RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 AMER1Q5JTC6 1135 aaPredicted RBP24.63■■□□□ 1.53
SDC1-203ENST00000403076 DDX17Q92841 729 aaKnown RBP24.63■■□□□ 1.53
SDC1-203ENST00000403076 MON2Q7Z3U7 1717 aa24.63■■□□□ 1.53
SDC1-203ENST00000403076 TTC21AQ8NDW8 1320 aa24.6■■□□□ 1.53
SDC1-203ENST00000403076 BRD4O60885 1362 aaPredicted RBP24.6■■□□□ 1.53
SDC1-203ENST00000403076 FYB1O15117 783 aa24.6■■□□□ 1.53
SDC1-203ENST00000403076 GGNBP2Q9H3C7 697 aa24.6■■□□□ 1.53
SDC1-203ENST00000403076 NME9Q86XW9 330 aa24.59■■□□□ 1.53
SDC1-203ENST00000403076 NPC1L1Q9UHC9 1359 aa24.58■■□□□ 1.53
SDC1-203ENST00000403076 LMOD2Q6P5Q4 547 aa24.58■■□□□ 1.53
SDC1-203ENST00000403076 SSH2Q76I76 1423 aa24.57■■□□□ 1.52
SDC1-203ENST00000403076 MORC1Q86VD1 984 aa24.57■■□□□ 1.52
SDC1-203ENST00000403076 NSD2O96028 1365 aa24.57■■□□□ 1.52
SDC1-203ENST00000403076 ABTB2Q8N961 1025 aa24.56■■□□□ 1.52
SDC1-203ENST00000403076 PRKRIP1Q9H875 184 aaPredicted RBP24.56■■□□□ 1.52
SDC1-203ENST00000403076 ROBO1Q9Y6N7 1651 aa24.55■■□□□ 1.52
SDC1-203ENST00000403076 RALBP1Q15311 655 aa24.55■■□□□ 1.52
SDC1-203ENST00000403076 COG3Q96JB2 828 aa24.55■■□□□ 1.52
SDC1-203ENST00000403076 NRKQ7Z2Y5 1582 aa24.54■■□□□ 1.52
SDC1-203ENST00000403076 NUTM2GQ5VZR2 741 aa24.54■■□□□ 1.52
SDC1-203ENST00000403076 ZRANB1Q9UGI0 708 aa24.54■■□□□ 1.52
SDC1-203ENST00000403076 NLRP6P59044 892 aa24.53■■□□□ 1.52
SDC1-203ENST00000403076 MIER1Q8N108 512 aa24.52■■□□□ 1.52
SDC1-203ENST00000403076 KIF20BQ96Q89 1820 aa24.51■■□□□ 1.51
SDC1-203ENST00000403076 SOS2Q07890 1332 aaPredicted RBP24.51■■□□□ 1.51
SDC1-203ENST00000403076 PXDNQ92626 1479 aa24.51■■□□□ 1.51
SDC1-203ENST00000403076 SBNO1A3KN83 1393 aa24.51■■□□□ 1.51
SDC1-203ENST00000403076 TNNT2P45379 298 aaPredicted RBP24.51■■□□□ 1.51
SDC1-203ENST00000403076 PARD3Q8TEW0 1356 aa24.49■■□□□ 1.51
SDC1-203ENST00000403076 NLRP13Q86W25 1043 aa24.49■■□□□ 1.51
SDC1-203ENST00000403076 NHSL1Q5SYE7 1610 aa24.48■■□□□ 1.51
SDC1-203ENST00000403076 SPATA31A3Q5VYP0 1347 aa24.47■■□□□ 1.51
SDC1-203ENST00000403076 PLEKHG5O94827 1062 aa24.47■■□□□ 1.51
SDC1-203ENST00000403076 ILDR1Q86SU0 546 aaPredicted RBP24.47■■□□□ 1.51
SDC1-203ENST00000403076 TRPM3Q9HCF6 1732 aaPredicted RBP24.47■■□□□ 1.51
SDC1-203ENST00000403076 TNS3Q68CZ2 1445 aa24.47■■□□□ 1.51
SDC1-203ENST00000403076 USP31Q70CQ4 1352 aa24.46■■□□□ 1.51
SDC1-203ENST00000403076 PIK3C2AO00443 1686 aa24.45■■□□□ 1.5
SDC1-203ENST00000403076 AHDC1Q5TGY3 1603 aaPredicted RBP24.45■■□□□ 1.5
SDC1-203ENST00000403076 LRRC59Q96AG4 307 aaKnown RBP24.45■■□□□ 1.5
SDC1-203ENST00000403076 MYBBP1AQ9BQG0 1328 aaKnown RBP24.44■■□□□ 1.5
SDC1-203ENST00000403076 SOX12O15370 315 aa24.44■■□□□ 1.5
SDC1-203ENST00000403076 ARHGEF10O15013 1369 aa24.44■■□□□ 1.5
SDC1-203ENST00000403076 OVOS2A0A0J9YW53 1432 aa24.43■■□□□ 1.5
SDC1-203ENST00000403076 OVOS2Q6IE36 1432 aa24.43■■□□□ 1.5
SDC1-203ENST00000403076 ANKRD26Q9UPS8 1709 aa24.43■■□□□ 1.5
SDC1-203ENST00000403076 PPP2R1AP30153 589 aa24.42■■□□□ 1.5
SDC1-203ENST00000403076 PHLPP1O60346 1717 aa24.4■■□□□ 1.5
SDC1-203ENST00000403076 ALS2Q96Q42 1657 aa24.39■■□□□ 1.5
SDC1-203ENST00000403076 FBLN1P23142 703 aa24.39■■□□□ 1.49
SDC1-203ENST00000403076 KCNH5Q8NCM2 988 aa24.37■■□□□ 1.49
SDC1-203ENST00000403076 HAP1P54257 671 aaPredicted RBP24.36■■□□□ 1.49
SDC1-203ENST00000403076 CCER2I3L3R5 266 aa24.35■■□□□ 1.49
SDC1-203ENST00000403076 CABLES1Q8TDN4 633 aa24.35■■□□□ 1.49
SDC1-203ENST00000403076 USP19O94966 1318 aa24.35■■□□□ 1.49
SDC1-203ENST00000403076 PPM1GO15355 546 aaPredicted RBP24.35■■□□□ 1.49
SDC1-203ENST00000403076 GCP02774 474 aa24.35■■□□□ 1.49
SDC1-203ENST00000403076 MTHFSP49914 203 aa24.35■■□□□ 1.49
SDC1-203ENST00000403076 RRS1Q15050 365 aaKnown RBP24.35■■□□□ 1.49
SDC1-203ENST00000403076 AATKQ6ZMQ8 1374 aa24.34■■□□□ 1.49
SDC1-203ENST00000403076 USP54Q70EL1 1684 aa24.34■■□□□ 1.49
SDC1-203ENST00000403076 COL16A1Q07092 1604 aaPredicted RBP24.33■■□□□ 1.49
SDC1-203ENST00000403076 ZBTB7CA1YPR0 619 aa24.33■■□□□ 1.49
SDC1-203ENST00000403076 MRS2Q9HD23 443 aa24.33■■□□□ 1.49
SDC1-203ENST00000403076 POLKQ9UBT6 870 aa24.33■■□□□ 1.49
SDC1-203ENST00000403076 EMILIN1Q9Y6C2 1016 aa24.32■■□□□ 1.48
SDC1-203ENST00000403076 MARF1Q9Y4F3 1742 aaKnown RBP24.31■■□□□ 1.48
SDC1-203ENST00000403076 HSPA1LP34931 641 aa24.3■■□□□ 1.48
SDC1-203ENST00000403076 CFAP53Q96M91 514 aa24.3■■□□□ 1.48
SDC1-203ENST00000403076 MED1Q15648 1581 aaPredicted RBP24.3■■□□□ 1.48
SDC1-203ENST00000403076 PNPLA6Q8IY17 1366 aa24.3■■□□□ 1.48
SDC1-203ENST00000403076 CCDC184Q52MB2 194 aa24.3■■□□□ 1.48
SDC1-203ENST00000403076 SLIT3O75094 1523 aa24.29■■□□□ 1.48
SDC1-203ENST00000403076 AMPHP49418 695 aa24.29■■□□□ 1.48
SDC1-203ENST00000403076 ZC3H6P61129 1189 aaKnown RBP24.29■■□□□ 1.48
SDC1-203ENST00000403076 MAP3K19Q56UN5 1328 aa24.28■■□□□ 1.48
SDC1-203ENST00000403076 MAP2P11137 1827 aaKnown RBP24.28■■□□□ 1.48
SDC1-203ENST00000403076 NFAT5O94916 1531 aa24.25■■□□□ 1.47
SDC1-203ENST00000403076 JCADQ9P266 1359 aa24.24■■□□□ 1.47
SDC1-203ENST00000403076 ARHGEF25Q86VW2 580 aa24.24■■□□□ 1.47
SDC1-203ENST00000403076 PHRF1Q9P1Y6 1649 aaKnown RBP24.23■■□□□ 1.47
SDC1-203ENST00000403076 NUTM2BA6NNL0 878 aaPredicted RBP24.22■■□□□ 1.47
SDC1-203ENST00000403076 NUTM2EB1AL46 878 aaPredicted RBP24.22■■□□□ 1.47
SDC1-203ENST00000403076 NUTM2AQ8IVF1 878 aaPredicted RBP24.22■■□□□ 1.47
SDC1-203ENST00000403076 SMG6Q86US8 1419 aaKnown RBP24.21■■□□□ 1.47
SDC1-203ENST00000403076 FLT4P35916 1363 aa24.21■■□□□ 1.47
SDC1-203ENST00000403076 CRYBG1Q9Y4K1 1723 aa24.21■■□□□ 1.47
SDC1-203ENST00000403076 FBXO41Q8TF61 875 aa24.2■■□□□ 1.47
SDC1-203ENST00000403076 PRDM11Q9NQV5 511 aa24.2■■□□□ 1.47
SDC1-203ENST00000403076 COL22A1Q8NFW1 1626 aaPredicted RBP24.2■■□□□ 1.46
SDC1-203ENST00000403076 CDK12Q9NYV4 1490 aaPredicted RBP24.2■■□□□ 1.46
SDC1-203ENST00000403076 KIF24Q5T7B8 1368 aa24.2■■□□□ 1.46
SDC1-203ENST00000403076 KIAA0232Q92628 1395 aa24.2■■□□□ 1.46
SDC1-203ENST00000403076 HOXC9P31274 260 aa24.2■■□□□ 1.46
SDC1-203ENST00000403076 HSP90AB2PQ58FF8 381 aa24.2■■□□□ 1.46
SDC1-203ENST00000403076 IP6K1Q92551 441 aa24.2■■□□□ 1.46
SDC1-203ENST00000403076 DIAPH1O60610 1272 aaKnown RBP24.19■■□□□ 1.46
SDC1-203ENST00000403076 CHRNA2Q15822 529 aa24.19■■□□□ 1.46
SDC1-203ENST00000403076 RTL1A6NKG5 1358 aa24.18■■□□□ 1.46
SDC1-203ENST00000403076 NUDCQ9Y266 331 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms