RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 ANKRD45Q5TZF3 282 aa15.16■□□□□ 0.02
SMPD4-213ENST00000454468 PPRC1Q5VV67 1664 aaKnown RBP15.16■□□□□ 0.02
SMPD4-213ENST00000454468 NPC1L1Q9UHC9 1359 aa15.16■□□□□ 0.02
SMPD4-213ENST00000454468 WASLO00401 505 aaPredicted RBP15.15■□□□□ 0.02
SMPD4-213ENST00000454468 AMPHP49418 695 aa15.15■□□□□ 0.02
SMPD4-213ENST00000454468 POLKQ9UBT6 870 aa15.15■□□□□ 0.02
SMPD4-213ENST00000454468 KIDINS220Q9ULH0 1771 aa15.15■□□□□ 0.02
SMPD4-213ENST00000454468 MVPQ14764 893 aaKnown RBP15.15■□□□□ 0.02
SMPD4-213ENST00000454468 CCDC61Q9Y6R9 512 aa15.15■□□□□ 0.02
SMPD4-213ENST00000454468 MLH3Q9UHC1 1453 aa15.15■□□□□ 0.02
SMPD4-213ENST00000454468 BECN1Q14457 450 aa15.15■□□□□ 0.02
SMPD4-213ENST00000454468 TSPOAP1O95153 1857 aa15.15■□□□□ 0.02
SMPD4-213ENST00000454468 YTHDC2Q9H6S0 1430 aaKnown RBP15.14■□□□□ 0.01
SMPD4-213ENST00000454468 INO80Q9ULG1 1556 aaPredicted RBP15.14■□□□□ 0.01
SMPD4-213ENST00000454468 SYNMO15061 1565 aa15.14■□□□□ 0.01
SMPD4-213ENST00000454468 ATF7IPQ6VMQ6 1270 aa15.14■□□□□ 0.01
SMPD4-213ENST00000454468 FOXD4L1Q9NU39 408 aa15.14■□□□□ 0.01
SMPD4-213ENST00000454468 KDM2BQ8NHM5 1336 aa15.13■□□□□ 0.01
SMPD4-213ENST00000454468 C8orf34Q49A92 452 aa15.13■□□□□ 0.01
SMPD4-213ENST00000454468 MYOM2P54296 1465 aa15.13■□□□□ 0.01
SMPD4-213ENST00000454468 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.13■□□□□ 0.01
SMPD4-213ENST00000454468 ABCC3O15438 1527 aa15.13■□□□□ 0.01
SMPD4-213ENST00000454468 ARAP3Q8WWN8 1544 aa15.13■□□□□ 0.01
SMPD4-213ENST00000454468 MCM10Q7L590 875 aa15.13■□□□□ 0.01
SMPD4-213ENST00000454468 AEBP1Q8IUX7 1158 aa15.13■□□□□ 0.01
SMPD4-213ENST00000454468 TRMT2AQ8IZ69 625 aaKnown RBP15.13■□□□□ 0.01
SMPD4-213ENST00000454468 DDX19BQ9UMR2 479 aa15.13■□□□□ 0.01
SMPD4-213ENST00000454468 RTF1Q92541 710 aaKnown RBP15.12■□□□□ 0.01
SMPD4-213ENST00000454468 TRIM35Q9UPQ4 493 aa15.12■□□□□ 0.01
SMPD4-213ENST00000454468 TSPYL6Q8N831 410 aa15.11■□□□□ 0.01
SMPD4-213ENST00000454468 KRT24Q2M2I5 525 aa15.11■□□□□ 0.01
SMPD4-213ENST00000454468 FCHSD2O94868 740 aa15.1■□□□□ 0.01
SMPD4-213ENST00000454468 HECW2Q9P2P5 1572 aa15.1■□□□□ 0.01
SMPD4-213ENST00000454468 TWISTNBQ3B726 338 aaPredicted RBP15.1■□□□□ 0.01
SMPD4-213ENST00000454468 RIMS2Q9UQ26 1411 aa15.1■□□□□ 0.01
SMPD4-213ENST00000454468 NLRP6P59044 892 aa15.09■□□□□ 0.01
SMPD4-213ENST00000454468 NFKBIBQ15653 356 aa15.09■□□□□ 0.01
SMPD4-213ENST00000454468 ZNF428Q96B54 188 aa15.09■□□□□ 0.01
SMPD4-213ENST00000454468 SBNO2Q9Y2G9 1366 aa15.09■□□□□ 0.01
SMPD4-213ENST00000454468 FRAT2O75474 233 aaPredicted RBP15.09■□□□□ 0.01
SMPD4-213ENST00000454468 HSP90AB2PQ58FF8 381 aa15.09■□□□□ 0.01
SMPD4-213ENST00000454468 GZF1Q9H116 711 aaPredicted RBP15.08■□□□□ 0.01
SMPD4-213ENST00000454468 NFE2L2Q16236 605 aa15.08■□□□□ 0
SMPD4-213ENST00000454468 NEO1Q92859 1461 aa15.08■□□□□ 0
SMPD4-213ENST00000454468 GNAI1P63096 354 aa15.07■□□□□ 0
SMPD4-213ENST00000454468 CALD1Q05682 793 aaKnown RBP15.07■□□□□ 0
SMPD4-213ENST00000454468 ZMYM3Q14202 1370 aa15.07■□□□□ 0
SMPD4-213ENST00000454468 IQGAP1P46940 1657 aa15.06■□□□□ 0
SMPD4-213ENST00000454468 MROH2AA6NES4 1674 aa15.06■□□□□ 0
SMPD4-213ENST00000454468 XPCQ01831 940 aaPredicted RBP15.06■□□□□ 0
SMPD4-213ENST00000454468 AMOTL2Q9Y2J4 779 aa15.06■□□□□ 0
SMPD4-213ENST00000454468 METP08581 1390 aa15.06■□□□□ 0
SMPD4-213ENST00000454468 ACEP12821 1306 aa15.06■□□□□ 0
SMPD4-213ENST00000454468 KIF16BQ96L93 1317 aa15.06■□□□□ 0
SMPD4-213ENST00000454468 PPIP5K1Q6PFW1 1433 aa15.05■□□□□ 0
SMPD4-213ENST00000454468 MBIPQ9NS73 344 aa15.05■□□□□ -0
SMPD4-213ENST00000454468 MROH1Q8NDA8 1641 aa15.05■□□□□ -0
SMPD4-213ENST00000454468 INSRP06213 1382 aa15.05■□□□□ -0
SMPD4-213ENST00000454468 ADGRB3O60242 1522 aa15.04■□□□□ -0
SMPD4-213ENST00000454468 LAMC1P11047 1609 aa15.04■□□□□ -0
SMPD4-213ENST00000454468 C8orf58Q8NAV2 365 aa15.04■□□□□ -0
SMPD4-213ENST00000454468 ABCC11Q96J66 1382 aa15.04■□□□□ -0
SMPD4-213ENST00000454468 LTKP29376 864 aa15.03■□□□□ -0
SMPD4-213ENST00000454468 NSD2O96028 1365 aa15.03■□□□□ -0
SMPD4-213ENST00000454468 FOXO3O43524 673 aa15.03■□□□□ -0
SMPD4-213ENST00000454468 USHBP1Q8N6Y0 703 aa15.03■□□□□ -0
SMPD4-213ENST00000454468 PLEKHF1Q96S99 279 aa15.03■□□□□ -0
SMPD4-213ENST00000454468 RSPH6AQ9H0K4 717 aa15.03■□□□□ -0
SMPD4-213ENST00000454468 LMOD3Q0VAK6 560 aa15.03■□□□□ -0
SMPD4-213ENST00000454468 CCDC27Q2M243 656 aa15.03■□□□□ -0
SMPD4-213ENST00000454468 ABTB2Q8N961 1025 aa15.02■□□□□ -0
SMPD4-213ENST00000454468 FRMPD1Q5SYB0 1578 aa15.02■□□□□ -0
SMPD4-213ENST00000454468 TSPYL4Q9UJ04 414 aa15.02□□□□□ -0.01
SMPD4-213ENST00000454468 TPRNQ4KMQ1 711 aa15.01□□□□□ -0.01
SMPD4-213ENST00000454468 EIF2S2P20042 333 aaKnown RBP15.01□□□□□ -0.01
SMPD4-213ENST00000454468 C22orf23Q9BZE7 217 aa15.01□□□□□ -0.01
SMPD4-213ENST00000454468 VWDEQ8N2E2 1590 aa15.01□□□□□ -0.01
SMPD4-213ENST00000454468 GLI2P10070 1586 aa15□□□□□ -0.01
SMPD4-213ENST00000454468 HSP90AB1P08238 724 aaKnown RBP15□□□□□ -0.01
SMPD4-213ENST00000454468 UBE2Q2Q8WVN8 375 aa15□□□□□ -0.01
SMPD4-213ENST00000454468 TNRQ92752 1358 aa15□□□□□ -0.01
SMPD4-213ENST00000454468 SLC4A2P04920 1241 aa15□□□□□ -0.01
SMPD4-213ENST00000454468 ZNF692Q9BU19 519 aaPredicted RBP15□□□□□ -0.01
SMPD4-213ENST00000454468 DEPDC5O75140 1603 aa15□□□□□ -0.01
SMPD4-213ENST00000454468 TULP4Q9NRJ4 1543 aa15□□□□□ -0.01
SMPD4-213ENST00000454468 HSCBQ8IWL3 235 aa14.99□□□□□ -0.01
SMPD4-213ENST00000454468 IL27Q8NEV9 243 aa14.99□□□□□ -0.01
SMPD4-213ENST00000454468 F6X3S4 739 aa14.99□□□□□ -0.01
SMPD4-213ENST00000454468 EIF4A2Q14240 407 aaKnown RBP14.99□□□□□ -0.01
SMPD4-213ENST00000454468 PUS7Q96PZ0 661 aaKnown RBP14.99□□□□□ -0.01
SMPD4-213ENST00000454468 QRICH2Q9H0J4 1663 aa14.99□□□□□ -0.01
SMPD4-213ENST00000454468 VAMP4O75379 141 aa14.97□□□□□ -0.01
SMPD4-213ENST00000454468 IL13P35225 146 aa14.97□□□□□ -0.01
SMPD4-213ENST00000454468 STK31Q9BXU1 1019 aa14.97□□□□□ -0.01
SMPD4-213ENST00000454468 TTC21BQ7Z4L5 1316 aa14.97□□□□□ -0.01
SMPD4-213ENST00000454468 DIP2CQ9Y2E4 1556 aa14.97□□□□□ -0.01
SMPD4-213ENST00000454468 ADGRB1O14514 1584 aa14.96□□□□□ -0.01
SMPD4-213ENST00000454468 FKBP5Q13451 457 aaPredicted RBP14.96□□□□□ -0.01
SMPD4-213ENST00000454468 ESCO1Q5FWF5 840 aa14.96□□□□□ -0.01
SMPD4-213ENST00000454468 SMARCA5O60264 1052 aaPredicted RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms