RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 CDCA8Q53HL2 280 aa22.64■■□□□ 1.21
CD28-203ENST00000458610 TOPAZ1Q8N9V7 1692 aa22.64■■□□□ 1.21
CD28-203ENST00000458610 POTEAQ6S8J7 498 aa22.63■■□□□ 1.21
CD28-203ENST00000458610 ABTB2Q8N961 1025 aa22.63■■□□□ 1.21
CD28-203ENST00000458610 CABLES1Q8TDN4 633 aa22.63■■□□□ 1.21
CD28-203ENST00000458610 PLEKHG5O94827 1062 aa22.62■■□□□ 1.21
CD28-203ENST00000458610 FNBP4Q8N3X1 1017 aaPredicted RBP22.62■■□□□ 1.21
CD28-203ENST00000458610 TMC1Q8TDI8 760 aa22.62■■□□□ 1.21
CD28-203ENST00000458610 USP21Q9UK80 565 aa22.61■■□□□ 1.21
CD28-203ENST00000458610 NLRP13Q86W25 1043 aa22.6■■□□□ 1.21
CD28-203ENST00000458610 TERF2IPQ9NYB0 399 aa22.6■■□□□ 1.21
CD28-203ENST00000458610 EIF4G2P78344 907 aaKnown RBP eCLIP22.59■■□□□ 1.21
CD28-203ENST00000458610 HDGFL2Q7Z4V5 671 aaPredicted RBP22.59■■□□□ 1.21
CD28-203ENST00000458610 QTRT2Q9H974 415 aaKnown RBP22.59■■□□□ 1.21
CD28-203ENST00000458610 TRPM3Q9HCF6 1732 aaPredicted RBP22.59■■□□□ 1.21
CD28-203ENST00000458610 USP6P35125 1406 aa22.58■■□□□ 1.21
CD28-203ENST00000458610 RXRBP28702 533 aa22.58■■□□□ 1.21
CD28-203ENST00000458610 TRPC5Q9UL62 973 aaPredicted RBP22.57■■□□□ 1.2
CD28-203ENST00000458610 NINLQ9Y2I6 1382 aa22.57■■□□□ 1.2
CD28-203ENST00000458610 KTN1Q86UP2 1357 aaKnown RBP22.55■■□□□ 1.2
CD28-203ENST00000458610 RBM6P78332 1123 aaKnown RBP22.55■■□□□ 1.2
CD28-203ENST00000458610 NUTM2GQ5VZR2 741 aa22.55■■□□□ 1.2
CD28-203ENST00000458610 SLC12A5Q9H2X9 1139 aa22.55■■□□□ 1.2
CD28-203ENST00000458610 ALS2Q96Q42 1657 aa22.55■■□□□ 1.2
CD28-203ENST00000458610 TTC21AQ8NDW8 1320 aa22.55■■□□□ 1.2
CD28-203ENST00000458610 NLRP6P59044 892 aa22.54■■□□□ 1.2
CD28-203ENST00000458610 CPSF1Q10570 1443 aaKnown RBP22.54■■□□□ 1.2
CD28-203ENST00000458610 SOCS7O14512 581 aa22.53■■□□□ 1.2
CD28-203ENST00000458610 UNC5CLQ8IV45 518 aa22.53■■□□□ 1.2
CD28-203ENST00000458610 TTC21BQ7Z4L5 1316 aa22.53■■□□□ 1.2
CD28-203ENST00000458610 FAM83GA6ND36 823 aa22.51■■□□□ 1.19
CD28-203ENST00000458610 PRDM11Q9NQV5 511 aa22.51■■□□□ 1.19
CD28-203ENST00000458610 SSH2Q76I76 1423 aa22.5■■□□□ 1.19
CD28-203ENST00000458610 USP19O94966 1318 aa22.49■■□□□ 1.19
CD28-203ENST00000458610 GCP02774 474 aa22.48■■□□□ 1.19
CD28-203ENST00000458610 HSPA5P11021 654 aaKnown RBP22.48■■□□□ 1.19
CD28-203ENST00000458610 MARF1Q9Y4F3 1742 aaKnown RBP22.48■■□□□ 1.19
CD28-203ENST00000458610 BCL9LQ86UU0 1499 aa22.47■■□□□ 1.19
CD28-203ENST00000458610 SLIT2O94813 1529 aa22.47■■□□□ 1.19
CD28-203ENST00000458610 KCNH5Q8NCM2 988 aa22.47■■□□□ 1.19
CD28-203ENST00000458610 ZC3H6P61129 1189 aaKnown RBP22.46■■□□□ 1.19
CD28-203ENST00000458610 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.46■■□□□ 1.19
CD28-203ENST00000458610 GJD4Q96KN9 370 aaPredicted RBP22.45■■□□□ 1.18
CD28-203ENST00000458610 BTG4Q9NY30 223 aa22.45■■□□□ 1.18
CD28-203ENST00000458610 ATRNO75882 1429 aa22.45■■□□□ 1.18
CD28-203ENST00000458610 VPS72Q15906 364 aa22.44■■□□□ 1.18
CD28-203ENST00000458610 EDC4Q6P2E9 1401 aaKnown RBP22.44■■□□□ 1.18
CD28-203ENST00000458610 KIAA0232Q92628 1395 aa22.44■■□□□ 1.18
CD28-203ENST00000458610 CDK12Q9NYV4 1490 aaPredicted RBP22.44■■□□□ 1.18
CD28-203ENST00000458610 A0A1W2PP64 1363 aa22.43■■□□□ 1.18
CD28-203ENST00000458610 CCDC9Q9Y3X0 531 aaKnown RBP22.43■■□□□ 1.18
CD28-203ENST00000458610 AKAP12Q02952 1782 aa22.43■■□□□ 1.18
CD28-203ENST00000458610 CD163L1Q9NR16 1453 aa22.42■■□□□ 1.18
CD28-203ENST00000458610 CPDO75976 1380 aa22.42■■□□□ 1.18
CD28-203ENST00000458610 ANKRD36BQ8N2N9 1353 aa22.42■■□□□ 1.18
CD28-203ENST00000458610 ABCA3Q99758 1704 aa22.42■■□□□ 1.18
CD28-203ENST00000458610 USP31Q70CQ4 1352 aa22.4■■□□□ 1.18
CD28-203ENST00000458610 EVA1CP58658 441 aa22.4■■□□□ 1.18
CD28-203ENST00000458610 CHRNA2Q15822 529 aa22.4■■□□□ 1.18
CD28-203ENST00000458610 COL14A1Q05707 1796 aaKnown RBP22.39■■□□□ 1.17
CD28-203ENST00000458610 NME9Q86XW9 330 aa22.38■■□□□ 1.17
CD28-203ENST00000458610 POLR3GLQ9BT43 218 aa22.38■■□□□ 1.17
CD28-203ENST00000458610 NWD2Q9ULI1 1742 aa22.37■■□□□ 1.17
CD28-203ENST00000458610 CRYBG1Q9Y4K1 1723 aa22.37■■□□□ 1.17
CD28-203ENST00000458610 MON2Q7Z3U7 1717 aa22.37■■□□□ 1.17
CD28-203ENST00000458610 PHRF1Q9P1Y6 1649 aaKnown RBP22.36■■□□□ 1.17
CD28-203ENST00000458610 ZBTB7CA1YPR0 619 aa22.36■■□□□ 1.17
CD28-203ENST00000458610 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.36■■□□□ 1.17
CD28-203ENST00000458610 COG3Q96JB2 828 aa22.35■■□□□ 1.17
CD28-203ENST00000458610 SLIT3O75094 1523 aa22.35■■□□□ 1.17
CD28-203ENST00000458610 PIK3C2AO00443 1686 aa22.34■■□□□ 1.17
CD28-203ENST00000458610 STRN4Q9NRL3 753 aa22.34■■□□□ 1.17
CD28-203ENST00000458610 AATKQ6ZMQ8 1374 aa22.34■■□□□ 1.17
CD28-203ENST00000458610 NRKQ7Z2Y5 1582 aa22.33■■□□□ 1.17
CD28-203ENST00000458610 PLCH1Q4KWH8 1693 aa22.33■■□□□ 1.17
CD28-203ENST00000458610 SOX12O15370 315 aa22.33■■□□□ 1.17
CD28-203ENST00000458610 ARHGEF25Q86VW2 580 aa22.33■■□□□ 1.17
CD28-203ENST00000458610 ZRANB1Q9UGI0 708 aa22.32■■□□□ 1.16
CD28-203ENST00000458610 ONECUT3O60422 494 aaPredicted RBP22.31■■□□□ 1.16
CD28-203ENST00000458610 RGS12O14924 1447 aa22.31■■□□□ 1.16
CD28-203ENST00000458610 SPATA31A5Q5VU36 1347 aa22.31■■□□□ 1.16
CD28-203ENST00000458610 SPATA31A7Q8IWB4 1347 aa22.31■■□□□ 1.16
CD28-203ENST00000458610 FYB1O15117 783 aa22.28■■□□□ 1.16
CD28-203ENST00000458610 A0A0G2JS52 829 aa22.27■■□□□ 1.16
CD28-203ENST00000458610 MYT1Q01538 1121 aa22.27■■□□□ 1.16
CD28-203ENST00000458610 SEPT12Q8IYM1 358 aa22.27■■□□□ 1.16
CD28-203ENST00000458610 CARD14Q9BXL6 1004 aa22.27■■□□□ 1.16
CD28-203ENST00000458610 SPATA31A1Q5TZJ5 1347 aa22.27■■□□□ 1.16
CD28-203ENST00000458610 CAMTA1Q9Y6Y1 1673 aa22.26■■□□□ 1.15
CD28-203ENST00000458610 OVOS2A0A0J9YW53 1432 aa22.25■■□□□ 1.15
CD28-203ENST00000458610 OVOS2Q6IE36 1432 aa22.25■■□□□ 1.15
CD28-203ENST00000458610 FAM98CQ17RN3 349 aaKnown RBP22.25■■□□□ 1.15
CD28-203ENST00000458610 LARP1Q6PKG0 1096 aaKnown RBP22.25■■□□□ 1.15
CD28-203ENST00000458610 THRAP3Q9Y2W1 955 aaKnown RBP22.25■■□□□ 1.15
CD28-203ENST00000458610 CGNL1Q0VF96 1302 aa22.25■■□□□ 1.15
CD28-203ENST00000458610 NRAPQ86VF7 1730 aa22.24■■□□□ 1.15
CD28-203ENST00000458610 CSB-PGBD3P0DP91 1061 aa22.24■■□□□ 1.15
CD28-203ENST00000458610 TCP11L2Q8N4U5 519 aa22.24■■□□□ 1.15
CD28-203ENST00000458610 GGNBP2Q9H3C7 697 aa22.24■■□□□ 1.15
CD28-203ENST00000458610 GLI3P10071 1580 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms