RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 MAP3K4Q9Y6R4 1608 aa18.38■□□□□ 0.53
NCKIPSD-204ENST00000416649 ABCC3O15438 1527 aa18.38■□□□□ 0.53
NCKIPSD-204ENST00000416649 RARSP54136 660 aaKnown RBP18.37■□□□□ 0.53
NCKIPSD-204ENST00000416649 WWC1Q8IX03 1113 aa18.37■□□□□ 0.53
NCKIPSD-204ENST00000416649 DIP2BQ9P265 1576 aa18.37■□□□□ 0.53
NCKIPSD-204ENST00000416649 MROH2AA6NES4 1674 aa18.36■□□□□ 0.53
NCKIPSD-204ENST00000416649 RICTORQ6R327 1708 aa18.35■□□□□ 0.53
NCKIPSD-204ENST00000416649 AAMPQ13685 434 aa18.35■□□□□ 0.53
NCKIPSD-204ENST00000416649 FTSJ3Q8IY81 847 aaKnown RBP18.35■□□□□ 0.53
NCKIPSD-204ENST00000416649 ESF1Q9H501 851 aaKnown RBP18.35■□□□□ 0.53
NCKIPSD-204ENST00000416649 SCAF11Q99590 1463 aaKnown RBP18.35■□□□□ 0.53
NCKIPSD-204ENST00000416649 MAP7D2Q96T17 732 aa18.35■□□□□ 0.53
NCKIPSD-204ENST00000416649 GOLGA6L22H0YM25 854 aa18.34■□□□□ 0.53
NCKIPSD-204ENST00000416649 PPP1R9BQ96SB3 815 aa18.34■□□□□ 0.53
NCKIPSD-204ENST00000416649 NINLQ9Y2I6 1382 aa18.34■□□□□ 0.53
NCKIPSD-204ENST00000416649 KIF1BO60333 1816 aa18.34■□□□□ 0.53
NCKIPSD-204ENST00000416649 SSFA2P28290 1259 aa18.33■□□□□ 0.53
NCKIPSD-204ENST00000416649 RAB3GAP1Q15042 981 aa18.33■□□□□ 0.52
NCKIPSD-204ENST00000416649 SLC12A5Q9H2X9 1139 aa18.31■□□□□ 0.52
NCKIPSD-204ENST00000416649 SIGLEC1Q9BZZ2 1709 aa18.3■□□□□ 0.52
NCKIPSD-204ENST00000416649 VGFO15240 615 aaPredicted RBP18.29■□□□□ 0.52
NCKIPSD-204ENST00000416649 CAVIN1Q6NZI2 390 aaKnown RBP18.29■□□□□ 0.52
NCKIPSD-204ENST00000416649 SMC5Q8IY18 1101 aa18.29■□□□□ 0.52
NCKIPSD-204ENST00000416649 C14orf93Q9H972 538 aaKnown RBP18.29■□□□□ 0.52
NCKIPSD-204ENST00000416649 DDIT3P35638 169 aa18.29■□□□□ 0.52
NCKIPSD-204ENST00000416649 CD2BP2O95400 341 aaKnown RBP18.29■□□□□ 0.52
NCKIPSD-204ENST00000416649 CIZ1Q9ULV3 898 aaPredicted RBP18.28■□□□□ 0.52
NCKIPSD-204ENST00000416649 MVPQ14764 893 aaKnown RBP18.28■□□□□ 0.52
NCKIPSD-204ENST00000416649 STAC3Q96MF2 364 aa18.28■□□□□ 0.52
NCKIPSD-204ENST00000416649 RBM42Q9BTD8 480 aaKnown RBP18.28■□□□□ 0.52
NCKIPSD-204ENST00000416649 LMTK2Q8IWU2 1503 aa18.28■□□□□ 0.52
NCKIPSD-204ENST00000416649 CAMSAP1Q5T5Y3 1602 aa18.27■□□□□ 0.52
NCKIPSD-204ENST00000416649 CDCA8Q53HL2 280 aa18.27■□□□□ 0.52
NCKIPSD-204ENST00000416649 CABP2Q9NPB3 220 aa18.27■□□□□ 0.52
NCKIPSD-204ENST00000416649 CEBPAP49715 358 aaPredicted RBP18.27■□□□□ 0.52
NCKIPSD-204ENST00000416649 MCTP1Q6DN14 999 aa18.27■□□□□ 0.52
NCKIPSD-204ENST00000416649 ITPRIPQ8IWB1 547 aa18.27■□□□□ 0.52
NCKIPSD-204ENST00000416649 SMAP1Q8IYB5 467 aaPredicted RBP18.27■□□□□ 0.52
NCKIPSD-204ENST00000416649 PIK3C2GO75747 1445 aa18.26■□□□□ 0.51
NCKIPSD-204ENST00000416649 PTMSP20962 102 aa18.26■□□□□ 0.51
NCKIPSD-204ENST00000416649 LNPKQ9C0E8 428 aa18.26■□□□□ 0.51
NCKIPSD-204ENST00000416649 MINK1Q8N4C8 1332 aaPredicted RBP18.26■□□□□ 0.51
NCKIPSD-204ENST00000416649 TERF1P54274 439 aa18.26■□□□□ 0.51
NCKIPSD-204ENST00000416649 DZIP1LQ8IYY4 767 aaKnown RBP18.25■□□□□ 0.51
NCKIPSD-204ENST00000416649 CARD14Q9BXL6 1004 aa18.25■□□□□ 0.51
NCKIPSD-204ENST00000416649 SLC52A1Q9NWF4 448 aa18.25■□□□□ 0.51
NCKIPSD-204ENST00000416649 GLI2P10070 1586 aa18.25■□□□□ 0.51
NCKIPSD-204ENST00000416649 SYNMO15061 1565 aa18.25■□□□□ 0.51
NCKIPSD-204ENST00000416649 TCP11L2Q8N4U5 519 aa18.25■□□□□ 0.51
NCKIPSD-204ENST00000416649 ZMYM3Q14202 1370 aa18.25■□□□□ 0.51
NCKIPSD-204ENST00000416649 ADGRB3O60242 1522 aa18.24■□□□□ 0.51
NCKIPSD-204ENST00000416649 SNX21Q969T3 373 aa18.24■□□□□ 0.51
NCKIPSD-204ENST00000416649 KLHL40Q2TBA0 621 aa18.24■□□□□ 0.51
NCKIPSD-204ENST00000416649 NOL7Q9UMY1 257 aaKnown RBP18.24■□□□□ 0.51
NCKIPSD-204ENST00000416649 BAG4O95429 457 aaKnown RBP18.23■□□□□ 0.51
NCKIPSD-204ENST00000416649 ZKSCAN2Q63HK3 967 aa18.23■□□□□ 0.51
NCKIPSD-204ENST00000416649 RBSNQ9H1K0 784 aa18.23■□□□□ 0.51
NCKIPSD-204ENST00000416649 ASXL1Q8IXJ9 1541 aa18.23■□□□□ 0.51
NCKIPSD-204ENST00000416649 DNTTIP2Q5QJE6 756 aaKnown RBP18.23■□□□□ 0.51
NCKIPSD-204ENST00000416649 GAS2L2Q8NHY3 880 aa18.23■□□□□ 0.51
NCKIPSD-204ENST00000416649 NCOA3Q9Y6Q9 1424 aa18.23■□□□□ 0.51
NCKIPSD-204ENST00000416649 K7ELQ4 463 aaPredicted RBP18.22■□□□□ 0.51
NCKIPSD-204ENST00000416649 RBM25P49756 843 aaKnown RBP18.22■□□□□ 0.51
NCKIPSD-204ENST00000416649 SRPK2P78362 688 aaKnown RBP18.22■□□□□ 0.51
NCKIPSD-204ENST00000416649 DYNC1I1O14576 645 aa18.22■□□□□ 0.51
NCKIPSD-204ENST00000416649 MYOM2P54296 1465 aa18.21■□□□□ 0.51
NCKIPSD-204ENST00000416649 IQGAP1P46940 1657 aa18.21■□□□□ 0.51
NCKIPSD-204ENST00000416649 JARID2Q92833 1246 aaPredicted RBP18.21■□□□□ 0.51
NCKIPSD-204ENST00000416649 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.21■□□□□ 0.51
NCKIPSD-204ENST00000416649 FGD1P98174 961 aa18.21■□□□□ 0.51
NCKIPSD-204ENST00000416649 ZSCAN23Q3MJ62 389 aa18.21■□□□□ 0.51
NCKIPSD-204ENST00000416649 SMC4Q9NTJ3 1288 aa18.21■□□□□ 0.51
NCKIPSD-204ENST00000416649 PRAM1Q96QH2 718 aa18.2■□□□□ 0.5
NCKIPSD-204ENST00000416649 ZNF500O60304 480 aaPredicted RBP18.2■□□□□ 0.5
NCKIPSD-204ENST00000416649 PRIM1P49642 420 aaKnown RBP18.2■□□□□ 0.5
NCKIPSD-204ENST00000416649 MTERF4Q7Z6M4 381 aaKnown RBP18.2■□□□□ 0.5
NCKIPSD-204ENST00000416649 NGEFQ8N5V2 710 aa18.2■□□□□ 0.5
NCKIPSD-204ENST00000416649 TSC1Q92574 1164 aa18.2■□□□□ 0.5
NCKIPSD-204ENST00000416649 ERVK-7P63135 1459 aa18.2■□□□□ 0.5
NCKIPSD-204ENST00000416649 MPNDQ8N594 471 aa18.19■□□□□ 0.5
NCKIPSD-204ENST00000416649 RBM27Q9P2N5 1060 aaKnown RBP18.19■□□□□ 0.5
NCKIPSD-204ENST00000416649 LAMC1P11047 1609 aa18.19■□□□□ 0.5
NCKIPSD-204ENST00000416649 RPGRIP1LQ68CZ1 1315 aa18.19■□□□□ 0.5
NCKIPSD-204ENST00000416649 PTMAP06454 111 aaKnown RBP18.19■□□□□ 0.5
NCKIPSD-204ENST00000416649 WAPLQ7Z5K2 1190 aa18.19■□□□□ 0.5
NCKIPSD-204ENST00000416649 ZKSCAN5Q9Y2L8 839 aa18.19■□□□□ 0.5
NCKIPSD-204ENST00000416649 RNF214Q8ND24 703 aa18.19■□□□□ 0.5
NCKIPSD-204ENST00000416649 CSPP1Q1MSJ5 1256 aa18.18■□□□□ 0.5
NCKIPSD-204ENST00000416649 TSR2Q969E8 191 aaKnown RBP18.18■□□□□ 0.5
NCKIPSD-204ENST00000416649 MYO5BQ9ULV0 1848 aa18.17■□□□□ 0.5
NCKIPSD-204ENST00000416649 CBX1P83916 185 aa18.17■□□□□ 0.5
NCKIPSD-204ENST00000416649 SASS6Q6UVJ0 657 aa18.17■□□□□ 0.5
NCKIPSD-204ENST00000416649 RUNDC1Q96C34 613 aa18.17■□□□□ 0.5
NCKIPSD-204ENST00000416649 AK9Q5TCS8 1911 aa18.16■□□□□ 0.5
NCKIPSD-204ENST00000416649 KIF2CQ99661 725 aa18.16■□□□□ 0.5
NCKIPSD-204ENST00000416649 KIF13AQ9H1H9 1805 aa18.16■□□□□ 0.5
NCKIPSD-204ENST00000416649 PRPF40AO75400 957 aaKnown RBP18.16■□□□□ 0.5
NCKIPSD-204ENST00000416649 HS1BP3Q53T59 392 aa18.16■□□□□ 0.5
NCKIPSD-204ENST00000416649 TRIM27P14373 513 aa18.15■□□□□ 0.5
NCKIPSD-204ENST00000416649 CCDC94Q9BW85 323 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms