RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 U2AF1L5P0DN76 240 aaPredicted RBP22■■□□□ 1.11
USHBP1-203ENST00000431146 U2AF1Q01081 240 aaKnown RBP eCLIP22■■□□□ 1.11
USHBP1-203ENST00000431146 GOLGA2Q08379 1002 aa22■■□□□ 1.11
USHBP1-203ENST00000431146 NEUROD2Q15784 382 aa21.99■■□□□ 1.11
USHBP1-203ENST00000431146 RRP7AQ9Y3A4 280 aaKnown RBP21.99■■□□□ 1.11
USHBP1-203ENST00000431146 TOPAZ1Q8N9V7 1692 aa21.99■■□□□ 1.11
USHBP1-203ENST00000431146 ERICH6BQ5W0A0 696 aa21.98■■□□□ 1.11
USHBP1-203ENST00000431146 PPM1GO15355 546 aaPredicted RBP21.98■■□□□ 1.11
USHBP1-203ENST00000431146 RUNDC1Q96C34 613 aa21.98■■□□□ 1.11
USHBP1-203ENST00000431146 SPINK5Q9NQ38 1064 aaPredicted RBP21.98■■□□□ 1.11
USHBP1-203ENST00000431146 MAP2P11137 1827 aaKnown RBP21.98■■□□□ 1.11
USHBP1-203ENST00000431146 COL3A1P02461 1466 aaPredicted RBP21.97■■□□□ 1.11
USHBP1-203ENST00000431146 NKTRP30414 1462 aaKnown RBP21.97■■□□□ 1.11
USHBP1-203ENST00000431146 U2SURPO15042 1029 aaKnown RBP21.97■■□□□ 1.11
USHBP1-203ENST00000431146 DUSP27Q5VZP5 1158 aa21.97■■□□□ 1.11
USHBP1-203ENST00000431146 PPP4R2Q9NY27 417 aa21.97■■□□□ 1.11
USHBP1-203ENST00000431146 DMRT2Q9Y5R5 561 aa21.97■■□□□ 1.11
USHBP1-203ENST00000431146 ACEP12821 1306 aa21.97■■□□□ 1.11
USHBP1-203ENST00000431146 RGPD8O14715 1765 aaPredicted RBP21.97■■□□□ 1.11
USHBP1-203ENST00000431146 RRP1P56182 461 aaKnown RBP21.97■■□□□ 1.11
USHBP1-203ENST00000431146 TCP11L2Q8N4U5 519 aa21.95■■□□□ 1.11
USHBP1-203ENST00000431146 SLFN5Q08AF3 891 aa21.94■■□□□ 1.1
USHBP1-203ENST00000431146 B4GALNT3Q6L9W6 998 aa21.94■■□□□ 1.1
USHBP1-203ENST00000431146 ZNF692Q9BU19 519 aaPredicted RBP21.94■■□□□ 1.1
USHBP1-203ENST00000431146 POLKQ9UBT6 870 aa21.94■■□□□ 1.1
USHBP1-203ENST00000431146 PMFBP1Q8TBY8 1022 aa21.94■■□□□ 1.1
USHBP1-203ENST00000431146 IQSEC2Q5JU85 1478 aa21.93■■□□□ 1.1
USHBP1-203ENST00000431146 RBM33Q96EV2 1170 aaKnown RBP21.93■■□□□ 1.1
USHBP1-203ENST00000431146 WWC1Q8IX03 1113 aa21.92■■□□□ 1.1
USHBP1-203ENST00000431146 CHD2O14647 1828 aaKnown RBP21.92■■□□□ 1.1
USHBP1-203ENST00000431146 PLEKHG3A1L390 1219 aa21.92■■□□□ 1.1
USHBP1-203ENST00000431146 COG3Q96JB2 828 aa21.92■■□□□ 1.1
USHBP1-203ENST00000431146 EMILIN1Q9Y6C2 1016 aa21.92■■□□□ 1.1
USHBP1-203ENST00000431146 PIK3R4Q99570 1358 aa21.91■■□□□ 1.1
USHBP1-203ENST00000431146 PLIN1O60240 522 aa21.91■■□□□ 1.1
USHBP1-203ENST00000431146 DIAPH1O60610 1272 aaKnown RBP21.91■■□□□ 1.1
USHBP1-203ENST00000431146 NRKQ7Z2Y5 1582 aa21.91■■□□□ 1.1
USHBP1-203ENST00000431146 PNPLA6Q8IY17 1366 aa21.9■■□□□ 1.1
USHBP1-203ENST00000431146 TTC21BQ7Z4L5 1316 aa21.89■■□□□ 1.1
USHBP1-203ENST00000431146 RRS1Q15050 365 aaKnown RBP21.89■■□□□ 1.09
USHBP1-203ENST00000431146 TRMT2AQ8IZ69 625 aaKnown RBP21.88■■□□□ 1.09
USHBP1-203ENST00000431146 USP6P35125 1406 aa21.88■■□□□ 1.09
USHBP1-203ENST00000431146 NGEFQ8N5V2 710 aa21.88■■□□□ 1.09
USHBP1-203ENST00000431146 E9PSI1 815 aa21.86■■□□□ 1.09
USHBP1-203ENST00000431146 PLEKHF1Q96S99 279 aa21.86■■□□□ 1.09
USHBP1-203ENST00000431146 NPHP4O75161 1426 aaPredicted RBP21.85■■□□□ 1.09
USHBP1-203ENST00000431146 NGDNQ8NEJ9 315 aaKnown RBP21.85■■□□□ 1.09
USHBP1-203ENST00000431146 NALCNQ8IZF0 1738 aa21.85■■□□□ 1.09
USHBP1-203ENST00000431146 EXOC6Q8TAG9 804 aa21.84■■□□□ 1.09
USHBP1-203ENST00000431146 FMN2Q9NZ56 1722 aa21.83■■□□□ 1.09
USHBP1-203ENST00000431146 PHF23Q9BUL5 403 aaPredicted RBP21.83■■□□□ 1.08
USHBP1-203ENST00000431146 AATKQ6ZMQ8 1374 aa21.83■■□□□ 1.08
USHBP1-203ENST00000431146 SOX12O15370 315 aa21.82■■□□□ 1.08
USHBP1-203ENST00000431146 MAPK8IP3Q9UPT6 1336 aa21.81■■□□□ 1.08
USHBP1-203ENST00000431146 SSH2Q76I76 1423 aa21.81■■□□□ 1.08
USHBP1-203ENST00000431146 OVOS2A0A0J9YW53 1432 aa21.8■■□□□ 1.08
USHBP1-203ENST00000431146 OVOS2Q6IE36 1432 aa21.8■■□□□ 1.08
USHBP1-203ENST00000431146 CDK12Q9NYV4 1490 aaPredicted RBP21.8■■□□□ 1.08
USHBP1-203ENST00000431146 HMOX1P09601 288 aa21.8■■□□□ 1.08
USHBP1-203ENST00000431146 LRRC7Q96NW7 1537 aa21.8■■□□□ 1.08
USHBP1-203ENST00000431146 TMPOP42166 694 aaKnown RBP21.79■■□□□ 1.08
USHBP1-203ENST00000431146 TSHZ2Q9NRE2 1034 aa21.79■■□□□ 1.08
USHBP1-203ENST00000431146 CCDC27Q2M243 656 aa21.79■■□□□ 1.08
USHBP1-203ENST00000431146 CCDC136Q96JN2 1154 aa21.79■■□□□ 1.08
USHBP1-203ENST00000431146 IL13P35225 146 aa21.78■■□□□ 1.08
USHBP1-203ENST00000431146 C20orf194Q5TEA3 1177 aa21.78■■□□□ 1.08
USHBP1-203ENST00000431146 ANKARQ7Z5J8 1434 aa21.78■■□□□ 1.08
USHBP1-203ENST00000431146 PRKAR2BP31323 418 aa21.77■■□□□ 1.08
USHBP1-203ENST00000431146 WDR63Q8IWG1 891 aa21.77■■□□□ 1.08
USHBP1-203ENST00000431146 RSPH6AQ9H0K4 717 aa21.77■■□□□ 1.08
USHBP1-203ENST00000431146 FCHSD2O94868 740 aa21.76■■□□□ 1.07
USHBP1-203ENST00000431146 BCAR3O75815 825 aa21.75■■□□□ 1.07
USHBP1-203ENST00000431146 TRIM35Q9UPQ4 493 aa21.75■■□□□ 1.07
USHBP1-203ENST00000431146 C14orf37Q86TY3 774 aa21.74■■□□□ 1.07
USHBP1-203ENST00000431146 CRBNQ96SW2 442 aa21.74■■□□□ 1.07
USHBP1-203ENST00000431146 TTC21AQ8NDW8 1320 aa21.74■■□□□ 1.07
USHBP1-203ENST00000431146 PIK3C2AO00443 1686 aa21.74■■□□□ 1.07
USHBP1-203ENST00000431146 RIPK4P57078 832 aa21.74■■□□□ 1.07
USHBP1-203ENST00000431146 NUTM2GQ5VZR2 741 aa21.73■■□□□ 1.07
USHBP1-203ENST00000431146 PHACTR3Q96KR7 559 aa21.73■■□□□ 1.07
USHBP1-203ENST00000431146 PNNQ9H307 717 aaKnown RBP21.73■■□□□ 1.07
USHBP1-203ENST00000431146 PEAK1Q9H792 1746 aa21.73■■□□□ 1.07
USHBP1-203ENST00000431146 ADGRL3Q9HAR2 1447 aa21.73■■□□□ 1.07
USHBP1-203ENST00000431146 USP31Q70CQ4 1352 aa21.71■■□□□ 1.07
USHBP1-203ENST00000431146 PAK3O75914 559 aaPredicted RBP21.71■■□□□ 1.07
USHBP1-203ENST00000431146 NCBP3Q53F19 620 aaKnown RBP21.7■■□□□ 1.06
USHBP1-203ENST00000431146 PHF8Q9UPP1 1060 aa21.7■■□□□ 1.06
USHBP1-203ENST00000431146 HSP90AB2PQ58FF8 381 aa21.7■■□□□ 1.06
USHBP1-203ENST00000431146 TSR2Q969E8 191 aaKnown RBP21.7■■□□□ 1.06
USHBP1-203ENST00000431146 NLRP6P59044 892 aa21.69■■□□□ 1.06
USHBP1-203ENST00000431146 EIF4A2Q14240 407 aaKnown RBP21.69■■□□□ 1.06
USHBP1-203ENST00000431146 ESCO1Q5FWF5 840 aa21.68■■□□□ 1.06
USHBP1-203ENST00000431146 NEFMP07197 916 aa21.68■■□□□ 1.06
USHBP1-203ENST00000431146 HSPA2P54652 639 aa21.68■■□□□ 1.06
USHBP1-203ENST00000431146 MAP3K19Q56UN5 1328 aa21.67■■□□□ 1.06
USHBP1-203ENST00000431146 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.67■■□□□ 1.06
USHBP1-203ENST00000431146 MYH16Q9H6N6 1097 aa21.67■■□□□ 1.06
USHBP1-203ENST00000431146 NWD1Q149M9 1564 aa21.67■■□□□ 1.06
USHBP1-203ENST00000431146 PROSER2Q86WR7 435 aaPredicted RBP21.67■■□□□ 1.06
USHBP1-203ENST00000431146 ABTB2Q8N961 1025 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms