP53Q96M91 514 aa11.12□□□□□ -0.63
SYNE1-225ENST00000481502 SLIT3O75094 1523 aa11.12□□□□□ -0.63
SYNE1-225ENST00000481502 PNPLA6Q8IY17 1366 aa11.12□□□□□ -0.63
SYNE1-225ENST00000481502 PIK3C2AO00443 1686 aa11.11□□□□□ -0.63
SYNE1-225ENST00000481502 CNKSR2Q8WXI2 1034 aa11.11□□□□□ -0.63
SYNE1-225ENST00000481502 POLKQ9UBT6 870 aa11.11□□□□□ -0.63
SYNE1-225ENST00000481502 RTL1A6NKG5 1358 aa11.11□□□□□ -0.63
SYNE1-225ENST00000481502 CPDO75976 1380 aa11.1□□□□□ -0.63
SYNE1-225ENST00000481502 ABCC6O95255 1503 aa11.09□□□□□ -0.63
SYNE1-225ENST00000481502 MTHFSP49914 203 aa11.09□□□□□ -0.63
SYNE1-225ENST00000481502 PIP4K2BP78356 416 aa11.09□□□□□ -0.63
SYNE1-225ENST00000481502 XPCQ01831 940 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-225ENST00000481502 JCADQ9P266 1359 aa11.08□□□□□ -0.64
SYNE1-225ENST00000481502 LMOD2Q6P5Q4 547 aa11.08□□□□□ -0.64
SYNE1-225ENST00000481502 ARHGEF25Q86VW2 580 aa11.08□□□□□ -0.64
SYNE1-225ENST00000481502 DDX17Q92841 729 aaKnown RBP11.08□□□□□ -0.64
SYNE1-225ENST00000481502 NUDCQ9Y266 331 aa11.08□□□□□ -0.64
SYNE1-225ENST00000481502 COL16A1Q07092 1604 aaPredicted RBP11.08□□□□□ -0.64
SYNE1-225ENST00000481502 COL22A1Q8NFW1 1626 aaPredicted RBP11.08□□□□□ -0.64
SYNE1-225ENST00000481502 CDK12Q9NYV4 1490 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-225ENST00000481502 FLT4P35916 1363 aa11.07□□□□□ -0.64
SYNE1-225ENST00000481502 PHRF1Q9P1Y6 1649 aaKnown RBP11.07□□□□□ -0.64
SYNE1-225ENST00000481502 ZRANB1Q9UGI0 708 aa11.07□□□□□ -0.64
SYNE1-225ENST00000481502 SPATA31A6Q5VVP1 1343 aa11.07□□□□□ -0.64
SYNE1-225ENST00000481502 PHLPP1O60346 1717 aa11.06□□□□□ -0.64
SYNE1-225ENST00000481502 NFAT5O94916 1531 aa11.06□□□□□ -0.64
SYNE1-225ENST00000481502 FBXO41Q8TF61 875 aa11.06□□□□□ -0.64
SYNE1-225ENST00000481502 IP6K1Q92551 441 aa11.06□□□□□ -0.64
SYNE1-225ENST00000481502 PNNQ9H307 717 aaKnown RBP11.06□□□□□ -0.64
SYNE1-225ENST00000481502 MRS2Q9HD23 443 aa11.06□□□□□ -0.64
SYNE1-225ENST00000481502 BLMP54132 1417 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-225ENST00000481502 MAP3K19Q56UN5 1328 aa11.06□□□□□ -0.64
SYNE1-225ENST00000481502 AMPHP49418 695 aa11.05□□□□□ -0.64
SYNE1-225ENST00000481502 NUTM2GQ5VZR2 741 aa11.05□□□□□ -0.64
SYNE1-225ENST00000481502 PNISRQ8TF01 805 aaKnown RBP11.05□□□□□ -0.64
SYNE1-225ENST00000481502 MARF1Q9Y4F3 1742 aaKnown RBP11.05□□□□□ -0.64
SYNE1-225ENST00000481502 MAP2P11137 1827 aaKnown RBP11.05□□□□□ -0.64
SYNE1-225ENST00000481502 PLEKHG2Q9H7P9 1386 aa11.04□□□□□ -0.64
SYNE1-225ENST00000481502 DIAPH1O60610 1272 aaKnown RBP11.04□□□□□ -0.64
SYNE1-225ENST00000481502 TNNT2P45379 298 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-225ENST00000481502 HOXC9P31274 260 aa11.03□□□□□ -0.64
SYNE1-225ENST00000481502 HAP1P54257 671 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-225ENST00000481502 NCBP3Q53F19 620 aaKnown RBP11.03□□□□□ -0.64
SYNE1-225ENST00000481502 NGEFQ8N5V2 710 aa11.03□□□□□ -0.64
SYNE1-225ENST00000481502 EMILIN1Q9Y6C2 1016 aa11.03□□□□□ -0.64
SYNE1-225ENST00000481502 SHPRHQ149N8 1683 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms