RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 PAK3O75914 559 aaPredicted RBP16.35■□□□□ 0.21
CCM2-213ENST00000480658 NBPF1Q3BBV0 1214 aa16.35■□□□□ 0.21
CCM2-213ENST00000480658 EVC2Q86UK5 1308 aa16.35■□□□□ 0.21
CCM2-213ENST00000480658 TONSLQ96HA7 1378 aa16.35■□□□□ 0.21
CCM2-213ENST00000480658 NEUROD1Q13562 356 aa16.34■□□□□ 0.21
CCM2-213ENST00000480658 VPS72Q15906 364 aa16.34■□□□□ 0.21
CCM2-213ENST00000480658 CCDC125Q86Z20 511 aa16.34■□□□□ 0.21
CCM2-213ENST00000480658 RALGAPBQ86X10 1494 aa16.34■□□□□ 0.21
CCM2-213ENST00000480658 PPIP5K1Q6PFW1 1433 aa16.33■□□□□ 0.2
CCM2-213ENST00000480658 ACEP12821 1306 aa16.32■□□□□ 0.2
CCM2-213ENST00000480658 SBNO2Q9Y2G9 1366 aa16.32■□□□□ 0.2
CCM2-213ENST00000480658 CRYBG1Q9Y4K1 1723 aa16.31■□□□□ 0.2
CCM2-213ENST00000480658 SLC24A1O60721 1099 aa16.31■□□□□ 0.2
CCM2-213ENST00000480658 SIN3AQ96ST3 1273 aa16.31■□□□□ 0.2
CCM2-213ENST00000480658 NBPF8Q3BBV2 869 aa16.3■□□□□ 0.2
CCM2-213ENST00000480658 CABLES1Q8TDN4 633 aa16.3■□□□□ 0.2
CCM2-213ENST00000480658 PHRF1Q9P1Y6 1649 aaKnown RBP16.3■□□□□ 0.2
CCM2-213ENST00000480658 GLI3P10071 1580 aa16.3■□□□□ 0.2
CCM2-213ENST00000480658 PRDM11Q9NQV5 511 aa16.29■□□□□ 0.2
CCM2-213ENST00000480658 CCDC9Q9Y3X0 531 aaKnown RBP16.29■□□□□ 0.2
CCM2-213ENST00000480658 NRAPQ86VF7 1730 aa16.28■□□□□ 0.2
CCM2-213ENST00000480658 NLRP13Q86W25 1043 aa16.27■□□□□ 0.2
CCM2-213ENST00000480658 ABTB2Q8N961 1025 aa16.27■□□□□ 0.2
CCM2-213ENST00000480658 BTG4Q9NY30 223 aa16.27■□□□□ 0.2
CCM2-213ENST00000480658 FAM83GA6ND36 823 aa16.26■□□□□ 0.19
CCM2-213ENST00000480658 ONECUT3O60422 494 aaPredicted RBP16.26■□□□□ 0.19
CCM2-213ENST00000480658 ZNF692Q9BU19 519 aaPredicted RBP16.26■□□□□ 0.19
CCM2-213ENST00000480658 USP6P35125 1406 aa16.26■□□□□ 0.19
CCM2-213ENST00000480658 CPDO75976 1380 aa16.26■□□□□ 0.19
CCM2-213ENST00000480658 CARD11Q9BXL7 1154 aa16.25■□□□□ 0.19
CCM2-213ENST00000480658 NRKQ7Z2Y5 1582 aa16.25■□□□□ 0.19
CCM2-213ENST00000480658 CABP2Q9NPB3 220 aa16.24■□□□□ 0.19
CCM2-213ENST00000480658 KIAA0232Q92628 1395 aa16.24■□□□□ 0.19
CCM2-213ENST00000480658 USP19O94966 1318 aa16.23■□□□□ 0.19
CCM2-213ENST00000480658 BLMP54132 1417 aaPredicted RBP16.23■□□□□ 0.19
CCM2-213ENST00000480658 PLEKHG5O94827 1062 aa16.23■□□□□ 0.19
CCM2-213ENST00000480658 CLSPNQ9HAW4 1339 aa16.22■□□□□ 0.19
CCM2-213ENST00000480658 SF3B2Q13435 895 aaKnown RBP16.22■□□□□ 0.19
CCM2-213ENST00000480658 SEPT12Q8IYM1 358 aa16.22■□□□□ 0.19
CCM2-213ENST00000480658 CABP1Q9NZU7 370 aa16.22■□□□□ 0.19
CCM2-213ENST00000480658 TTC21AQ8NDW8 1320 aa16.21■□□□□ 0.19
CCM2-213ENST00000480658 A0A0G2JS52 829 aa16.21■□□□□ 0.19
CCM2-213ENST00000480658 MYT1Q01538 1121 aa16.21■□□□□ 0.19
CCM2-213ENST00000480658 PUS7Q96PZ0 661 aaKnown RBP16.21■□□□□ 0.19
CCM2-213ENST00000480658 NINLQ9Y2I6 1382 aa16.21■□□□□ 0.19
CCM2-213ENST00000480658 SPATA31A5Q5VU36 1347 aa16.2■□□□□ 0.18
CCM2-213ENST00000480658 SPATA31A7Q8IWB4 1347 aa16.2■□□□□ 0.18
CCM2-213ENST00000480658 KRT27Q7Z3Y8 459 aa16.2■□□□□ 0.18
CCM2-213ENST00000480658 KCNH5Q8NCM2 988 aa16.19■□□□□ 0.18
CCM2-213ENST00000480658 TIMELESSQ9UNS1 1208 aa16.19■□□□□ 0.18
CCM2-213ENST00000480658 SLIT3O75094 1523 aa16.19■□□□□ 0.18
CCM2-213ENST00000480658 GCP02774 474 aa16.18■□□□□ 0.18
CCM2-213ENST00000480658 SSH2Q76I76 1423 aa16.18■□□□□ 0.18
CCM2-213ENST00000480658 AKAP12Q02952 1782 aa16.18■□□□□ 0.18
CCM2-213ENST00000480658 C11orf95C9JLR9 678 aaPredicted RBP16.17■□□□□ 0.18
CCM2-213ENST00000480658 EVA1CP58658 441 aa16.17■□□□□ 0.18
CCM2-213ENST00000480658 THRAP3Q9Y2W1 955 aaKnown RBP16.17■□□□□ 0.18
CCM2-213ENST00000480658 ABCC6O95255 1503 aa16.17■□□□□ 0.18
CCM2-213ENST00000480658 LMO7Q8WWI1 1683 aa16.17■□□□□ 0.18
CCM2-213ENST00000480658 THSD7AQ9UPZ6 1657 aa16.17■□□□□ 0.18
CCM2-213ENST00000480658 KTN1Q86UP2 1357 aaKnown RBP16.16■□□□□ 0.18
CCM2-213ENST00000480658 NLRP6P59044 892 aa16.16■□□□□ 0.18
CCM2-213ENST00000480658 ZC3H6P61129 1189 aaKnown RBP16.16■□□□□ 0.18
CCM2-213ENST00000480658 FAM98CQ17RN3 349 aaKnown RBP16.16■□□□□ 0.18
CCM2-213ENST00000480658 CPSF1Q10570 1443 aaKnown RBP16.16■□□□□ 0.18
CCM2-213ENST00000480658 SPATA31A1Q5TZJ5 1347 aa16.16■□□□□ 0.18
CCM2-213ENST00000480658 PIK3C2AO00443 1686 aa16.15■□□□□ 0.18
CCM2-213ENST00000480658 NUTM2GQ5VZR2 741 aa16.15■□□□□ 0.18
CCM2-213ENST00000480658 EP400Q96L91 3159 aa16.15■□□□□ 0.18
CCM2-213ENST00000480658 BRWD3Q6RI45 1802 aa16.15■□□□□ 0.18
CCM2-213ENST00000480658 AATKQ6ZMQ8 1374 aa16.14■□□□□ 0.17
CCM2-213ENST00000480658 MON2Q7Z3U7 1717 aa16.14■□□□□ 0.17
CCM2-213ENST00000480658 BARGINQ6ZT62 677 aa16.14■□□□□ 0.17
CCM2-213ENST00000480658 HDGFL2Q7Z4V5 671 aaPredicted RBP16.14■□□□□ 0.17
CCM2-213ENST00000480658 TERF2IPQ9NYB0 399 aa16.14■□□□□ 0.17
CCM2-213ENST00000480658 ZRANB1Q9UGI0 708 aa16.14■□□□□ 0.17
CCM2-213ENST00000480658 STRN4Q9NRL3 753 aa16.13■□□□□ 0.17
CCM2-213ENST00000480658 COL5A2P05997 1499 aaPredicted RBP16.13■□□□□ 0.17
CCM2-213ENST00000480658 RGPD1P0DJD0 1748 aa16.13■□□□□ 0.17
CCM2-213ENST00000480658 TTC21BQ7Z4L5 1316 aa16.13■□□□□ 0.17
CCM2-213ENST00000480658 CRB1P82279 1406 aa16.12■□□□□ 0.17
CCM2-213ENST00000480658 CHRNA2Q15822 529 aa16.12■□□□□ 0.17
CCM2-213ENST00000480658 USP54Q70EL1 1684 aa16.11■□□□□ 0.17
CCM2-213ENST00000480658 EDC4Q6P2E9 1401 aaKnown RBP16.11■□□□□ 0.17
CCM2-213ENST00000480658 BAG6P46379 1132 aa16.11■□□□□ 0.17
CCM2-213ENST00000480658 CDCA8Q53HL2 280 aa16.11■□□□□ 0.17
CCM2-213ENST00000480658 TCP11L2Q8N4U5 519 aa16.11■□□□□ 0.17
CCM2-213ENST00000480658 CAMTA1Q9Y6Y1 1673 aa16.11■□□□□ 0.17
CCM2-213ENST00000480658 PDE3BQ13370 1112 aa16.09■□□□□ 0.17
CCM2-213ENST00000480658 FAM196AQ6ZSG2 479 aa16.09■□□□□ 0.17
CCM2-213ENST00000480658 CDCA7Q9BWT1 371 aaPredicted RBP16.09■□□□□ 0.17
CCM2-213ENST00000480658 USP31Q70CQ4 1352 aa16.09■□□□□ 0.17
CCM2-213ENST00000480658 TMC1Q8TDI8 760 aa16.08■□□□□ 0.16
CCM2-213ENST00000480658 DISP2A7MBM2 1401 aa16.08■□□□□ 0.16
CCM2-213ENST00000480658 TMF1P82094 1093 aa16.07■□□□□ 0.16
CCM2-213ENST00000480658 PARD3Q8TEW0 1356 aa16.07■□□□□ 0.16
CCM2-213ENST00000480658 PARP4Q9UKK3 1724 aaKnown RBP16.07■□□□□ 0.16
CCM2-213ENST00000480658 USP47Q96K76 1375 aa16.06■□□□□ 0.16
CCM2-213ENST00000480658 WDR17Q8IZU2 1322 aa16.06■□□□□ 0.16
CCM2-213ENST00000480658 USP35Q9P2H5 1018 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms