RNA–Protein interactions for RNA: ENST00000398868.7

ATL3-201, Transcript of atlastin GTPase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ATL3, Length 7,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-201ENST00000398868 ZKSCAN1P17029 563 aaPredicted RBP11.25□□□□□ -0.61
ATL3-201ENST00000398868 FMNL2Q96PY5 1086 aa11.25□□□□□ -0.61
ATL3-201ENST00000398868 WDR78Q5VTH9 848 aa11.25□□□□□ -0.61
ATL3-201ENST00000398868 SURF6O75683 361 aaKnown RBP11.24□□□□□ -0.61
ATL3-201ENST00000398868 PLCD3Q8N3E9 789 aa11.24□□□□□ -0.61
ATL3-201ENST00000398868 CHMP4AQ9BY43 222 aa11.24□□□□□ -0.61
ATL3-201ENST00000398868 FANCD2Q9BXW9 1451 aa11.23□□□□□ -0.61
ATL3-201ENST00000398868 TSPYL1Q9H0U9 437 aa11.23□□□□□ -0.61
ATL3-201ENST00000398868 CEBPAP49715 358 aaPredicted RBP11.23□□□□□ -0.61
ATL3-201ENST00000398868 NUP133Q8WUM0 1156 aa11.23□□□□□ -0.61
ATL3-201ENST00000398868 CPLX2Q6PUV4 134 aaKnown RBP11.23□□□□□ -0.61
ATL3-201ENST00000398868 SULT6B1Q6IMI4 303 aa11.23□□□□□ -0.61
ATL3-201ENST00000398868 CENPQQ7L2Z9 268 aaPredicted RBP11.23□□□□□ -0.61
ATL3-201ENST00000398868 DZIP1LQ8IYY4 767 aaKnown RBP11.23□□□□□ -0.61
ATL3-201ENST00000398868 TTC16Q8NEE8 873 aa11.23□□□□□ -0.61
ATL3-201ENST00000398868 ZNF526Q8TF50 670 aaPredicted RBP11.23□□□□□ -0.61
ATL3-201ENST00000398868 KIF3AQ9Y496 699 aa11.23□□□□□ -0.61
ATL3-201ENST00000398868 MATR3P43243 847 aaKnown RBP eCLIP11.22□□□□□ -0.61
ATL3-201ENST00000398868 PRDM11Q9NQV5 511 aa11.22□□□□□ -0.61
ATL3-201ENST00000398868 GPRASP1Q5JY77 1395 aa11.22□□□□□ -0.61
ATL3-201ENST00000398868 HSP90B2PQ58FF3 399 aa11.22□□□□□ -0.61
ATL3-201ENST00000398868 ARHGAP5Q13017 1502 aa11.22□□□□□ -0.61
ATL3-201ENST00000398868 USP5P45974 858 aa11.22□□□□□ -0.61
ATL3-201ENST00000398868 SASS6Q6UVJ0 657 aa11.22□□□□□ -0.61
ATL3-201ENST00000398868 PRKAR2BP31323 418 aa11.21□□□□□ -0.61
ATL3-201ENST00000398868 HSP90AB2PQ58FF8 381 aa11.21□□□□□ -0.61
ATL3-201ENST00000398868 TRERF1Q96PN7 1200 aa11.21□□□□□ -0.61
ATL3-201ENST00000398868 CABP1Q9NZU7 370 aa11.21□□□□□ -0.61
ATL3-201ENST00000398868 RUFY2Q8WXA3 655 aa11.21□□□□□ -0.61
ATL3-201ENST00000398868 CDK19Q9BWU1 502 aa11.21□□□□□ -0.61
ATL3-201ENST00000398868 ARGLU1Q9NWB6 273 aaPredicted RBP11.21□□□□□ -0.61
ATL3-201ENST00000398868 E9PSI1 815 aa11.21□□□□□ -0.61
ATL3-201ENST00000398868 MPRIPQ6WCQ1 1025 aa11.21□□□□□ -0.61
ATL3-201ENST00000398868 RRP1P56182 461 aaKnown RBP11.21□□□□□ -0.62
ATL3-201ENST00000398868 SMC3Q9UQE7 1217 aa11.21□□□□□ -0.62
ATL3-201ENST00000398868 CAVIN1Q6NZI2 390 aaKnown RBP11.21□□□□□ -0.62
ATL3-201ENST00000398868 CAGE1Q8TC20 777 aa11.21□□□□□ -0.62
ATL3-201ENST00000398868 CDCA7LQ96GN5 454 aa11.21□□□□□ -0.62
ATL3-201ENST00000398868 TATP17735 454 aaPredicted RBP11.2□□□□□ -0.62
ATL3-201ENST00000398868 CCDC191Q8NCU4 936 aa11.2□□□□□ -0.62
ATL3-201ENST00000398868 CWC15Q9P013 229 aaKnown RBP11.2□□□□□ -0.62
ATL3-201ENST00000398868 SLC12A5Q9H2X9 1139 aa11.2□□□□□ -0.62
ATL3-201ENST00000398868 CCDC66A2RUB6 948 aa11.2□□□□□ -0.62
ATL3-201ENST00000398868 CADPSQ9ULU8 1353 aa11.2□□□□□ -0.62
ATL3-201ENST00000398868 KRT18P05783 430 aaKnown RBP11.19□□□□□ -0.62
ATL3-201ENST00000398868 CHMP5Q9NZZ3 219 aa11.19□□□□□ -0.62
ATL3-201ENST00000398868 UQCRHLA0A096LP55 91 aa11.19□□□□□ -0.62
ATL3-201ENST00000398868 UQCRHP07919 91 aa11.19□□□□□ -0.62
ATL3-201ENST00000398868 LRRFIP1Q32MZ4 808 aaKnown RBP11.19□□□□□ -0.62
ATL3-201ENST00000398868 CENPHQ9H3R5 247 aa11.19□□□□□ -0.62
ATL3-201ENST00000398868 IPO7O95373 1038 aaKnown RBP11.19□□□□□ -0.62
ATL3-201ENST00000398868 AXDND1Q5T1B0 1012 aaPredicted RBP11.19□□□□□ -0.62
ATL3-201ENST00000398868 MPHOSPH8Q99549 860 aa11.19□□□□□ -0.62
ATL3-201ENST00000398868 NBPF1Q3BBV0 1214 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 SLC4A2P04920 1241 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 ABCF2Q9UG63 623 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 DHX57Q6P158 1386 aaKnown RBP11.18□□□□□ -0.62
ATL3-201ENST00000398868 WAPLQ7Z5K2 1190 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 FAM177A1Q8N128 213 aaPredicted RBP11.18□□□□□ -0.62
ATL3-201ENST00000398868 JARID2Q92833 1246 aaPredicted RBP11.18□□□□□ -0.62
ATL3-201ENST00000398868 CCDC39Q9UFE4 941 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 LEKR1Q6ZMV7 388 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 RUNDC1Q96C34 613 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 DCTN1Q14203 1278 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 SAFBQ15424 915 aaKnown RBP eCLIP11.18□□□□□ -0.62
ATL3-201ENST00000398868 ZNF530Q6P9A1 599 aaPredicted RBP11.18□□□□□ -0.62
ATL3-201ENST00000398868 NGLY1Q96IV0 654 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 TRAK2O60296 914 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 SSBP05455 408 aaKnown RBP eCLIP11.18□□□□□ -0.62
ATL3-201ENST00000398868 CCDC47Q96A33 483 aaKnown RBP11.18□□□□□ -0.62
ATL3-201ENST00000398868 CDK5RAP3Q96JB5 506 aa11.18□□□□□ -0.62
ATL3-201ENST00000398868 ADAMTS8Q9UP79 889 aa11.17□□□□□ -0.62
ATL3-201ENST00000398868 BCAR3O75815 825 aa11.17□□□□□ -0.62
ATL3-201ENST00000398868 WWC2Q6AWC2 1192 aa11.17□□□□□ -0.62
ATL3-201ENST00000398868 TBC1D2BQ9UPU7 963 aa11.17□□□□□ -0.62
ATL3-201ENST00000398868 CA8P35219 290 aa11.17□□□□□ -0.62
ATL3-201ENST00000398868 FAM193AP78312 1265 aa11.17□□□□□ -0.62
ATL3-201ENST00000398868 SPDYE4A6NLX3 237 aa11.17□□□□□ -0.62
ATL3-201ENST00000398868 UACAQ9BZF9 1416 aa11.17□□□□□ -0.62
ATL3-201ENST00000398868 OFD1O75665 1012 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 ATP6V1DQ9Y5K8 247 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 NOB1Q9ULX3 412 aaKnown RBP11.16□□□□□ -0.62
ATL3-201ENST00000398868 CBX1P83916 185 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 RNF20Q5VTR2 975 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 THUMPD2Q9BTF0 503 aaKnown RBP11.16□□□□□ -0.62
ATL3-201ENST00000398868 BTBD11A6QL63 1104 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 LIG1P18858 919 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 PLEKHO1Q53GL0 409 aaPredicted RBP11.16□□□□□ -0.62
ATL3-201ENST00000398868 GPATCH11Q8N954 259 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 PPFIA3O75145 1194 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 DDX19BQ9UMR2 479 aa11.16□□□□□ -0.62
ATL3-201ENST00000398868 ACSBG1Q96GR2 724 aa11.15□□□□□ -0.62
ATL3-201ENST00000398868 SMC2O95347 1197 aa11.15□□□□□ -0.62
ATL3-201ENST00000398868 EXOSC9Q06265 439 aaKnown RBP11.15□□□□□ -0.62
ATL3-201ENST00000398868 HDGFL1Q5TGJ6 251 aa11.15□□□□□ -0.62
ATL3-201ENST00000398868 RAI14Q9P0K7 980 aa11.15□□□□□ -0.62
ATL3-201ENST00000398868 ANKIB1Q9P2G1 1089 aa11.15□□□□□ -0.62
ATL3-201ENST00000398868 RSPH4AQ5TD94 716 aa11.15□□□□□ -0.62
ATL3-201ENST00000398868 CCDC82Q8N4S0 544 aa11.15□□□□□ -0.62
ATL3-201ENST00000398868 ACBD3Q9H3P7 528 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms