RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	AMOT	Q4VCS5	1084 aa		14.62	□□□□□ -0.07
RBM39-223	ENST00000463004	IL16	Q14005	1332 aa		14.62	□□□□□ -0.07
RBM39-223	ENST00000463004	LRRFIP1	Q32MZ4	808 aa	Known RBP	14.62	□□□□□ -0.07
RBM39-223	ENST00000463004	FAM161A	Q3B820	660 aa		14.62	□□□□□ -0.07
RBM39-223	ENST00000463004	RBM19	Q9Y4C8	960 aa	Known RBP	14.62	□□□□□ -0.07
RBM39-223	ENST00000463004	FKBP5	Q13451	457 aa	Predicted RBP	14.62	□□□□□ -0.07
RBM39-223	ENST00000463004	BCL2L13	Q9BXK5	485 aa		14.62	□□□□□ -0.07
RBM39-223	ENST00000463004	YEATS2	Q9ULM3	1422 aa		14.61	□□□□□ -0.07
RBM39-223	ENST00000463004	UNC13B	O14795	1591 aa		14.61	□□□□□ -0.07
RBM39-223	ENST00000463004	TWISTNB	Q3B726	338 aa	Predicted RBP	14.61	□□□□□ -0.07
RBM39-223	ENST00000463004	NUTM2G	Q5VZR2	741 aa		14.61	□□□□□ -0.07
RBM39-223	ENST00000463004	SPATA31E1	Q6ZUB1	1445 aa		14.61	□□□□□ -0.07
RBM39-223	ENST00000463004	HSP90B1	P14625	803 aa	Known RBP	14.61	□□□□□ -0.07
RBM39-223	ENST00000463004	FGD1	P98174	961 aa		14.61	□□□□□ -0.07
RBM39-223	ENST00000463004	WWC1	Q8IX03	1113 aa		14.61	□□□□□ -0.07
RBM39-223	ENST00000463004	CROCC2	H7BZ55	1655 aa		14.6	□□□□□ -0.07
RBM39-223	ENST00000463004	C9orf78	Q9NZ63	289 aa	Predicted RBP	14.6	□□□□□ -0.07
RBM39-223	ENST00000463004	TMEM2	Q9UHN6	1383 aa		14.6	□□□□□ -0.07
RBM39-223	ENST00000463004	PLIN1	O60240	522 aa		14.6	□□□□□ -0.07
RBM39-223	ENST00000463004	EXOSC9	Q06265	439 aa	Known RBP	14.6	□□□□□ -0.07
RBM39-223	ENST00000463004	TMX4	Q9H1E5	349 aa	Predicted RBP	14.6	□□□□□ -0.07
RBM39-223	ENST00000463004	CHMP4C	Q96CF2	233 aa		14.6	□□□□□ -0.07
RBM39-223	ENST00000463004	IFT57	Q9NWB7	429 aa		14.59	□□□□□ -0.07
RBM39-223	ENST00000463004	PPIP5K1	Q6PFW1	1433 aa		14.59	□□□□□ -0.07
RBM39-223	ENST00000463004	GORAB	Q5T7V8	394 aa		14.59	□□□□□ -0.07
RBM39-223	ENST00000463004	ZNF330	Q9Y3S2	320 aa	Predicted RBP	14.59	□□□□□ -0.07
RBM39-223	ENST00000463004	ACE	P12821	1306 aa		14.59	□□□□□ -0.07
RBM39-223	ENST00000463004	NME9	Q86XW9	330 aa		14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	CDCA7L	Q96GN5	454 aa		14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	MSH6	P52701	1360 aa		14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	EIF2S2	P20042	333 aa	Known RBP	14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	ALDH1L2	Q3SY69	923 aa		14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	ZNF530	Q6P9A1	599 aa	Predicted RBP	14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	PRDM11	Q9NQV5	511 aa		14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	NLRP1	Q9C000	1473 aa		14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	CCDC184	Q52MB2	194 aa		14.58	□□□□□ -0.08
RBM39-223	ENST00000463004	CCT4	P50991	539 aa	Known RBP	14.57	□□□□□ -0.08
RBM39-223	ENST00000463004	NCBP3	Q53F19	620 aa	Known RBP	14.57	□□□□□ -0.08
RBM39-223	ENST00000463004	CCDC27	Q2M243	656 aa		14.56	□□□□□ -0.08
RBM39-223	ENST00000463004	EFCAB6	Q5THR3	1501 aa		14.56	□□□□□ -0.08
RBM39-223	ENST00000463004	GNAT3	A8MTJ3	354 aa		14.56	□□□□□ -0.08
RBM39-223	ENST00000463004	RRS1	Q15050	365 aa	Known RBP	14.56	□□□□□ -0.08
RBM39-223	ENST00000463004	ANKRD45	Q5TZF3	282 aa		14.56	□□□□□ -0.08
RBM39-223	ENST00000463004	APBB1	O00213	710 aa		14.56	□□□□□ -0.08
RBM39-223	ENST00000463004	KDM6B	O15054	1643 aa		14.55	□□□□□ -0.08
RBM39-223	ENST00000463004	ABCC3	O15438	1527 aa		14.55	□□□□□ -0.08
RBM39-223	ENST00000463004	NKTR	P30414	1462 aa	Known RBP	14.55	□□□□□ -0.08
RBM39-223	ENST00000463004	FYB1	O15117	783 aa		14.55	□□□□□ -0.08
RBM39-223	ENST00000463004	CHMP3	Q9Y3E7	222 aa		14.55	□□□□□ -0.08
RBM39-223	ENST00000463004	RUFY2	Q8WXA3	655 aa		14.55	□□□□□ -0.08
RBM39-223	ENST00000463004	GCC1	Q96CN9	775 aa		14.55	□□□□□ -0.08
RBM39-223	ENST00000463004	NPHP3	Q7Z494	1330 aa		14.55	□□□□□ -0.08
RBM39-223	ENST00000463004	ATF7IP	Q6VMQ6	1270 aa		14.54	□□□□□ -0.08
RBM39-223	ENST00000463004	CDC42BPB	Q9Y5S2	1711 aa		14.54	□□□□□ -0.08
RBM39-223	ENST00000463004	C19orf44	Q9H6X5	657 aa		14.54	□□□□□ -0.08
RBM39-223	ENST00000463004	MEX3C	Q5U5Q3	659 aa	Known RBP	14.54	□□□□□ -0.08
RBM39-223	ENST00000463004	ERVK-7	P63135	1459 aa		14.54	□□□□□ -0.08
RBM39-223	ENST00000463004	TRIM6-TRIM34	B2RNG4	842 aa		14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	PER1	O15534	1290 aa	Predicted RBP	14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	KRT28	Q7Z3Y7	464 aa		14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	LMTK2	Q8IWU2	1503 aa		14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	EDC4	Q6P2E9	1401 aa	Known RBP	14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	KIF1B	O60333	1816 aa		14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	REC8	O95072	547 aa		14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	GTF2E1	P29083	439 aa	Predicted RBP	14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	TOM1L2	Q6ZVM7	507 aa		14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	UBTFL1	P0CB47	393 aa	Predicted RBP	14.53	□□□□□ -0.08
RBM39-223	ENST00000463004	PDE4A	P27815	886 aa		14.52	□□□□□ -0.08
RBM39-223	ENST00000463004	HTATSF1	O43719	755 aa	Known RBP	14.52	□□□□□ -0.09
RBM39-223	ENST00000463004	NBR1	Q14596	966 aa		14.52	□□□□□ -0.09
RBM39-223	ENST00000463004	HDGFL1	Q5TGJ6	251 aa		14.52	□□□□□ -0.09
RBM39-223	ENST00000463004	RIC3	Q7Z5B4	369 aa		14.52	□□□□□ -0.09
RBM39-223	ENST00000463004	KCNA6	P17658	529 aa		14.51	□□□□□ -0.09
RBM39-223	ENST00000463004	G3BP1	Q13283	466 aa	Known RBP eCLIP	14.51	□□□□□ -0.09
RBM39-223	ENST00000463004	PLEKHG1	Q9ULL1	1385 aa		14.51	□□□□□ -0.09
RBM39-223	ENST00000463004	IPO9	Q96P70	1041 aa	Known RBP	14.51	□□□□□ -0.09
RBM39-223	ENST00000463004	TSHZ2	Q9NRE2	1034 aa		14.51	□□□□□ -0.09
RBM39-223	ENST00000463004	ST18	O60284	1047 aa		14.51	□□□□□ -0.09
RBM39-223	ENST00000463004	ERC2	O15083	957 aa		14.5	□□□□□ -0.09
RBM39-223	ENST00000463004	MVP	Q14764	893 aa	Known RBP	14.5	□□□□□ -0.09
RBM39-223	ENST00000463004	PRDM15	P57071	1507 aa	Predicted RBP	14.5	□□□□□ -0.09
RBM39-223	ENST00000463004	CABP4	P57796	275 aa		14.5	□□□□□ -0.09
RBM39-223	ENST00000463004	ERC1	Q8IUD2	1116 aa		14.5	□□□□□ -0.09
RBM39-223	ENST00000463004	PANK1	Q8TE04	598 aa		14.5	□□□□□ -0.09
RBM39-223	ENST00000463004	ZRSR1	Q15695	479 aa	Known RBP	14.49	□□□□□ -0.09
RBM39-223	ENST00000463004	GBP4	Q96PP9	640 aa		14.49	□□□□□ -0.09
RBM39-223	ENST00000463004	EMILIN1	Q9Y6C2	1016 aa		14.49	□□□□□ -0.09
RBM39-223	ENST00000463004	PIK3R4	Q99570	1358 aa		14.49	□□□□□ -0.09
RBM39-223	ENST00000463004	FOXO3	O43524	673 aa		14.49	□□□□□ -0.09
RBM39-223	ENST00000463004	GLI2	P10070	1586 aa		14.49	□□□□□ -0.09
RBM39-223	ENST00000463004	MFAP1	P55081	439 aa	Known RBP	14.49	□□□□□ -0.09
RBM39-223	ENST00000463004	TAF7	Q15545	349 aa	Predicted RBP	14.49	□□□□□ -0.09
RBM39-223	ENST00000463004		A0A1W2PP64	1363 aa		14.48	□□□□□ -0.09
RBM39-223	ENST00000463004	FLT4	P35916	1363 aa		14.48	□□□□□ -0.09
RBM39-223	ENST00000463004	GNAI2	P04899	355 aa		14.48	□□□□□ -0.09
RBM39-223	ENST00000463004	IFIT2	P09913	472 aa	Known RBP	14.48	□□□□□ -0.09
RBM39-223	ENST00000463004	KIF3A	Q9Y496	699 aa		14.48	□□□□□ -0.09
RBM39-223	ENST00000463004	TSR2	Q969E8	191 aa	Known RBP	14.48	□□□□□ -0.09
RBM39-223	ENST00000463004	PLEKHG3	A1L390	1219 aa		14.47	□□□□□ -0.09
RBM39-223	ENST00000463004	NOB1	Q9ULX3	412 aa	Known RBP	14.47	□□□□□ -0.09

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