RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 EVA1BQ9NVM1 165 aa9.52□□□□□ -0.89
VPS29-202ENST00000447578 UNC93B1Q9H1C4 597 aa9.51□□□□□ -0.89
VPS29-202ENST00000447578 H3BM21 787 aa9.5□□□□□ -0.89
VPS29-202ENST00000447578 RSBN1LQ6PCB5 846 aaPredicted RBP9.5□□□□□ -0.89
VPS29-202ENST00000447578 TMEM151AQ8N4L1 468 aa9.5□□□□□ -0.89
VPS29-202ENST00000447578 BAP1Q92560 729 aa9.5□□□□□ -0.89
VPS29-202ENST00000447578 AK7Q96M32 723 aa9.5□□□□□ -0.89
VPS29-202ENST00000447578 KCNH2Q12809 1159 aa9.49□□□□□ -0.89
VPS29-202ENST00000447578 SPDYE5A6NIY4 337 aa9.48□□□□□ -0.89
VPS29-202ENST00000447578 GSK3AP49840 483 aa9.48□□□□□ -0.89
VPS29-202ENST00000447578 CFAP99D6REC4 459 aa9.47□□□□□ -0.89
VPS29-202ENST00000447578 ERBB4Q15303 1308 aa9.47□□□□□ -0.89
VPS29-202ENST00000447578 SPTLC1O15269 473 aa9.46□□□□□ -0.9
VPS29-202ENST00000447578 HRCP23327 699 aa9.46□□□□□ -0.9
VPS29-202ENST00000447578 VEGFBP49765 207 aa9.46□□□□□ -0.9
VPS29-202ENST00000447578 CSPP1Q1MSJ5 1256 aa9.46□□□□□ -0.9
VPS29-202ENST00000447578 DESI1Q6ICB0 168 aa9.46□□□□□ -0.9
VPS29-202ENST00000447578 CABLES1Q8TDN4 633 aa9.46□□□□□ -0.9
VPS29-202ENST00000447578 CTHP32929 405 aa9.45□□□□□ -0.9
VPS29-202ENST00000447578 GJA5P36382 358 aa9.45□□□□□ -0.9
VPS29-202ENST00000447578 DIXDC1Q155Q3 683 aa9.45□□□□□ -0.9
VPS29-202ENST00000447578 XP32Q5T750 250 aa9.45□□□□□ -0.9
VPS29-202ENST00000447578 RIC3Q7Z5B4 369 aa9.45□□□□□ -0.9
VPS29-202ENST00000447578 TLL2Q9Y6L7 1015 aa9.45□□□□□ -0.9
VPS29-202ENST00000447578 WASF2Q9Y6W5 498 aa9.45□□□□□ -0.9
VPS29-202ENST00000447578 GDF11O95390 407 aa9.44□□□□□ -0.9
VPS29-202ENST00000447578 PDE4DQ08499 809 aa9.44□□□□□ -0.9
VPS29-202ENST00000447578 LYPD8Q6UX82 237 aa9.44□□□□□ -0.9
VPS29-202ENST00000447578 ZNF511Q8NB15 262 aa9.44□□□□□ -0.9
VPS29-202ENST00000447578 SLC24A3Q9HC58 644 aa9.44□□□□□ -0.9
VPS29-202ENST00000447578 BMP1P13497 986 aa9.43□□□□□ -0.9
VPS29-202ENST00000447578 ZBTB3Q9H5J0 574 aa9.43□□□□□ -0.9
VPS29-202ENST00000447578 MAP10Q9P2G4 905 aa9.42□□□□□ -0.9
VPS29-202ENST00000447578 LIMD1Q9UGP4 676 aa9.42□□□□□ -0.9
VPS29-202ENST00000447578 CAPN5O15484 640 aaPredicted RBP9.41□□□□□ -0.9
VPS29-202ENST00000447578 PER1O15534 1290 aaPredicted RBP9.41□□□□□ -0.9
VPS29-202ENST00000447578 RASSF7Q02833 373 aa9.41□□□□□ -0.9
VPS29-202ENST00000447578 QPCTQ16769 361 aa9.4□□□□□ -0.9
VPS29-202ENST00000447578 MYSM1Q5VVJ2 828 aa9.4□□□□□ -0.9
VPS29-202ENST00000447578 TRIM46Q7Z4K8 759 aa9.4□□□□□ -0.9
VPS29-202ENST00000447578 VARSP26640 1264 aaKnown RBP9.39□□□□□ -0.91
VPS29-202ENST00000447578 PRPF38BQ5VTL8 546 aaKnown RBP9.39□□□□□ -0.91
VPS29-202ENST00000447578 TSC1Q92574 1164 aa9.39□□□□□ -0.91
VPS29-202ENST00000447578 FOXJ1Q92949 421 aa9.39□□□□□ -0.91
VPS29-202ENST00000447578 F12P00748 615 aaPredicted RBP9.38□□□□□ -0.91
VPS29-202ENST00000447578 KRTAP4-8Q9BYQ9 185 aa9.38□□□□□ -0.91
VPS29-202ENST00000447578 NUTM2BA6NNL0 878 aaPredicted RBP9.37□□□□□ -0.91
VPS29-202ENST00000447578 NUTM2EB1AL46 878 aaPredicted RBP9.37□□□□□ -0.91
VPS29-202ENST00000447578 RNF225M0QZC1 329 aaPredicted RBP9.37□□□□□ -0.91
VPS29-202ENST00000447578 NUTM2DQ5VT03 806 aaPredicted RBP9.37□□□□□ -0.91
VPS29-202ENST00000447578 NUTM2AQ8IVF1 878 aaPredicted RBP9.37□□□□□ -0.91
VPS29-202ENST00000447578 NNTQ13423 1086 aa9.36□□□□□ -0.91
VPS29-202ENST00000447578 PLEKHG3A1L390 1219 aa9.35□□□□□ -0.91
VPS29-202ENST00000447578 LILRB3O75022 631 aa9.35□□□□□ -0.91
VPS29-202ENST00000447578 RTL5Q5HYW3 569 aaPredicted RBP9.35□□□□□ -0.91
VPS29-202ENST00000447578 IGHA1P01876 353 aa9.34□□□□□ -0.91
VPS29-202ENST00000447578 ARID5BQ14865 1188 aa9.34□□□□□ -0.91
VPS29-202ENST00000447578 C4orf48Q5BLP8 95 aa9.34□□□□□ -0.91
VPS29-202ENST00000447578 MPNDQ8N594 471 aa9.33□□□□□ -0.92
VPS29-202ENST00000447578 FAM174AQ8TBP5 190 aa9.33□□□□□ -0.92
VPS29-202ENST00000447578 POLR3EQ9NVU0 708 aa9.33□□□□□ -0.92
VPS29-202ENST00000447578 WDR4P57081 412 aaKnown RBP9.32□□□□□ -0.92
VPS29-202ENST00000447578 AGERQ15109 404 aa9.32□□□□□ -0.92
VPS29-202ENST00000447578 ZFP42Q96MM3 310 aa9.32□□□□□ -0.92
VPS29-202ENST00000447578 VSIG8P0DPA2 414 aa9.31□□□□□ -0.92
VPS29-202ENST00000447578 TIMP2P16035 220 aa9.31□□□□□ -0.92
VPS29-202ENST00000447578 TUSC1Q2TAM9 212 aa9.31□□□□□ -0.92
VPS29-202ENST00000447578 ADH1CP00326 375 aa9.3□□□□□ -0.92
VPS29-202ENST00000447578 CLK2P49760 499 aaKnown RBP9.3□□□□□ -0.92
VPS29-202ENST00000447578 CDK15Q96Q40 435 aa9.3□□□□□ -0.92
VPS29-202ENST00000447578 KLF16Q9BXK1 252 aaPredicted RBP9.3□□□□□ -0.92
VPS29-202ENST00000447578 GPAT2Q6NUI2 795 aa9.29□□□□□ -0.92
VPS29-202ENST00000447578 NR3C2P08235 984 aa9.28□□□□□ -0.92
VPS29-202ENST00000447578 GRM5P41594 1212 aa9.28□□□□□ -0.92
VPS29-202ENST00000447578 MRPL14Q6P1L8 145 aaKnown RBP9.28□□□□□ -0.92
VPS29-202ENST00000447578 BPHLQ86WA6 291 aaPredicted RBP9.28□□□□□ -0.92
VPS29-202ENST00000447578 PURBQ96QR8 312 aaKnown RBP9.28□□□□□ -0.92
VPS29-202ENST00000447578 ZFAND3Q9H8U3 227 aa9.28□□□□□ -0.92
VPS29-202ENST00000447578 SOBPA7XYQ1 873 aa9.26□□□□□ -0.93
VPS29-202ENST00000447578 ZIC2O95409 532 aaPredicted RBP9.26□□□□□ -0.93
VPS29-202ENST00000447578 CTDSPL2Q05D32 466 aa9.26□□□□□ -0.93
VPS29-202ENST00000447578 FBXO31Q5XUX0 539 aaPredicted RBP9.26□□□□□ -0.93
VPS29-202ENST00000447578 HELBQ8NG08 1087 aaPredicted RBP9.26□□□□□ -0.93
VPS29-202ENST00000447578 ITPKCQ96DU7 683 aa9.26□□□□□ -0.93
VPS29-202ENST00000447578 RSPH6AQ9H0K4 717 aa9.26□□□□□ -0.93
VPS29-202ENST00000447578 DNMT3AQ9Y6K1 912 aaPredicted RBP9.26□□□□□ -0.93
VPS29-202ENST00000447578 GPBP1L1Q9HC44 474 aaPredicted RBP9.25□□□□□ -0.93
VPS29-202ENST00000447578 SCARF1Q14162 830 aa9.24□□□□□ -0.93
VPS29-202ENST00000447578 SH3RF1Q7Z6J0 888 aa9.24□□□□□ -0.93
VPS29-202ENST00000447578 ARMC2Q8NEN0 867 aa9.24□□□□□ -0.93
VPS29-202ENST00000447578 MAGEB6P1A0A0J9YX57 407 aa9.23□□□□□ -0.93
VPS29-202ENST00000447578 FOXK2Q01167 660 aa9.23□□□□□ -0.93
VPS29-202ENST00000447578 NR5A1Q13285 461 aa9.23□□□□□ -0.93
VPS29-202ENST00000447578 SH3BP5LQ7L8J4 393 aa9.23□□□□□ -0.93
VPS29-202ENST00000447578 ADAMTS8Q9UP79 889 aa9.23□□□□□ -0.93
VPS29-202ENST00000447578 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.22□□□□□ -0.93
VPS29-202ENST00000447578 C6orf118Q5T5N4 469 aa9.22□□□□□ -0.93
VPS29-202ENST00000447578 PROCA1Q8NCQ7 364 aaPredicted RBP9.22□□□□□ -0.93
VPS29-202ENST00000447578 LRRN4Q8WUT4 740 aa9.22□□□□□ -0.93
VPS29-202ENST00000447578 C1QTNF2Q9BXJ5 285 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms