RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CDC42BPGQ6DT37 1551 aa19.5■□□□□ 0.71
LDLR-202ENST00000455727 TNRQ92752 1358 aa19.5■□□□□ 0.71
LDLR-202ENST00000455727 METP08581 1390 aa19.49■□□□□ 0.71
LDLR-202ENST00000455727 CT47B1P0C2W7 299 aaPredicted RBP19.49■□□□□ 0.71
LDLR-202ENST00000455727 WASLO00401 505 aaPredicted RBP19.48■□□□□ 0.71
LDLR-202ENST00000455727 CPSF1Q10570 1443 aaKnown RBP19.48■□□□□ 0.71
LDLR-202ENST00000455727 UBR1Q8IWV7 1749 aa19.48■□□□□ 0.71
LDLR-202ENST00000455727 U2SURPO15042 1029 aaKnown RBP19.48■□□□□ 0.71
LDLR-202ENST00000455727 DIAPH1O60610 1272 aaKnown RBP19.48■□□□□ 0.71
LDLR-202ENST00000455727 TMPOP42166 694 aaKnown RBP19.47■□□□□ 0.71
LDLR-202ENST00000455727 CPS1P31327 1500 aa19.47■□□□□ 0.71
LDLR-202ENST00000455727 CANXP27824 592 aaKnown RBP19.47■□□□□ 0.71
LDLR-202ENST00000455727 EDC4Q6P2E9 1401 aaKnown RBP19.46■□□□□ 0.71
LDLR-202ENST00000455727 IL16Q14005 1332 aa19.46■□□□□ 0.71
LDLR-202ENST00000455727 MAPK8IP3Q9UPT6 1336 aa19.46■□□□□ 0.71
LDLR-202ENST00000455727 MAP2P11137 1827 aaKnown RBP19.45■□□□□ 0.7
LDLR-202ENST00000455727 TMEM2Q9UHN6 1383 aa19.45■□□□□ 0.7
LDLR-202ENST00000455727 CLUAP1Q96AJ1 413 aa19.45■□□□□ 0.7
LDLR-202ENST00000455727 ZBTB47Q9UFB7 747 aaPredicted RBP19.45■□□□□ 0.7
LDLR-202ENST00000455727 TRIM35Q9UPQ4 493 aa19.44■□□□□ 0.7
LDLR-202ENST00000455727 PPIP5K1Q6PFW1 1433 aa19.44■□□□□ 0.7
LDLR-202ENST00000455727 MON2Q7Z3U7 1717 aa19.43■□□□□ 0.7
LDLR-202ENST00000455727 FCHSD2O94868 740 aa19.43■□□□□ 0.7
LDLR-202ENST00000455727 SKAP1Q86WV1 359 aa19.43■□□□□ 0.7
LDLR-202ENST00000455727 PANK1Q8TE04 598 aa19.43■□□□□ 0.7
LDLR-202ENST00000455727 POLKQ9UBT6 870 aa19.42■□□□□ 0.7
LDLR-202ENST00000455727 PAK3O75914 559 aaPredicted RBP19.42■□□□□ 0.7
LDLR-202ENST00000455727 TXNDC2Q86VQ3 553 aa19.42■□□□□ 0.7
LDLR-202ENST00000455727 FRAT1Q92837 279 aaPredicted RBP19.42■□□□□ 0.7
LDLR-202ENST00000455727 COG6Q9Y2V7 657 aa19.42■□□□□ 0.7
LDLR-202ENST00000455727 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.41■□□□□ 0.7
LDLR-202ENST00000455727 CCDC61Q9Y6R9 512 aa19.41■□□□□ 0.7
LDLR-202ENST00000455727 AKAP12Q02952 1782 aa19.41■□□□□ 0.7
LDLR-202ENST00000455727 NUDT16Q96DE0 195 aaKnown RBP19.4■□□□□ 0.7
LDLR-202ENST00000455727 AATKQ6ZMQ8 1374 aa19.4■□□□□ 0.7
LDLR-202ENST00000455727 FAM161AQ3B820 660 aa19.39■□□□□ 0.69
LDLR-202ENST00000455727 IGHDP01880 384 aa19.39■□□□□ 0.69
LDLR-202ENST00000455727 ITSN1Q15811 1721 aa19.38■□□□□ 0.69
LDLR-202ENST00000455727 LRRC7Q96NW7 1537 aa19.38■□□□□ 0.69
LDLR-202ENST00000455727 RIPK4P57078 832 aa19.38■□□□□ 0.69
LDLR-202ENST00000455727 ADAMTS13Q76LX8 1427 aa19.38■□□□□ 0.69
LDLR-202ENST00000455727 NPM2Q86SE8 214 aaKnown RBP19.37■□□□□ 0.69
LDLR-202ENST00000455727 PMFBP1Q8TBY8 1022 aa19.37■□□□□ 0.69
LDLR-202ENST00000455727 ZNF692Q9BU19 519 aaPredicted RBP19.37■□□□□ 0.69
LDLR-202ENST00000455727 RSPH6AQ9H0K4 717 aa19.37■□□□□ 0.69
LDLR-202ENST00000455727 PLEKHG1Q9ULL1 1385 aa19.37■□□□□ 0.69
LDLR-202ENST00000455727 CDK12Q9NYV4 1490 aaPredicted RBP19.37■□□□□ 0.69
LDLR-202ENST00000455727 C3P01024 1663 aa19.37■□□□□ 0.69
LDLR-202ENST00000455727 RLBP1P12271 317 aa19.36■□□□□ 0.69
LDLR-202ENST00000455727 EXOSC9Q06265 439 aaKnown RBP19.35■□□□□ 0.69
LDLR-202ENST00000455727 ZKSCAN2Q63HK3 967 aa19.35■□□□□ 0.69
LDLR-202ENST00000455727 TSR2Q969E8 191 aaKnown RBP19.35■□□□□ 0.69
LDLR-202ENST00000455727 C8orf34Q49A92 452 aa19.35■□□□□ 0.69
LDLR-202ENST00000455727 NEFMP07197 916 aa19.34■□□□□ 0.69
LDLR-202ENST00000455727 BCL2L13Q9BXK5 485 aa19.34■□□□□ 0.69
LDLR-202ENST00000455727 NME9Q86XW9 330 aa19.34■□□□□ 0.69
LDLR-202ENST00000455727 ROBO2Q9HCK4 1378 aa19.33■□□□□ 0.69
LDLR-202ENST00000455727 VIRMAQ69YN4 1812 aaKnown RBP19.33■□□□□ 0.68
LDLR-202ENST00000455727 MVPQ14764 893 aaKnown RBP19.33■□□□□ 0.68
LDLR-202ENST00000455727 DDRGK1Q96HY6 314 aa19.33■□□□□ 0.68
LDLR-202ENST00000455727 COG3Q96JB2 828 aa19.33■□□□□ 0.68
LDLR-202ENST00000455727 PRKAR2BP31323 418 aa19.32■□□□□ 0.68
LDLR-202ENST00000455727 IL13P35225 146 aa19.32■□□□□ 0.68
LDLR-202ENST00000455727 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.32■□□□□ 0.68
LDLR-202ENST00000455727 PPM1GO15355 546 aaPredicted RBP19.31■□□□□ 0.68
LDLR-202ENST00000455727 RGS3P49796 1198 aa19.31■□□□□ 0.68
LDLR-202ENST00000455727 TOPAZ1Q8N9V7 1692 aa19.31■□□□□ 0.68
LDLR-202ENST00000455727 FBLN1P23142 703 aa19.31■□□□□ 0.68
LDLR-202ENST00000455727 DZIP1LQ8IYY4 767 aaKnown RBP19.31■□□□□ 0.68
LDLR-202ENST00000455727 TNNQ9UQP3 1299 aa19.31■□□□□ 0.68
LDLR-202ENST00000455727 PRR36Q9H6K5 1346 aa19.31■□□□□ 0.68
LDLR-202ENST00000455727 SMC4Q9NTJ3 1288 aa19.3■□□□□ 0.68
LDLR-202ENST00000455727 PCDHB15Q9Y5E8 787 aa19.3■□□□□ 0.68
LDLR-202ENST00000455727 LTKP29376 864 aa19.3■□□□□ 0.68
LDLR-202ENST00000455727 NFE2L2Q16236 605 aa19.3■□□□□ 0.68
LDLR-202ENST00000455727 EMILIN1Q9Y6C2 1016 aa19.3■□□□□ 0.68
LDLR-202ENST00000455727 SLIT1O75093 1534 aa19.29■□□□□ 0.68
LDLR-202ENST00000455727 SSH1Q8WYL5 1049 aa19.29■□□□□ 0.68
LDLR-202ENST00000455727 ZNF428Q96B54 188 aa19.29■□□□□ 0.68
LDLR-202ENST00000455727 CALD1Q05682 793 aaKnown RBP19.29■□□□□ 0.68
LDLR-202ENST00000455727 NRKQ7Z2Y5 1582 aa19.28■□□□□ 0.68
LDLR-202ENST00000455727 NCKAP5LQ9HCH0 1330 aa19.28■□□□□ 0.68
LDLR-202ENST00000455727 ALDH1L2Q3SY69 923 aa19.28■□□□□ 0.68
LDLR-202ENST00000455727 FTSJ3Q8IY81 847 aaKnown RBP19.28■□□□□ 0.68
LDLR-202ENST00000455727 RWDD1Q9H446 243 aaPredicted RBP19.28■□□□□ 0.68
LDLR-202ENST00000455727 ARHGAP23Q9P227 1491 aa19.28■□□□□ 0.68
LDLR-202ENST00000455727 PLEKHG3A1L390 1219 aa19.28■□□□□ 0.68
LDLR-202ENST00000455727 ZRANB1Q9UGI0 708 aa19.28■□□□□ 0.68
LDLR-202ENST00000455727 ATF7IPQ6VMQ6 1270 aa19.27■□□□□ 0.68
LDLR-202ENST00000455727 EID1Q9Y6B2 187 aa19.26■□□□□ 0.67
LDLR-202ENST00000455727 KIF16BQ96L93 1317 aa19.26■□□□□ 0.67
LDLR-202ENST00000455727 TRIM27P14373 513 aa19.26■□□□□ 0.67
LDLR-202ENST00000455727 BRPF1P55201 1214 aaPredicted RBP19.26■□□□□ 0.67
LDLR-202ENST00000455727 PHACTR3Q96KR7 559 aa19.26■□□□□ 0.67
LDLR-202ENST00000455727 IPO8O15397 1037 aaKnown RBP19.25■□□□□ 0.67
LDLR-202ENST00000455727 DDX19BQ9UMR2 479 aa19.25■□□□□ 0.67
LDLR-202ENST00000455727 HMOX1P09601 288 aa19.24■□□□□ 0.67
LDLR-202ENST00000455727 DLG5Q8TDM6 1919 aa19.24■□□□□ 0.67
LDLR-202ENST00000455727 PTPRUQ92729 1446 aa19.24■□□□□ 0.67
LDLR-202ENST00000455727 TBX22Q9Y458 520 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms