RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 AEBP1Q8IUX7 1158 aa10.8□□□□□ -0.68
CD44-208ENST00000428726 NGEFQ8N5V2 710 aa10.8□□□□□ -0.68
CD44-208ENST00000428726 PCDHB15Q9Y5E8 787 aa10.8□□□□□ -0.68
CD44-208ENST00000428726 ZFYVE9O95405 1425 aa10.8□□□□□ -0.68
CD44-208ENST00000428726 XPCQ01831 940 aaPredicted RBP10.79□□□□□ -0.68
CD44-208ENST00000428726 HDGFL2Q7Z4V5 671 aaPredicted RBP10.79□□□□□ -0.68
CD44-208ENST00000428726 ITPRIPQ8IWB1 547 aa10.79□□□□□ -0.68
CD44-208ENST00000428726 POLR3AO14802 1390 aaPredicted RBP10.79□□□□□ -0.68
CD44-208ENST00000428726 NEFMP07197 916 aa10.79□□□□□ -0.68
CD44-208ENST00000428726 LMOD2Q6P5Q4 547 aa10.79□□□□□ -0.68
CD44-208ENST00000428726 FTSJ3Q8IY81 847 aaKnown RBP10.79□□□□□ -0.68
CD44-208ENST00000428726 TERF2IPQ9NYB0 399 aa10.79□□□□□ -0.68
CD44-208ENST00000428726 BACH2Q9BYV9 841 aa10.79□□□□□ -0.68
CD44-208ENST00000428726 LTKP29376 864 aa10.78□□□□□ -0.68
CD44-208ENST00000428726 RARSP54136 660 aaKnown RBP10.78□□□□□ -0.68
CD44-208ENST00000428726 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.78□□□□□ -0.68
CD44-208ENST00000428726 METP08581 1390 aa10.78□□□□□ -0.68
CD44-208ENST00000428726 DIAPH1O60610 1272 aaKnown RBP10.78□□□□□ -0.68
CD44-208ENST00000428726 TSPYL6Q8N831 410 aa10.78□□□□□ -0.68
CD44-208ENST00000428726 ARHGEF28Q8N1W1 1705 aaKnown RBP10.78□□□□□ -0.68
CD44-208ENST00000428726 TMPOP42166 694 aaKnown RBP10.77□□□□□ -0.68
CD44-208ENST00000428726 USP32Q8NFA0 1604 aa10.77□□□□□ -0.69
CD44-208ENST00000428726 PREX1Q8TCU6 1659 aa10.77□□□□□ -0.69
CD44-208ENST00000428726 SSH1Q8WYL5 1049 aa10.76□□□□□ -0.69
CD44-208ENST00000428726 NUDT16Q96DE0 195 aaKnown RBP10.76□□□□□ -0.69
CD44-208ENST00000428726 POLKQ9UBT6 870 aa10.76□□□□□ -0.69
CD44-208ENST00000428726 NOB1Q9ULX3 412 aaKnown RBP10.76□□□□□ -0.69
CD44-208ENST00000428726 TRMT2AQ8IZ69 625 aaKnown RBP10.76□□□□□ -0.69
CD44-208ENST00000428726 ANO8Q9HCE9 1232 aaPredicted RBP10.76□□□□□ -0.69
CD44-208ENST00000428726 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.76□□□□□ -0.69
CD44-208ENST00000428726 ATAD2Q6PL18 1390 aa10.76□□□□□ -0.69
CD44-208ENST00000428726 TRIM35Q9UPQ4 493 aa10.75□□□□□ -0.69
CD44-208ENST00000428726 TMEM131LA2VDJ0 1609 aa10.75□□□□□ -0.69
CD44-208ENST00000428726 FOXO3O43524 673 aa10.75□□□□□ -0.69
CD44-208ENST00000428726 MCM10Q7L590 875 aa10.75□□□□□ -0.69
CD44-208ENST00000428726 TULP4Q9NRJ4 1543 aa10.74□□□□□ -0.69
CD44-208ENST00000428726 ANKRD36BQ8N2N9 1353 aa10.74□□□□□ -0.69
CD44-208ENST00000428726 SLKQ9H2G2 1235 aaPredicted RBP10.74□□□□□ -0.69
CD44-208ENST00000428726 DIP2BQ9P265 1576 aa10.74□□□□□ -0.69
CD44-208ENST00000428726 NSD2O96028 1365 aa10.74□□□□□ -0.69
CD44-208ENST00000428726 HSP90AB2PQ58FF8 381 aa10.74□□□□□ -0.69
CD44-208ENST00000428726 DAXXQ9UER7 740 aaPredicted RBP10.74□□□□□ -0.69
CD44-208ENST00000428726 PPP6R1Q9UPN7 881 aa10.74□□□□□ -0.69
CD44-208ENST00000428726 YTHDC2Q9H6S0 1430 aaKnown RBP10.74□□□□□ -0.69
CD44-208ENST00000428726 MYO5BQ9ULV0 1848 aa10.74□□□□□ -0.69
CD44-208ENST00000428726 USHBP1Q8N6Y0 703 aa10.74□□□□□ -0.69
CD44-208ENST00000428726 RIMBP3CA6NJZ7 1639 aa10.73□□□□□ -0.69
CD44-208ENST00000428726 RIMBP3BA6NNM3 1639 aa10.73□□□□□ -0.69
CD44-208ENST00000428726 RIMBP3Q9UFD9 1639 aa10.73□□□□□ -0.69
CD44-208ENST00000428726 NINLQ9Y2I6 1382 aa10.73□□□□□ -0.69
CD44-208ENST00000428726 REREQ9P2R6 1566 aa10.73□□□□□ -0.69
CD44-208ENST00000428726 NKTRP30414 1462 aaKnown RBP10.73□□□□□ -0.69
CD44-208ENST00000428726 ZMYM3Q14202 1370 aa10.73□□□□□ -0.69
CD44-208ENST00000428726 SULT6B1Q6IMI4 303 aa10.73□□□□□ -0.69
CD44-208ENST00000428726 WASLO00401 505 aaPredicted RBP10.72□□□□□ -0.69
CD44-208ENST00000428726 AGLP35573 1532 aa10.72□□□□□ -0.69
CD44-208ENST00000428726 SHPRHQ149N8 1683 aa10.72□□□□□ -0.69
CD44-208ENST00000428726 TRIM27P14373 513 aa10.71□□□□□ -0.69
CD44-208ENST00000428726 TMEM57Q8N5G2 664 aa10.71□□□□□ -0.69
CD44-208ENST00000428726 PRR36Q9H6K5 1346 aa10.71□□□□□ -0.69
CD44-208ENST00000428726 MS4A1P11836 297 aa10.71□□□□□ -0.69
CD44-208ENST00000428726 NGDNQ8NEJ9 315 aaKnown RBP10.71□□□□□ -0.69
CD44-208ENST00000428726 PDZRN3Q9UPQ7 1066 aa10.71□□□□□ -0.69
CD44-208ENST00000428726 GOLGB1Q14789 3259 aaKnown RBP10.71□□□□□ -0.7
CD44-208ENST00000428726 CENPQQ7L2Z9 268 aaPredicted RBP10.71□□□□□ -0.7
CD44-208ENST00000428726 COG3Q96JB2 828 aa10.71□□□□□ -0.7
CD44-208ENST00000428726 LNPKQ9C0E8 428 aa10.71□□□□□ -0.7
CD44-208ENST00000428726 KDM2BQ8NHM5 1336 aa10.7□□□□□ -0.7
CD44-208ENST00000428726 RIMS2Q9UQ26 1411 aa10.7□□□□□ -0.7
CD44-208ENST00000428726 C8orf34Q49A92 452 aa10.7□□□□□ -0.7
CD44-208ENST00000428726 PTPRMP28827 1452 aa10.69□□□□□ -0.7
CD44-208ENST00000428726 DZIP1LQ8IYY4 767 aaKnown RBP10.69□□□□□ -0.7
CD44-208ENST00000428726 PLEKHF1Q96S99 279 aa10.69□□□□□ -0.7
CD44-208ENST00000428726 FOXD4L1Q9NU39 408 aa10.69□□□□□ -0.7
CD44-208ENST00000428726 AMOTL2Q9Y2J4 779 aa10.69□□□□□ -0.7
CD44-208ENST00000428726 MFAP1P55081 439 aaKnown RBP10.68□□□□□ -0.7
CD44-208ENST00000428726 C8orf58Q8NAV2 365 aa10.68□□□□□ -0.7
CD44-208ENST00000428726 MYH16Q9H6N6 1097 aa10.68□□□□□ -0.7
CD44-208ENST00000428726 ABCC11Q96J66 1382 aa10.68□□□□□ -0.7
CD44-208ENST00000428726 ACEP12821 1306 aa10.68□□□□□ -0.7
CD44-208ENST00000428726 ALKQ9UM73 1620 aa10.68□□□□□ -0.7
CD44-208ENST00000428726 ZKSCAN2Q63HK3 967 aa10.68□□□□□ -0.7
CD44-208ENST00000428726 SLC4A10Q6U841 1118 aa10.68□□□□□ -0.7
CD44-208ENST00000428726 CCDC61Q9Y6R9 512 aa10.68□□□□□ -0.7
CD44-208ENST00000428726 NCBP3Q53F19 620 aaKnown RBP10.67□□□□□ -0.7
CD44-208ENST00000428726 CLTCQ00610 1675 aaKnown RBP10.67□□□□□ -0.7
CD44-208ENST00000428726 IQSEC2Q5JU85 1478 aa10.67□□□□□ -0.7
CD44-208ENST00000428726 PPIP5K1Q6PFW1 1433 aa10.67□□□□□ -0.7
CD44-208ENST00000428726 FAM161AQ3B820 660 aa10.66□□□□□ -0.7
CD44-208ENST00000428726 BRPF3Q9ULD4 1205 aa10.66□□□□□ -0.7
CD44-208ENST00000428726 CCDC27Q2M243 656 aa10.66□□□□□ -0.7
CD44-208ENST00000428726 WDR63Q8IWG1 891 aa10.66□□□□□ -0.7
CD44-208ENST00000428726 DDX17Q92841 729 aaKnown RBP10.66□□□□□ -0.7
CD44-208ENST00000428726 SPATA31D1Q6ZQQ2 1576 aa10.66□□□□□ -0.7
CD44-208ENST00000428726 ROBO2Q9HCK4 1378 aa10.66□□□□□ -0.7
CD44-208ENST00000428726 NLRP6P59044 892 aa10.66□□□□□ -0.7
CD44-208ENST00000428726 MBIPQ9NS73 344 aa10.66□□□□□ -0.7
CD44-208ENST00000428726 F6X3S4 739 aa10.65□□□□□ -0.7
CD44-208ENST00000428726 RSPH6AQ9H0K4 717 aa10.65□□□□□ -0.7
CD44-208ENST00000428726 KCNA6P17658 529 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms