RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 ZNF772Q68DY9 489 aaPredicted RBP18.47■□□□□ 0.55
COL28A1-206ENST00000465339 TNS3Q68CZ2 1445 aa18.47■□□□□ 0.55
COL28A1-206ENST00000465339 ARHGEF10O15013 1369 aa18.46■□□□□ 0.55
COL28A1-206ENST00000465339 CABP2Q9NPB3 220 aa18.46■□□□□ 0.55
COL28A1-206ENST00000465339 SBNO2Q9Y2G9 1366 aa18.45■□□□□ 0.54
COL28A1-206ENST00000465339 ADAMTS2O95450 1211 aa18.45■□□□□ 0.54
COL28A1-206ENST00000465339 TRPM3Q9HCF6 1732 aaPredicted RBP18.45■□□□□ 0.54
COL28A1-206ENST00000465339 POLR3AO14802 1390 aaPredicted RBP18.44■□□□□ 0.54
COL28A1-206ENST00000465339 LMOD2Q6P5Q4 547 aa18.44■□□□□ 0.54
COL28A1-206ENST00000465339 POTEAQ6S8J7 498 aa18.44■□□□□ 0.54
COL28A1-206ENST00000465339 NGLY1Q96IV0 654 aa18.44■□□□□ 0.54
COL28A1-206ENST00000465339 ACEP12821 1306 aa18.44■□□□□ 0.54
COL28A1-206ENST00000465339 MARF1Q9Y4F3 1742 aaKnown RBP18.43■□□□□ 0.54
COL28A1-206ENST00000465339 C8orf37Q96NL8 207 aa18.43■□□□□ 0.54
COL28A1-206ENST00000465339 AFF2P51816 1311 aa18.43■□□□□ 0.54
COL28A1-206ENST00000465339 PPIP5K1Q6PFW1 1433 aa18.42■□□□□ 0.54
COL28A1-206ENST00000465339 SLC24A1O60721 1099 aa18.42■□□□□ 0.54
COL28A1-206ENST00000465339 ALS2Q96Q42 1657 aa18.41■□□□□ 0.54
COL28A1-206ENST00000465339 PAK3O75914 559 aaPredicted RBP18.41■□□□□ 0.54
COL28A1-206ENST00000465339 HAP1P54257 671 aaPredicted RBP18.4■□□□□ 0.54
COL28A1-206ENST00000465339 CABP1Q9NZU7 370 aa18.4■□□□□ 0.54
COL28A1-206ENST00000465339 SOCS7O14512 581 aa18.39■□□□□ 0.53
COL28A1-206ENST00000465339 FNBP4Q8N3X1 1017 aaPredicted RBP18.38■□□□□ 0.53
COL28A1-206ENST00000465339 CABLES1Q8TDN4 633 aa18.38■□□□□ 0.53
COL28A1-206ENST00000465339 BRD4O60885 1362 aaPredicted RBP18.38■□□□□ 0.53
COL28A1-206ENST00000465339 ATAD2Q6PL18 1390 aa18.38■□□□□ 0.53
COL28A1-206ENST00000465339 ST20-MTHFSA0A0A6YYL1 179 aa18.37■□□□□ 0.53
COL28A1-206ENST00000465339 PUS7Q96PZ0 661 aaKnown RBP18.37■□□□□ 0.53
COL28A1-206ENST00000465339 ABCA3Q99758 1704 aa18.36■□□□□ 0.53
COL28A1-206ENST00000465339 ZNF692Q9BU19 519 aaPredicted RBP18.36■□□□□ 0.53
COL28A1-206ENST00000465339 QTRT2Q9H974 415 aaKnown RBP18.36■□□□□ 0.53
COL28A1-206ENST00000465339 RXRBP28702 533 aa18.35■□□□□ 0.53
COL28A1-206ENST00000465339 USP21Q9UK80 565 aa18.35■□□□□ 0.53
COL28A1-206ENST00000465339 PLEKHG5O94827 1062 aa18.34■□□□□ 0.53
COL28A1-206ENST00000465339 TESK2Q96S53 571 aa18.34■□□□□ 0.53
COL28A1-206ENST00000465339 USP47Q96K76 1375 aa18.33■□□□□ 0.53
COL28A1-206ENST00000465339 ABTB2Q8N961 1025 aa18.33■□□□□ 0.52
COL28A1-206ENST00000465339 AKAP12Q02952 1782 aa18.32■□□□□ 0.52
COL28A1-206ENST00000465339 CRYBG1Q9Y4K1 1723 aa18.32■□□□□ 0.52
COL28A1-206ENST00000465339 USP6P35125 1406 aa18.32■□□□□ 0.52
COL28A1-206ENST00000465339 RBM6P78332 1123 aaKnown RBP18.31■□□□□ 0.52
COL28A1-206ENST00000465339 TRPC5Q9UL62 973 aaPredicted RBP18.31■□□□□ 0.52
COL28A1-206ENST00000465339 NLRP13Q86W25 1043 aa18.3■□□□□ 0.52
COL28A1-206ENST00000465339 BCL9LQ86UU0 1499 aa18.3■□□□□ 0.52
COL28A1-206ENST00000465339 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.29■□□□□ 0.52
COL28A1-206ENST00000465339 SLIT2O94813 1529 aa18.29■□□□□ 0.52
COL28A1-206ENST00000465339 NUTM2GQ5VZR2 741 aa18.29■□□□□ 0.52
COL28A1-206ENST00000465339 UNC5CLQ8IV45 518 aa18.29■□□□□ 0.52
COL28A1-206ENST00000465339 CPSF1Q10570 1443 aaKnown RBP18.29■□□□□ 0.52
COL28A1-206ENST00000465339 CDK12Q9NYV4 1490 aaPredicted RBP18.28■□□□□ 0.52
COL28A1-206ENST00000465339 FAM83GA6ND36 823 aa18.28■□□□□ 0.52
COL28A1-206ENST00000465339 TMF1P82094 1093 aa18.28■□□□□ 0.52
COL28A1-206ENST00000465339 TMC1Q8TDI8 760 aa18.28■□□□□ 0.52
COL28A1-206ENST00000465339 ATF5Q9Y2D1 282 aaPredicted RBP18.28■□□□□ 0.52
COL28A1-206ENST00000465339 SSH2Q76I76 1423 aa18.28■□□□□ 0.52
COL28A1-206ENST00000465339 NWD2Q9ULI1 1742 aa18.28■□□□□ 0.52
COL28A1-206ENST00000465339 ATRNO75882 1429 aa18.27■□□□□ 0.52
COL28A1-206ENST00000465339 ZNF219Q9P2Y4 722 aaPredicted RBP18.27■□□□□ 0.52
COL28A1-206ENST00000465339 KTN1Q86UP2 1357 aaKnown RBP18.27■□□□□ 0.51
COL28A1-206ENST00000465339 PHRF1Q9P1Y6 1649 aaKnown RBP18.27■□□□□ 0.51
COL28A1-206ENST00000465339 PLCH1Q4KWH8 1693 aa18.26■□□□□ 0.51
COL28A1-206ENST00000465339 CDCA8Q53HL2 280 aa18.26■□□□□ 0.51
COL28A1-206ENST00000465339 SLC12A5Q9H2X9 1139 aa18.26■□□□□ 0.51
COL28A1-206ENST00000465339 TERF2IPQ9NYB0 399 aa18.26■□□□□ 0.51
COL28A1-206ENST00000465339 COL14A1Q05707 1796 aaKnown RBP18.26■□□□□ 0.51
COL28A1-206ENST00000465339 NINLQ9Y2I6 1382 aa18.26■□□□□ 0.51
COL28A1-206ENST00000465339 TTC21BQ7Z4L5 1316 aa18.25■□□□□ 0.51
COL28A1-206ENST00000465339 TTC21AQ8NDW8 1320 aa18.25■□□□□ 0.51
COL28A1-206ENST00000465339 NLRP6P59044 892 aa18.25■□□□□ 0.51
COL28A1-206ENST00000465339 HDGFL2Q7Z4V5 671 aaPredicted RBP18.25■□□□□ 0.51
COL28A1-206ENST00000465339 MON2Q7Z3U7 1717 aa18.25■□□□□ 0.51
COL28A1-206ENST00000465339 USP19O94966 1318 aa18.24■□□□□ 0.51
COL28A1-206ENST00000465339 PRDM11Q9NQV5 511 aa18.24■□□□□ 0.51
COL28A1-206ENST00000465339 GJD4Q96KN9 370 aaPredicted RBP18.23■□□□□ 0.51
COL28A1-206ENST00000465339 CD163L1Q9NR16 1453 aa18.22■□□□□ 0.51
COL28A1-206ENST00000465339 GCP02774 474 aa18.22■□□□□ 0.51
COL28A1-206ENST00000465339 ZC3H6P61129 1189 aaKnown RBP18.22■□□□□ 0.51
COL28A1-206ENST00000465339 EIF4G2P78344 907 aaKnown RBP eCLIP18.22■□□□□ 0.51
COL28A1-206ENST00000465339 BTG4Q9NY30 223 aa18.22■□□□□ 0.51
COL28A1-206ENST00000465339 PIK3C2AO00443 1686 aa18.22■□□□□ 0.51
COL28A1-206ENST00000465339 NRKQ7Z2Y5 1582 aa18.21■□□□□ 0.51
COL28A1-206ENST00000465339 KIAA0232Q92628 1395 aa18.21■□□□□ 0.51
COL28A1-206ENST00000465339 VPS72Q15906 364 aa18.21■□□□□ 0.51
COL28A1-206ENST00000465339 CPDO75976 1380 aa18.2■□□□□ 0.5
COL28A1-206ENST00000465339 ATXN8OSP0DMR3 200 aa18.19■□□□□ 0.5
COL28A1-206ENST00000465339 DSG3P32926 999 aa18.19■□□□□ 0.5
COL28A1-206ENST00000465339 NRAPQ86VF7 1730 aa18.18■□□□□ 0.5
COL28A1-206ENST00000465339 EDC4Q6P2E9 1401 aaKnown RBP18.18■□□□□ 0.5
COL28A1-206ENST00000465339 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.18■□□□□ 0.5
COL28A1-206ENST00000465339 KCNH5Q8NCM2 988 aa18.18■□□□□ 0.5
COL28A1-206ENST00000465339 SLIT3O75094 1523 aa18.18■□□□□ 0.5
COL28A1-206ENST00000465339 A0A1W2PP64 1363 aa18.17■□□□□ 0.5
COL28A1-206ENST00000465339 RGS12O14924 1447 aa18.17■□□□□ 0.5
COL28A1-206ENST00000465339 CHRNA2Q15822 529 aa18.17■□□□□ 0.5
COL28A1-206ENST00000465339 CCDC9Q9Y3X0 531 aaKnown RBP18.17■□□□□ 0.5
COL28A1-206ENST00000465339 HSPA5P11021 654 aaKnown RBP18.16■□□□□ 0.5
COL28A1-206ENST00000465339 GLI3P10071 1580 aa18.16■□□□□ 0.5
COL28A1-206ENST00000465339 USP31Q70CQ4 1352 aa18.16■□□□□ 0.5
COL28A1-206ENST00000465339 ANKRD36BQ8N2N9 1353 aa18.15■□□□□ 0.5
COL28A1-206ENST00000465339 EVA1CP58658 441 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms