RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 MYOM1P52179 1685 aa11.37□□□□□ -0.59
USP54-212ENST00000480210 ALS2Q96Q42 1657 aa11.37□□□□□ -0.59
USP54-212ENST00000480210 TNS3Q68CZ2 1445 aa11.37□□□□□ -0.59
USP54-212ENST00000480210 EDC4Q6P2E9 1401 aaKnown RBP11.37□□□□□ -0.59
USP54-212ENST00000480210 C11orf95C9JLR9 678 aaPredicted RBP11.37□□□□□ -0.59
USP54-212ENST00000480210 ILDR1Q86SU0 546 aaPredicted RBP11.37□□□□□ -0.59
USP54-212ENST00000480210 NLRP13Q86W25 1043 aa11.37□□□□□ -0.59
USP54-212ENST00000480210 POLR3GLQ9BT43 218 aa11.37□□□□□ -0.59
USP54-212ENST00000480210 TTC21BQ7Z4L5 1316 aa11.36□□□□□ -0.59
USP54-212ENST00000480210 SSH2Q76I76 1423 aa11.36□□□□□ -0.59
USP54-212ENST00000480210 COL22A1Q8NFW1 1626 aaPredicted RBP11.36□□□□□ -0.59
USP54-212ENST00000480210 PAK3O75914 559 aaPredicted RBP11.36□□□□□ -0.59
USP54-212ENST00000480210 DDX17Q92841 729 aaKnown RBP11.36□□□□□ -0.59
USP54-212ENST00000480210 A0A1W2PP64 1363 aa11.36□□□□□ -0.59
USP54-212ENST00000480210 CD163L1Q9NR16 1453 aa11.36□□□□□ -0.59
USP54-212ENST00000480210 ABTB2Q8N961 1025 aa11.35□□□□□ -0.59
USP54-212ENST00000480210 WASHC2AQ641Q2 1341 aa11.35□□□□□ -0.59
USP54-212ENST00000480210 PNPLA6Q8IY17 1366 aa11.34□□□□□ -0.59
USP54-212ENST00000480210 ZNF316A6NFI3 1004 aaPredicted RBP11.34□□□□□ -0.59
USP54-212ENST00000480210 XPCQ01831 940 aaPredicted RBP11.34□□□□□ -0.59
USP54-212ENST00000480210 PANK3Q9H999 370 aa11.34□□□□□ -0.59
USP54-212ENST00000480210 NRKQ7Z2Y5 1582 aa11.33□□□□□ -0.6
USP54-212ENST00000480210 USP31Q70CQ4 1352 aa11.33□□□□□ -0.6
USP54-212ENST00000480210 LMOD2Q6P5Q4 547 aa11.33□□□□□ -0.6
USP54-212ENST00000480210 KCNH5Q8NCM2 988 aa11.33□□□□□ -0.6
USP54-212ENST00000480210 KNSTRNQ9Y448 316 aa11.33□□□□□ -0.6
USP54-212ENST00000480210 USP54Q70EL1 1684 aa11.33□□□□□ -0.6
USP54-212ENST00000480210 CGNL1Q0VF96 1302 aa11.33□□□□□ -0.6
USP54-212ENST00000480210 NLRP6P59044 892 aa11.32□□□□□ -0.6
USP54-212ENST00000480210 KIF20BQ96Q89 1820 aa11.32□□□□□ -0.6
USP54-212ENST00000480210 MED1Q15648 1581 aaPredicted RBP11.32□□□□□ -0.6
USP54-212ENST00000480210 NSD2O96028 1365 aa11.31□□□□□ -0.6
USP54-212ENST00000480210 MARF1Q9Y4F3 1742 aaKnown RBP11.31□□□□□ -0.6
USP54-212ENST00000480210 HAP1P54257 671 aaPredicted RBP11.3□□□□□ -0.6
USP54-212ENST00000480210 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.3□□□□□ -0.6
USP54-212ENST00000480210 COG3Q96JB2 828 aa11.3□□□□□ -0.6
USP54-212ENST00000480210 CARD14Q9BXL6 1004 aa11.3□□□□□ -0.6
USP54-212ENST00000480210 PIK3C2AO00443 1686 aa11.3□□□□□ -0.6
USP54-212ENST00000480210 NPC1L1Q9UHC9 1359 aa11.29□□□□□ -0.6
USP54-212ENST00000480210 NSD3Q9BZ95 1437 aa11.29□□□□□ -0.6
USP54-212ENST00000480210 FYB1O15117 783 aa11.29□□□□□ -0.6
USP54-212ENST00000480210 PER1O15534 1290 aaPredicted RBP11.29□□□□□ -0.6
USP54-212ENST00000480210 USP19O94966 1318 aa11.29□□□□□ -0.6
USP54-212ENST00000480210 ANKRD26Q9UPS8 1709 aa11.29□□□□□ -0.6
USP54-212ENST00000480210 CRYBG1Q9Y4K1 1723 aa11.29□□□□□ -0.6
USP54-212ENST00000480210 ABCA3Q99758 1704 aa11.27□□□□□ -0.61
USP54-212ENST00000480210 SLIT3O75094 1523 aa11.27□□□□□ -0.61
USP54-212ENST00000480210 GCP02774 474 aa11.27□□□□□ -0.61
USP54-212ENST00000480210 MAP2P11137 1827 aaKnown RBP11.27□□□□□ -0.61
USP54-212ENST00000480210 PHRF1Q9P1Y6 1649 aaKnown RBP11.27□□□□□ -0.61
USP54-212ENST00000480210 MEX3CQ5U5Q3 659 aaKnown RBP11.26□□□□□ -0.61
USP54-212ENST00000480210 NME9Q86XW9 330 aa11.26□□□□□ -0.61
USP54-212ENST00000480210 CPDO75976 1380 aa11.26□□□□□ -0.61
USP54-212ENST00000480210 OVOS2A0A0J9YW53 1432 aa11.26□□□□□ -0.61
USP54-212ENST00000480210 OVOS2Q6IE36 1432 aa11.26□□□□□ -0.61
USP54-212ENST00000480210 NUTM2BA6NNL0 878 aaPredicted RBP11.25□□□□□ -0.61
USP54-212ENST00000480210 NUTM2EB1AL46 878 aaPredicted RBP11.25□□□□□ -0.61
USP54-212ENST00000480210 NUTM2GQ5VZR2 741 aa11.25□□□□□ -0.61
USP54-212ENST00000480210 NUTM2AQ8IVF1 878 aaPredicted RBP11.25□□□□□ -0.61
USP54-212ENST00000480210 COL14A1Q05707 1796 aaKnown RBP11.24□□□□□ -0.61
USP54-212ENST00000480210 DDX10Q13206 875 aaKnown RBP11.24□□□□□ -0.61
USP54-212ENST00000480210 AMER1Q5JTC6 1135 aaPredicted RBP11.24□□□□□ -0.61
USP54-212ENST00000480210 GGNBP2Q9H3C7 697 aa11.24□□□□□ -0.61
USP54-212ENST00000480210 KIF24Q5T7B8 1368 aa11.24□□□□□ -0.61
USP54-212ENST00000480210 ABCC6O95255 1503 aa11.24□□□□□ -0.61
USP54-212ENST00000480210 NWD2Q9ULI1 1742 aa11.23□□□□□ -0.61
USP54-212ENST00000480210 MORC1Q86VD1 984 aa11.23□□□□□ -0.61
USP54-212ENST00000480210 CABLES1Q8TDN4 633 aa11.23□□□□□ -0.61
USP54-212ENST00000480210 AATKQ6ZMQ8 1374 aa11.23□□□□□ -0.61
USP54-212ENST00000480210 LTN1O94822 1766 aa11.23□□□□□ -0.61
USP54-212ENST00000480210 ZNF772Q68DY9 489 aaPredicted RBP11.22□□□□□ -0.61
USP54-212ENST00000480210 ARHGEF25Q86VW2 580 aa11.22□□□□□ -0.61
USP54-212ENST00000480210 FNBP4Q8N3X1 1017 aaPredicted RBP11.22□□□□□ -0.61
USP54-212ENST00000480210 NGLY1Q96IV0 654 aa11.22□□□□□ -0.61
USP54-212ENST00000480210 PRDM11Q9NQV5 511 aa11.22□□□□□ -0.61
USP54-212ENST00000480210 ADAMTS2O95450 1211 aa11.21□□□□□ -0.61
USP54-212ENST00000480210 ZC3H6P61129 1189 aaKnown RBP11.21□□□□□ -0.61
USP54-212ENST00000480210 ZRANB1Q9UGI0 708 aa11.21□□□□□ -0.61
USP54-212ENST00000480210 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.21□□□□□ -0.62
USP54-212ENST00000480210 LRP6O75581 1613 aa11.2□□□□□ -0.62
USP54-212ENST00000480210 NFAT5O94916 1531 aa11.2□□□□□ -0.62
USP54-212ENST00000480210 KIAA0232Q92628 1395 aa11.2□□□□□ -0.62
USP54-212ENST00000480210 FAM83GA6ND36 823 aa11.2□□□□□ -0.62
USP54-212ENST00000480210 C8orf37Q96NL8 207 aa11.2□□□□□ -0.62
USP54-212ENST00000480210 COL18A1P39060 1754 aa11.2□□□□□ -0.62
USP54-212ENST00000480210 RTL1A6NKG5 1358 aa11.19□□□□□ -0.62
USP54-212ENST00000480210 AMPHP49418 695 aa11.19□□□□□ -0.62
USP54-212ENST00000480210 RALBP1Q15311 655 aa11.19□□□□□ -0.62
USP54-212ENST00000480210 IP6K1Q92551 441 aa11.19□□□□□ -0.62
USP54-212ENST00000480210 SLIT2O94813 1529 aa11.19□□□□□ -0.62
USP54-212ENST00000480210 BLMP54132 1417 aaPredicted RBP11.18□□□□□ -0.62
USP54-212ENST00000480210 RGPD5Q99666 1765 aa11.18□□□□□ -0.62
USP54-212ENST00000480210 PLCH1Q4KWH8 1693 aa11.18□□□□□ -0.62
USP54-212ENST00000480210 PLEKHG5O94827 1062 aa11.18□□□□□ -0.62
USP54-212ENST00000480210 EVA1CP58658 441 aa11.18□□□□□ -0.62
USP54-212ENST00000480210 CC2D1BQ5T0F9 858 aaKnown RBP11.18□□□□□ -0.62
USP54-212ENST00000480210 UNC5CLQ8IV45 518 aa11.18□□□□□ -0.62
USP54-212ENST00000480210 USP21Q9UK80 565 aa11.18□□□□□ -0.62
USP54-212ENST00000480210 AFF2P51816 1311 aa11.17□□□□□ -0.62
USP54-212ENST00000480210 BTG4Q9NY30 223 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms