RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 RGS17Q9UGC6 210 aaPredicted RBP20.6■□□□□ 0.89
CHD1-202ENST00000414220 ABTB2Q8N961 1025 aa20.59■□□□□ 0.89
CHD1-202ENST00000414220 ILDR2Q71H61 639 aa20.57■□□□□ 0.88
CHD1-202ENST00000414220 HDGFL2Q7Z4V5 671 aaPredicted RBP20.57■□□□□ 0.88
CHD1-202ENST00000414220 TESK2Q96S53 571 aa20.57■□□□□ 0.88
CHD1-202ENST00000414220 EIF4G2P78344 907 aaKnown RBP eCLIP20.56■□□□□ 0.88
CHD1-202ENST00000414220 NLRP13Q86W25 1043 aa20.56■□□□□ 0.88
CHD1-202ENST00000414220 CABLES1Q8TDN4 633 aa20.56■□□□□ 0.88
CHD1-202ENST00000414220 TERF2IPQ9NYB0 399 aa20.56■□□□□ 0.88
CHD1-202ENST00000414220 USP21Q9UK80 565 aa20.56■□□□□ 0.88
CHD1-202ENST00000414220 TOPAZ1Q8N9V7 1692 aa20.56■□□□□ 0.88
CHD1-202ENST00000414220 POTEAQ6S8J7 498 aa20.55■□□□□ 0.88
CHD1-202ENST00000414220 FNBP4Q8N3X1 1017 aaPredicted RBP20.54■□□□□ 0.88
CHD1-202ENST00000414220 RXRBP28702 533 aa20.53■□□□□ 0.88
CHD1-202ENST00000414220 QTRT2Q9H974 415 aaKnown RBP20.53■□□□□ 0.88
CHD1-202ENST00000414220 NINLQ9Y2I6 1382 aa20.52■□□□□ 0.88
CHD1-202ENST00000414220 TRPC5Q9UL62 973 aaPredicted RBP20.52■□□□□ 0.88
CHD1-202ENST00000414220 TRPM3Q9HCF6 1732 aaPredicted RBP20.52■□□□□ 0.88
CHD1-202ENST00000414220 USP6P35125 1406 aa20.52■□□□□ 0.87
CHD1-202ENST00000414220 KTN1Q86UP2 1357 aaKnown RBP20.51■□□□□ 0.87
CHD1-202ENST00000414220 NUTM2GQ5VZR2 741 aa20.51■□□□□ 0.87
CHD1-202ENST00000414220 NLRP6P59044 892 aa20.5■□□□□ 0.87
CHD1-202ENST00000414220 TTC21AQ8NDW8 1320 aa20.5■□□□□ 0.87
CHD1-202ENST00000414220 SLC12A5Q9H2X9 1139 aa20.49■□□□□ 0.87
CHD1-202ENST00000414220 RBM6P78332 1123 aaKnown RBP20.48■□□□□ 0.87
CHD1-202ENST00000414220 TTC21BQ7Z4L5 1316 aa20.48■□□□□ 0.87
CHD1-202ENST00000414220 ALS2Q96Q42 1657 aa20.48■□□□□ 0.87
CHD1-202ENST00000414220 UNC5CLQ8IV45 518 aa20.47■□□□□ 0.87
CHD1-202ENST00000414220 PRDM11Q9NQV5 511 aa20.47■□□□□ 0.87
CHD1-202ENST00000414220 CPSF1Q10570 1443 aaKnown RBP20.46■□□□□ 0.87
CHD1-202ENST00000414220 HSPA5P11021 654 aaKnown RBP20.45■□□□□ 0.86
CHD1-202ENST00000414220 FAM83GA6ND36 823 aa20.44■□□□□ 0.86
CHD1-202ENST00000414220 SOCS7O14512 581 aa20.44■□□□□ 0.86
CHD1-202ENST00000414220 KCNH5Q8NCM2 988 aa20.44■□□□□ 0.86
CHD1-202ENST00000414220 GCP02774 474 aa20.43■□□□□ 0.86
CHD1-202ENST00000414220 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.43■□□□□ 0.86
CHD1-202ENST00000414220 SSH2Q76I76 1423 aa20.43■□□□□ 0.86
CHD1-202ENST00000414220 ZC3H6P61129 1189 aaKnown RBP20.42■□□□□ 0.86
CHD1-202ENST00000414220 BTG4Q9NY30 223 aa20.42■□□□□ 0.86
CHD1-202ENST00000414220 CCDC9Q9Y3X0 531 aaKnown RBP20.42■□□□□ 0.86
CHD1-202ENST00000414220 USP19O94966 1318 aa20.42■□□□□ 0.86
CHD1-202ENST00000414220 MARF1Q9Y4F3 1742 aaKnown RBP20.41■□□□□ 0.86
CHD1-202ENST00000414220 POLR3GLQ9BT43 218 aa20.41■□□□□ 0.86
CHD1-202ENST00000414220 BCL9LQ86UU0 1499 aa20.41■□□□□ 0.86
CHD1-202ENST00000414220 SLIT2O94813 1529 aa20.41■□□□□ 0.86
CHD1-202ENST00000414220 A0A1W2PP64 1363 aa20.4■□□□□ 0.86
CHD1-202ENST00000414220 EDC4Q6P2E9 1401 aaKnown RBP20.4■□□□□ 0.86
CHD1-202ENST00000414220 KIAA0232Q92628 1395 aa20.4■□□□□ 0.86
CHD1-202ENST00000414220 GJD4Q96KN9 370 aaPredicted RBP20.4■□□□□ 0.86
CHD1-202ENST00000414220 ANKRD36BQ8N2N9 1353 aa20.39■□□□□ 0.85
CHD1-202ENST00000414220 ATRNO75882 1429 aa20.38■□□□□ 0.85
CHD1-202ENST00000414220 EVA1CP58658 441 aa20.38■□□□□ 0.85
CHD1-202ENST00000414220 VPS72Q15906 364 aa20.38■□□□□ 0.85
CHD1-202ENST00000414220 AKAP12Q02952 1782 aa20.38■□□□□ 0.85
CHD1-202ENST00000414220 CPDO75976 1380 aa20.37■□□□□ 0.85
CHD1-202ENST00000414220 ZBTB7CA1YPR0 619 aa20.37■□□□□ 0.85
CHD1-202ENST00000414220 CD163L1Q9NR16 1453 aa20.37■□□□□ 0.85
CHD1-202ENST00000414220 CDK12Q9NYV4 1490 aaPredicted RBP20.37■□□□□ 0.85
CHD1-202ENST00000414220 ABCA3Q99758 1704 aa20.36■□□□□ 0.85
CHD1-202ENST00000414220 CHRNA2Q15822 529 aa20.36■□□□□ 0.85
CHD1-202ENST00000414220 USP31Q70CQ4 1352 aa20.35■□□□□ 0.85
CHD1-202ENST00000414220 NME9Q86XW9 330 aa20.35■□□□□ 0.85
CHD1-202ENST00000414220 COL14A1Q05707 1796 aaKnown RBP20.35■□□□□ 0.85
CHD1-202ENST00000414220 COG3Q96JB2 828 aa20.34■□□□□ 0.85
CHD1-202ENST00000414220 SOX12O15370 315 aa20.33■□□□□ 0.85
CHD1-202ENST00000414220 STRN4Q9NRL3 753 aa20.33■□□□□ 0.85
CHD1-202ENST00000414220 PHRF1Q9P1Y6 1649 aaKnown RBP20.33■□□□□ 0.84
CHD1-202ENST00000414220 MON2Q7Z3U7 1717 aa20.33■□□□□ 0.84
CHD1-202ENST00000414220 NWD2Q9ULI1 1742 aa20.33■□□□□ 0.84
CHD1-202ENST00000414220 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.31■□□□□ 0.84
CHD1-202ENST00000414220 CRYBG1Q9Y4K1 1723 aa20.31■□□□□ 0.84
CHD1-202ENST00000414220 NRKQ7Z2Y5 1582 aa20.3■□□□□ 0.84
CHD1-202ENST00000414220 PIK3C2AO00443 1686 aa20.3■□□□□ 0.84
CHD1-202ENST00000414220 SLIT3O75094 1523 aa20.3■□□□□ 0.84
CHD1-202ENST00000414220 AATKQ6ZMQ8 1374 aa20.3■□□□□ 0.84
CHD1-202ENST00000414220 PLCH1Q4KWH8 1693 aa20.29■□□□□ 0.84
CHD1-202ENST00000414220 A0A0G2JS52 829 aa20.29■□□□□ 0.84
CHD1-202ENST00000414220 MYT1Q01538 1121 aa20.29■□□□□ 0.84
CHD1-202ENST00000414220 ARHGEF25Q86VW2 580 aa20.29■□□□□ 0.84
CHD1-202ENST00000414220 ZRANB1Q9UGI0 708 aa20.28■□□□□ 0.84
CHD1-202ENST00000414220 RGS12O14924 1447 aa20.27■□□□□ 0.83
CHD1-202ENST00000414220 SPATA31A5Q5VU36 1347 aa20.27■□□□□ 0.83
CHD1-202ENST00000414220 SPATA31A7Q8IWB4 1347 aa20.27■□□□□ 0.83
CHD1-202ENST00000414220 FYB1O15117 783 aa20.25■□□□□ 0.83
CHD1-202ENST00000414220 CGNL1Q0VF96 1302 aa20.25■□□□□ 0.83
CHD1-202ENST00000414220 ONECUT3O60422 494 aaPredicted RBP20.24■□□□□ 0.83
CHD1-202ENST00000414220 CSB-PGBD3P0DP91 1061 aa20.24■□□□□ 0.83
CHD1-202ENST00000414220 FAM98CQ17RN3 349 aaKnown RBP20.23■□□□□ 0.83
CHD1-202ENST00000414220 SEPT12Q8IYM1 358 aa20.23■□□□□ 0.83
CHD1-202ENST00000414220 GGNBP2Q9H3C7 697 aa20.23■□□□□ 0.83
CHD1-202ENST00000414220 USP35Q9P2H5 1018 aa20.23■□□□□ 0.83
CHD1-202ENST00000414220 THRAP3Q9Y2W1 955 aaKnown RBP20.23■□□□□ 0.83
CHD1-202ENST00000414220 SPATA31A1Q5TZJ5 1347 aa20.23■□□□□ 0.83
CHD1-202ENST00000414220 OVOS2A0A0J9YW53 1432 aa20.22■□□□□ 0.83
CHD1-202ENST00000414220 OVOS2Q6IE36 1432 aa20.22■□□□□ 0.83
CHD1-202ENST00000414220 NSD3Q9BZ95 1437 aa20.22■□□□□ 0.83
CHD1-202ENST00000414220 LARP1Q6PKG0 1096 aaKnown RBP20.22■□□□□ 0.83
CHD1-202ENST00000414220 TOM1L2Q6ZVM7 507 aa20.22■□□□□ 0.83
CHD1-202ENST00000414220 PANK3Q9H999 370 aa20.22■□□□□ 0.83
CHD1-202ENST00000414220 TCP11L2Q8N4U5 519 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms