RNA–Protein interactions for RNA: ENST00000425072.5

MDC1-205, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-205ENST00000425072 FMN2Q9NZ56 1722 aa13.97□□□□□ -0.17
MDC1-205ENST00000425072 POLR3AO14802 1390 aaPredicted RBP13.96□□□□□ -0.17
MDC1-205ENST00000425072 MYBBP1AQ9BQG0 1328 aaKnown RBP13.96□□□□□ -0.17
MDC1-205ENST00000425072 NALCNQ8IZF0 1738 aa13.96□□□□□ -0.17
MDC1-205ENST00000425072 SLAIN2Q9P270 581 aa13.96□□□□□ -0.17
MDC1-205ENST00000425072 RGPD8O14715 1765 aaPredicted RBP13.96□□□□□ -0.18
MDC1-205ENST00000425072 TTC21AQ8NDW8 1320 aa13.95□□□□□ -0.18
MDC1-205ENST00000425072 CD163L1Q9NR16 1453 aa13.95□□□□□ -0.18
MDC1-205ENST00000425072 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.95□□□□□ -0.18
MDC1-205ENST00000425072 EDC4Q6P2E9 1401 aaKnown RBP13.95□□□□□ -0.18
MDC1-205ENST00000425072 PARD3Q8TEW0 1356 aa13.95□□□□□ -0.18
MDC1-205ENST00000425072 TTC21BQ7Z4L5 1316 aa13.94□□□□□ -0.18
MDC1-205ENST00000425072 NLRP13Q86W25 1043 aa13.94□□□□□ -0.18
MDC1-205ENST00000425072 ORAI2Q96SN7 254 aa13.94□□□□□ -0.18
MDC1-205ENST00000425072 COG3Q96JB2 828 aa13.93□□□□□ -0.18
MDC1-205ENST00000425072 USP32Q8NFA0 1604 aa13.93□□□□□ -0.18
MDC1-205ENST00000425072 C1orf167Q5SNV9 1468 aa13.93□□□□□ -0.18
MDC1-205ENST00000425072 FOXO3O43524 673 aa13.92□□□□□ -0.18
MDC1-205ENST00000425072 GGNBP2Q9H3C7 697 aa13.92□□□□□ -0.18
MDC1-205ENST00000425072 AKAP12Q02952 1782 aa13.91□□□□□ -0.18
MDC1-205ENST00000425072 PAK3O75914 559 aaPredicted RBP13.91□□□□□ -0.18
MDC1-205ENST00000425072 PPP2R1AP30153 589 aa13.91□□□□□ -0.18
MDC1-205ENST00000425072 KRT28Q7Z3Y7 464 aa13.91□□□□□ -0.18
MDC1-205ENST00000425072 MRS2Q9HD23 443 aa13.91□□□□□ -0.18
MDC1-205ENST00000425072 TOPAZ1Q8N9V7 1692 aa13.91□□□□□ -0.18
MDC1-205ENST00000425072 USP6P35125 1406 aa13.9□□□□□ -0.18
MDC1-205ENST00000425072 MST1RQ04912 1400 aa13.9□□□□□ -0.18
MDC1-205ENST00000425072 XIRP1Q702N8 1843 aaKnown RBP13.9□□□□□ -0.18
MDC1-205ENST00000425072 ABTB2Q8N961 1025 aa13.9□□□□□ -0.18
MDC1-205ENST00000425072 NPHP3Q7Z494 1330 aa13.9□□□□□ -0.19
MDC1-205ENST00000425072 TOM1O60784 492 aa13.89□□□□□ -0.19
MDC1-205ENST00000425072 NLRP6P59044 892 aa13.88□□□□□ -0.19
MDC1-205ENST00000425072 NME9Q86XW9 330 aa13.88□□□□□ -0.19
MDC1-205ENST00000425072 CFAP53Q96M91 514 aa13.88□□□□□ -0.19
MDC1-205ENST00000425072 SSH2Q76I76 1423 aa13.88□□□□□ -0.19
MDC1-205ENST00000425072 MON2Q7Z3U7 1717 aa13.87□□□□□ -0.19
MDC1-205ENST00000425072 TNNT2P45379 298 aaPredicted RBP13.87□□□□□ -0.19
MDC1-205ENST00000425072 KIF1AQ12756 1690 aa13.86□□□□□ -0.19
MDC1-205ENST00000425072 BRINP3Q76B58 766 aa13.86□□□□□ -0.19
MDC1-205ENST00000425072 USP31Q70CQ4 1352 aa13.85□□□□□ -0.19
MDC1-205ENST00000425072 MTHFSP49914 203 aa13.85□□□□□ -0.19
MDC1-205ENST00000425072 SRCAPQ6ZRS2 3230 aa13.85□□□□□ -0.19
MDC1-205ENST00000425072 KCNH5Q8NCM2 988 aa13.84□□□□□ -0.19
MDC1-205ENST00000425072 PNISRQ8TF01 805 aaKnown RBP13.84□□□□□ -0.19
MDC1-205ENST00000425072 RGS17Q9UGC6 210 aaPredicted RBP13.84□□□□□ -0.19
MDC1-205ENST00000425072 KIF20BQ96Q89 1820 aa13.83□□□□□ -0.2
MDC1-205ENST00000425072 CCDC184Q52MB2 194 aa13.83□□□□□ -0.2
MDC1-205ENST00000425072 LMOD2Q6P5Q4 547 aa13.83□□□□□ -0.2
MDC1-205ENST00000425072 ZRANB1Q9UGI0 708 aa13.83□□□□□ -0.2
MDC1-205ENST00000425072 SBNO1A3KN83 1393 aa13.83□□□□□ -0.2
MDC1-205ENST00000425072 AATKQ6ZMQ8 1374 aa13.83□□□□□ -0.2
MDC1-205ENST00000425072 PIP4K2BP78356 416 aa13.82□□□□□ -0.2
MDC1-205ENST00000425072 FAM9BQ8IZU0 186 aa13.82□□□□□ -0.2
MDC1-205ENST00000425072 NUDCQ9Y266 331 aa13.82□□□□□ -0.2
MDC1-205ENST00000425072 ANKRD26Q9UPS8 1709 aa13.81□□□□□ -0.2
MDC1-205ENST00000425072 XPCQ01831 940 aaPredicted RBP13.81□□□□□ -0.2
MDC1-205ENST00000425072 POLKQ9UBT6 870 aa13.81□□□□□ -0.2
MDC1-205ENST00000425072 WDR43Q15061 677 aaKnown RBP eCLIP13.8□□□□□ -0.2
MDC1-205ENST00000425072 LRRC59Q96AG4 307 aaKnown RBP13.8□□□□□ -0.2
MDC1-205ENST00000425072 SOS2Q07890 1332 aaPredicted RBP13.8□□□□□ -0.2
MDC1-205ENST00000425072 MAP2P11137 1827 aaKnown RBP13.79□□□□□ -0.2
MDC1-205ENST00000425072 PPM1GO15355 546 aaPredicted RBP13.79□□□□□ -0.2
MDC1-205ENST00000425072 NUTM2GQ5VZR2 741 aa13.79□□□□□ -0.2
MDC1-205ENST00000425072 PNNQ9H307 717 aaKnown RBP13.79□□□□□ -0.2
MDC1-205ENST00000425072 SPATA31A3Q5VYP0 1347 aa13.79□□□□□ -0.2
MDC1-205ENST00000425072 ARHGEF10O15013 1369 aa13.78□□□□□ -0.2
MDC1-205ENST00000425072 OVOS2A0A0J9YW53 1432 aa13.77□□□□□ -0.21
MDC1-205ENST00000425072 DIAPH1O60610 1272 aaKnown RBP13.77□□□□□ -0.21
MDC1-205ENST00000425072 GCP02774 474 aa13.77□□□□□ -0.21
MDC1-205ENST00000425072 INSRP06213 1382 aa13.77□□□□□ -0.21
MDC1-205ENST00000425072 AMPHP49418 695 aa13.77□□□□□ -0.21
MDC1-205ENST00000425072 OVOS2Q6IE36 1432 aa13.77□□□□□ -0.21
MDC1-205ENST00000425072 NRKQ7Z2Y5 1582 aa13.77□□□□□ -0.21
MDC1-205ENST00000425072 DDX17Q92841 729 aaKnown RBP13.77□□□□□ -0.21
MDC1-205ENST00000425072 KIF24Q5T7B8 1368 aa13.76□□□□□ -0.21
MDC1-205ENST00000425072 FBLN1P23142 703 aa13.75□□□□□ -0.21
MDC1-205ENST00000425072 ADAMTS8Q9UP79 889 aa13.75□□□□□ -0.21
MDC1-205ENST00000425072 PNPLA6Q8IY17 1366 aa13.74□□□□□ -0.21
MDC1-205ENST00000425072 SOX12O15370 315 aa13.74□□□□□ -0.21
MDC1-205ENST00000425072 RRS1Q15050 365 aaKnown RBP13.74□□□□□ -0.21
MDC1-205ENST00000425072 EMILIN1Q9Y6C2 1016 aa13.74□□□□□ -0.21
MDC1-205ENST00000425072 TNS3Q68CZ2 1445 aa13.73□□□□□ -0.21
MDC1-205ENST00000425072 YTHDC1Q96MU7 727 aaKnown RBP13.73□□□□□ -0.21
MDC1-205ENST00000425072 PXDNQ92626 1479 aa13.73□□□□□ -0.21
MDC1-205ENST00000425072 TRPM3Q9HCF6 1732 aaPredicted RBP13.73□□□□□ -0.21
MDC1-205ENST00000425072 PIK3C2AO00443 1686 aa13.72□□□□□ -0.21
MDC1-205ENST00000425072 USP19O94966 1318 aa13.72□□□□□ -0.21
MDC1-205ENST00000425072 MAP3K19Q56UN5 1328 aa13.72□□□□□ -0.21
MDC1-205ENST00000425072 HAP1P54257 671 aaPredicted RBP13.72□□□□□ -0.21
MDC1-205ENST00000425072 ARHGEF25Q86VW2 580 aa13.72□□□□□ -0.21
MDC1-205ENST00000425072 IP6K1Q92551 441 aa13.72□□□□□ -0.21
MDC1-205ENST00000425072 U2SURPO15042 1029 aaKnown RBP13.71□□□□□ -0.21
MDC1-205ENST00000425072 NEFMP07197 916 aa13.71□□□□□ -0.21
MDC1-205ENST00000425072 U2AF1L5P0DN76 240 aaPredicted RBP13.71□□□□□ -0.21
MDC1-205ENST00000425072 U2AF1Q01081 240 aaKnown RBP eCLIP13.71□□□□□ -0.21
MDC1-205ENST00000425072 NGEFQ8N5V2 710 aa13.71□□□□□ -0.21
MDC1-205ENST00000425072 USP54Q70EL1 1684 aa13.71□□□□□ -0.21
MDC1-205ENST00000425072 FLT4P35916 1363 aa13.71□□□□□ -0.22
MDC1-205ENST00000425072 FCHSD2O94868 740 aa13.7□□□□□ -0.22
MDC1-205ENST00000425072 HSP90AB2PQ58FF8 381 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms