RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MYH16Q9H6N6 1097 aa24.59■■□□□ 1.53
VIM-203ENST00000469543 ARHGEF40Q8TER5 1519 aa24.59■■□□□ 1.53
VIM-203ENST00000469543 DIAPH1O60610 1272 aaKnown RBP24.59■■□□□ 1.53
VIM-203ENST00000469543 A2ML1A8K2U0 1454 aa24.59■■□□□ 1.53
VIM-203ENST00000469543 CLTCQ00610 1675 aaKnown RBP24.59■■□□□ 1.53
VIM-203ENST00000469543 DEKP35659 375 aaKnown RBP24.58■■□□□ 1.53
VIM-203ENST00000469543 MAPK8IP3Q9UPT6 1336 aa24.58■■□□□ 1.53
VIM-203ENST00000469543 HMOX1P09601 288 aa24.58■■□□□ 1.52
VIM-203ENST00000469543 METP08581 1390 aa24.57■■□□□ 1.52
VIM-203ENST00000469543 RIMS2Q9UQ26 1411 aa24.57■■□□□ 1.52
VIM-203ENST00000469543 POLKQ9UBT6 870 aa24.57■■□□□ 1.52
VIM-203ENST00000469543 SEC24BO95487 1268 aa24.56■■□□□ 1.52
VIM-203ENST00000469543 NINLQ9Y2I6 1382 aa24.56■■□□□ 1.52
VIM-203ENST00000469543 EMILIN1Q9Y6C2 1016 aa24.55■■□□□ 1.52
VIM-203ENST00000469543 COL3A1P02461 1466 aaPredicted RBP24.55■■□□□ 1.52
VIM-203ENST00000469543 NME9Q86XW9 330 aa24.55■■□□□ 1.52
VIM-203ENST00000469543 NUTM2FA1L443 756 aa24.54■■□□□ 1.52
VIM-203ENST00000469543 SSH1Q8WYL5 1049 aa24.54■■□□□ 1.52
VIM-203ENST00000469543 PHACTR3Q96KR7 559 aa24.54■■□□□ 1.52
VIM-203ENST00000469543 THUMPD2Q9BTF0 503 aaKnown RBP24.54■■□□□ 1.52
VIM-203ENST00000469543 SMC4Q9NTJ3 1288 aa24.53■■□□□ 1.52
VIM-203ENST00000469543 PLPPR3Q6T4P5 718 aa24.53■■□□□ 1.52
VIM-203ENST00000469543 ESF1Q9H501 851 aaKnown RBP24.52■■□□□ 1.52
VIM-203ENST00000469543 PRKAR2BP31323 418 aa24.52■■□□□ 1.52
VIM-203ENST00000469543 ZMYM3Q14202 1370 aa24.5■■□□□ 1.51
VIM-203ENST00000469543 TRIM27P14373 513 aa24.49■■□□□ 1.51
VIM-203ENST00000469543 FTSJ3Q8IY81 847 aaKnown RBP24.49■■□□□ 1.51
VIM-203ENST00000469543 WASLO00401 505 aaPredicted RBP24.49■■□□□ 1.51
VIM-203ENST00000469543 RRS1Q15050 365 aaKnown RBP24.49■■□□□ 1.51
VIM-203ENST00000469543 ZKSCAN2Q63HK3 967 aa24.48■■□□□ 1.51
VIM-203ENST00000469543 NEFMP07197 916 aa24.48■■□□□ 1.51
VIM-203ENST00000469543 NOB1Q9ULX3 412 aaKnown RBP24.48■■□□□ 1.51
VIM-203ENST00000469543 DZIP1LQ8IYY4 767 aaKnown RBP24.48■■□□□ 1.51
VIM-203ENST00000469543 PNPLA6Q8IY17 1366 aa24.47■■□□□ 1.51
VIM-203ENST00000469543 ADGRB2O60241 1585 aa24.47■■□□□ 1.51
VIM-203ENST00000469543 MVPQ14764 893 aaKnown RBP24.47■■□□□ 1.51
VIM-203ENST00000469543 RTL5Q5HYW3 569 aaPredicted RBP24.46■■□□□ 1.51
VIM-203ENST00000469543 NUDT16Q96DE0 195 aaKnown RBP24.46■■□□□ 1.51
VIM-203ENST00000469543 PPP6R1Q9UPN7 881 aa24.46■■□□□ 1.51
VIM-203ENST00000469543 PDZRN3Q9UPQ7 1066 aa24.46■■□□□ 1.51
VIM-203ENST00000469543 RSPH6AQ9H0K4 717 aa24.46■■□□□ 1.51
VIM-203ENST00000469543 ELL2O00472 640 aaPredicted RBP24.45■■□□□ 1.5
VIM-203ENST00000469543 CEBPAP49715 358 aaPredicted RBP24.44■■□□□ 1.5
VIM-203ENST00000469543 ITPRIPQ8IWB1 547 aa24.44■■□□□ 1.5
VIM-203ENST00000469543 PPIP5K1Q6PFW1 1433 aa24.44■■□□□ 1.5
VIM-203ENST00000469543 SPATA31D1Q6ZQQ2 1576 aa24.43■■□□□ 1.5
VIM-203ENST00000469543 AGLP35573 1532 aa24.43■■□□□ 1.5
VIM-203ENST00000469543 FCHSD2O94868 740 aa24.43■■□□□ 1.5
VIM-203ENST00000469543 USP19O94966 1318 aa24.42■■□□□ 1.5
VIM-203ENST00000469543 PMFBP1Q8TBY8 1022 aa24.42■■□□□ 1.5
VIM-203ENST00000469543 DDRGK1Q96HY6 314 aa24.42■■□□□ 1.5
VIM-203ENST00000469543 MED14O60244 1454 aa24.41■■□□□ 1.5
VIM-203ENST00000469543 ATF7IPQ6VMQ6 1270 aa24.4■■□□□ 1.5
VIM-203ENST00000469543 TMEM57Q8N5G2 664 aa24.4■■□□□ 1.5
VIM-203ENST00000469543 BCL11AQ9H165 835 aa24.39■■□□□ 1.5
VIM-203ENST00000469543 TSPYL6Q8N831 410 aa24.39■■□□□ 1.49
VIM-203ENST00000469543 DAXXQ9UER7 740 aaPredicted RBP24.39■■□□□ 1.49
VIM-203ENST00000469543 PRR36Q9H6K5 1346 aa24.39■■□□□ 1.49
VIM-203ENST00000469543 FAM83GA6ND36 823 aa24.38■■□□□ 1.49
VIM-203ENST00000469543 NCBP3Q53F19 620 aaKnown RBP24.38■■□□□ 1.49
VIM-203ENST00000469543 CCDC61Q9Y6R9 512 aa24.38■■□□□ 1.49
VIM-203ENST00000469543 MAP2P11137 1827 aaKnown RBP24.38■■□□□ 1.49
VIM-203ENST00000469543 SOX12O15370 315 aa24.38■■□□□ 1.49
VIM-203ENST00000469543 IL13P35225 146 aa24.38■■□□□ 1.49
VIM-203ENST00000469543 RWDD1Q9H446 243 aaPredicted RBP24.38■■□□□ 1.49
VIM-203ENST00000469543 DCTN1Q14203 1278 aa24.37■■□□□ 1.49
VIM-203ENST00000469543 SLC26A8Q96RN1 970 aa24.37■■□□□ 1.49
VIM-203ENST00000469543 SETD1AO15047 1707 aaKnown RBP24.37■■□□□ 1.49
VIM-203ENST00000469543 NRXN3Q9Y4C0 1643 aa24.37■■□□□ 1.49
VIM-203ENST00000469543 LRRC7Q96NW7 1537 aa24.37■■□□□ 1.49
VIM-203ENST00000469543 LTKP29376 864 aa24.37■■□□□ 1.49
VIM-203ENST00000469543 ANKRD26Q9UPS8 1709 aa24.36■■□□□ 1.49
VIM-203ENST00000469543 CPSF1Q10570 1443 aaKnown RBP24.36■■□□□ 1.49
VIM-203ENST00000469543 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.35■■□□□ 1.49
VIM-203ENST00000469543 REREQ9P2R6 1566 aa24.34■■□□□ 1.49
VIM-203ENST00000469543 COG3Q96JB2 828 aa24.34■■□□□ 1.49
VIM-203ENST00000469543 CPS1P31327 1500 aa24.34■■□□□ 1.49
VIM-203ENST00000469543 ROBO2Q9HCK4 1378 aa24.34■■□□□ 1.49
VIM-203ENST00000469543 KIF20BQ96Q89 1820 aa24.34■■□□□ 1.49
VIM-203ENST00000469543 ATP7BP35670 1465 aa24.33■■□□□ 1.49
VIM-203ENST00000469543 DLC1Q96QB1 1528 aa24.32■■□□□ 1.48
VIM-203ENST00000469543 CT47B1P0C2W7 299 aaPredicted RBP24.32■■□□□ 1.48
VIM-203ENST00000469543 IL16Q14005 1332 aa24.32■■□□□ 1.48
VIM-203ENST00000469543 NFE2L2Q16236 605 aa24.32■■□□□ 1.48
VIM-203ENST00000469543 PNNQ9H307 717 aaKnown RBP24.32■■□□□ 1.48
VIM-203ENST00000469543 AEBP1Q8IUX7 1158 aa24.31■■□□□ 1.48
VIM-203ENST00000469543 FAM135BQ49AJ0 1406 aa24.31■■□□□ 1.48
VIM-203ENST00000469543 EDC4Q6P2E9 1401 aaKnown RBP24.3■■□□□ 1.48
VIM-203ENST00000469543 TNRQ92752 1358 aa24.3■■□□□ 1.48
VIM-203ENST00000469543 DDX19BQ9UMR2 479 aa24.29■■□□□ 1.48
VIM-203ENST00000469543 NFKBIBQ15653 356 aa24.29■■□□□ 1.48
VIM-203ENST00000469543 MBIPQ9NS73 344 aa24.29■■□□□ 1.48
VIM-203ENST00000469543 C1orf115Q9H7X2 142 aa24.28■■□□□ 1.48
VIM-203ENST00000469543 ZBTB40Q9NUA8 1239 aa24.28■■□□□ 1.48
VIM-203ENST00000469543 TMEM2Q9UHN6 1383 aa24.28■■□□□ 1.48
VIM-203ENST00000469543 VAMP4O75379 141 aa24.28■■□□□ 1.48
VIM-203ENST00000469543 AAMPQ13685 434 aa24.28■■□□□ 1.48
VIM-203ENST00000469543 KIF13AQ9H1H9 1805 aa24.27■■□□□ 1.47
VIM-203ENST00000469543 C8orf58Q8NAV2 365 aa24.26■■□□□ 1.47
VIM-203ENST00000469543 ACEP12821 1306 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms