RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 TERF2IPQ9NYB0 399 aa17.47■□□□□ 0.39
BRCA1-209ENST00000470026 KIF20BQ96Q89 1820 aa17.45■□□□□ 0.38
BRCA1-209ENST00000470026 SRPK2P78362 688 aaKnown RBP17.45■□□□□ 0.38
BRCA1-209ENST00000470026 GSE1Q14687 1217 aa17.45■□□□□ 0.38
BRCA1-209ENST00000470026 GGNBP2Q9H3C7 697 aa17.45■□□□□ 0.38
BRCA1-209ENST00000470026 DZIP1LQ8IYY4 767 aaKnown RBP17.45■□□□□ 0.38
BRCA1-209ENST00000470026 SAFB2Q14151 953 aaKnown RBP eCLIP17.44■□□□□ 0.381e-6■□□□□ 10.5
BRCA1-209ENST00000470026 DLC1Q96QB1 1528 aa17.44■□□□□ 0.38
BRCA1-209ENST00000470026 PRAM1Q96QH2 718 aa17.44■□□□□ 0.38
BRCA1-209ENST00000470026 STK26Q9P289 416 aa17.44■□□□□ 0.38
BRCA1-209ENST00000470026 EXOSC9Q06265 439 aaKnown RBP17.42■□□□□ 0.38
BRCA1-209ENST00000470026 REREQ9P2R6 1566 aa17.42■□□□□ 0.38
BRCA1-209ENST00000470026 HDAC1Q13547 482 aaPredicted RBP17.42■□□□□ 0.38
BRCA1-209ENST00000470026 TSR2Q969E8 191 aaKnown RBP17.42■□□□□ 0.38
BRCA1-209ENST00000470026 TBC1D32Q96NH3 1257 aa17.42■□□□□ 0.38
BRCA1-209ENST00000470026 MINK1Q8N4C8 1332 aaPredicted RBP17.41■□□□□ 0.38
BRCA1-209ENST00000470026 U2SURPO15042 1029 aaKnown RBP17.41■□□□□ 0.38
BRCA1-209ENST00000470026 TRIM27P14373 513 aa17.41■□□□□ 0.38
BRCA1-209ENST00000470026 SETD1AO15047 1707 aaKnown RBP17.4■□□□□ 0.38
BRCA1-209ENST00000470026 BECN1Q14457 450 aa17.4■□□□□ 0.38
BRCA1-209ENST00000470026 SSH1Q8WYL5 1049 aa17.4■□□□□ 0.38
BRCA1-209ENST00000470026 PNNQ9H307 717 aaKnown RBP17.4■□□□□ 0.38
BRCA1-209ENST00000470026 ATP7BP35670 1465 aa17.4■□□□□ 0.38
BRCA1-209ENST00000470026 ATF7IPQ6VMQ6 1270 aa17.39■□□□□ 0.38
BRCA1-209ENST00000470026 SMC4Q9NTJ3 1288 aa17.39■□□□□ 0.38
BRCA1-209ENST00000470026 DIAPH1O60610 1272 aaKnown RBP17.39■□□□□ 0.37
BRCA1-209ENST00000470026 FRAT2O75474 233 aaPredicted RBP17.39■□□□□ 0.37
BRCA1-209ENST00000470026 HDGFL2Q7Z4V5 671 aaPredicted RBP17.39■□□□□ 0.37
BRCA1-209ENST00000470026 FTSJ3Q8IY81 847 aaKnown RBP17.39■□□□□ 0.37
BRCA1-209ENST00000470026 POGKQ9P215 609 aa17.39■□□□□ 0.37
BRCA1-209ENST00000470026 DDX19BQ9UMR2 479 aa17.39■□□□□ 0.37
BRCA1-209ENST00000470026 AGLP35573 1532 aa17.39■□□□□ 0.37
BRCA1-209ENST00000470026 PPIP5K1Q6PFW1 1433 aa17.38■□□□□ 0.37
BRCA1-209ENST00000470026 CDK19Q9BWU1 502 aa17.38■□□□□ 0.37
BRCA1-209ENST00000470026 LRRC7Q96NW7 1537 aa17.38■□□□□ 0.37
BRCA1-209ENST00000470026 FAM135BQ49AJ0 1406 aa17.37■□□□□ 0.37
BRCA1-209ENST00000470026 FCHSD2O94868 740 aa17.37■□□□□ 0.37
BRCA1-209ENST00000470026 BRPF1P55201 1214 aaPredicted RBP17.37■□□□□ 0.37
BRCA1-209ENST00000470026 PPP6R1Q9UPN7 881 aa17.37■□□□□ 0.37
BRCA1-209ENST00000470026 RIPK4P57078 832 aa17.36■□□□□ 0.37
BRCA1-209ENST00000470026 ANTXR1Q9H6X2 564 aa17.36■□□□□ 0.37
BRCA1-209ENST00000470026 SPATA31D1Q6ZQQ2 1576 aa17.36■□□□□ 0.37
BRCA1-209ENST00000470026 ALDH1L2Q3SY69 923 aa17.36■□□□□ 0.37
BRCA1-209ENST00000470026 FBXO31Q5XUX0 539 aaPredicted RBP17.36■□□□□ 0.37
BRCA1-209ENST00000470026 SMC5Q8IY18 1101 aa17.36■□□□□ 0.37
BRCA1-209ENST00000470026 UPF2Q9HAU5 1272 aaKnown RBP17.36■□□□□ 0.37
BRCA1-209ENST00000470026 RIMBP3CA6NJZ7 1639 aa17.36■□□□□ 0.37
BRCA1-209ENST00000470026 RIMBP3BA6NNM3 1639 aa17.36■□□□□ 0.37
BRCA1-209ENST00000470026 RIMBP3Q9UFD9 1639 aa17.36■□□□□ 0.37
BRCA1-209ENST00000470026 A2ML1A8K2U0 1454 aa17.35■□□□□ 0.37
BRCA1-209ENST00000470026 ZBTB40Q9NUA8 1239 aa17.35■□□□□ 0.37
BRCA1-209ENST00000470026 CABP1Q9NZU7 370 aa17.35■□□□□ 0.37
BRCA1-209ENST00000470026 KIF16BQ96L93 1317 aa17.34■□□□□ 0.37
BRCA1-209ENST00000470026 ZNF428Q96B54 188 aa17.34■□□□□ 0.37
BRCA1-209ENST00000470026 NOB1Q9ULX3 412 aaKnown RBP17.34■□□□□ 0.37
BRCA1-209ENST00000470026 IL27Q8NEV9 243 aa17.33■□□□□ 0.37
BRCA1-209ENST00000470026 RSPH6AQ9H0K4 717 aa17.33■□□□□ 0.37
BRCA1-209ENST00000470026 IPO8O15397 1037 aaKnown RBP17.32■□□□□ 0.36
BRCA1-209ENST00000470026 POLKQ9UBT6 870 aa17.32■□□□□ 0.36
BRCA1-209ENST00000470026 CPSF1Q10570 1443 aaKnown RBP17.32■□□□□ 0.36
BRCA1-209ENST00000470026 TMEM57Q8N5G2 664 aa17.32■□□□□ 0.36
BRCA1-209ENST00000470026 ITPRIPQ8IWB1 547 aa17.31■□□□□ 0.36
BRCA1-209ENST00000470026 TBC1D2Q9BYX2 928 aa17.31■□□□□ 0.36
BRCA1-209ENST00000470026 MAP2P11137 1827 aaKnown RBP17.3■□□□□ 0.36
BRCA1-209ENST00000470026 NRXN3Q9Y4C0 1643 aa17.3■□□□□ 0.36
BRCA1-209ENST00000470026 PIK3R4Q99570 1358 aa17.29■□□□□ 0.36
BRCA1-209ENST00000470026 RIMS2Q9UQ26 1411 aa17.29■□□□□ 0.36
BRCA1-209ENST00000470026 CDK12Q9NYV4 1490 aaPredicted RBP17.29■□□□□ 0.36
BRCA1-209ENST00000470026 EDC4Q6P2E9 1401 aaKnown RBP17.29■□□□□ 0.36
BRCA1-209ENST00000470026 DIP2BQ9P265 1576 aa17.28■□□□□ 0.36
BRCA1-209ENST00000470026 AATKQ6ZMQ8 1374 aa17.28■□□□□ 0.36
BRCA1-209ENST00000470026 PTCH1Q13635 1447 aa17.28■□□□□ 0.36
BRCA1-209ENST00000470026 PRKAR2BP31323 418 aa17.27■□□□□ 0.36
BRCA1-209ENST00000470026 NFE2L2Q16236 605 aa17.27■□□□□ 0.35
BRCA1-209ENST00000470026 ARHGAP45Q92619 1136 aa17.27■□□□□ 0.35
BRCA1-209ENST00000470026 KNDC1Q76NI1 1749 aa17.26■□□□□ 0.35
BRCA1-209ENST00000470026 NUCB1Q02818 461 aa17.26■□□□□ 0.35
BRCA1-209ENST00000470026 SENP3Q9H4L4 574 aaPredicted RBP17.26■□□□□ 0.35
BRCA1-209ENST00000470026 ZNF853P0CG23 659 aa17.26■□□□□ 0.35
BRCA1-209ENST00000470026 MON2Q7Z3U7 1717 aa17.26■□□□□ 0.35
BRCA1-209ENST00000470026 IL13P35225 146 aa17.25■□□□□ 0.35
BRCA1-209ENST00000470026 WAPLQ7Z5K2 1190 aa17.25■□□□□ 0.35
BRCA1-209ENST00000470026 C22orf23Q9BZE7 217 aa17.25■□□□□ 0.35
BRCA1-209ENST00000470026 STAG3Q9UJ98 1225 aa17.25■□□□□ 0.35
BRCA1-209ENST00000470026 VAMP4O75379 141 aa17.24■□□□□ 0.35
BRCA1-209ENST00000470026 CALD1Q05682 793 aaKnown RBP17.24■□□□□ 0.35
BRCA1-209ENST00000470026 SLKQ9H2G2 1235 aaPredicted RBP17.24■□□□□ 0.35
BRCA1-209ENST00000470026 SIRT1Q96EB6 747 aa17.24■□□□□ 0.35
BRCA1-209ENST00000470026 PHACTR3Q96KR7 559 aa17.24■□□□□ 0.35
BRCA1-209ENST00000470026 IFT57Q9NWB7 429 aa17.24■□□□□ 0.35
BRCA1-209ENST00000470026 TECPR2O15040 1411 aa17.23■□□□□ 0.35
BRCA1-209ENST00000470026 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.23■□□□□ 0.35
BRCA1-209ENST00000470026 MRPL50Q8N5N7 158 aaKnown RBP17.23■□□□□ 0.35
BRCA1-209ENST00000470026 BRPF3Q9ULD4 1205 aa17.23■□□□□ 0.35
BRCA1-209ENST00000470026 WASLO00401 505 aaPredicted RBP17.23■□□□□ 0.35
BRCA1-209ENST00000470026 AKAP12Q02952 1782 aa17.22■□□□□ 0.35
BRCA1-209ENST00000470026 ZBTB7BO15156 539 aaPredicted RBP17.22■□□□□ 0.35
BRCA1-209ENST00000470026 FBLN1P23142 703 aa17.21■□□□□ 0.35
BRCA1-209ENST00000470026 CHMP4BQ9H444 224 aaKnown RBP17.21■□□□□ 0.35
BRCA1-209ENST00000470026 C3P01024 1663 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms