RNA–Protein interactions for RNA: ENST00000396653.2

AP1S3-202, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 4 BASIC

Gene AP1S3, Length 589 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-202ENST00000396653 SSH2Q76I76 1423 aa22.79■■□□□ 1.24
AP1S3-202ENST00000396653 KTN1Q86UP2 1357 aaKnown RBP22.77■■□□□ 1.24
AP1S3-202ENST00000396653 JCADQ9P266 1359 aa22.77■■□□□ 1.24
AP1S3-202ENST00000396653 XPCQ01831 940 aaPredicted RBP22.77■■□□□ 1.24
AP1S3-202ENST00000396653 ILDR1Q86SU0 546 aaPredicted RBP22.77■■□□□ 1.24
AP1S3-202ENST00000396653 SPATA31A3Q5VYP0 1347 aa22.77■■□□□ 1.24
AP1S3-202ENST00000396653 WASHC2AQ641Q2 1341 aa22.77■■□□□ 1.24
AP1S3-202ENST00000396653 EDC4Q6P2E9 1401 aaKnown RBP22.76■■□□□ 1.23
AP1S3-202ENST00000396653 MED1Q15648 1581 aaPredicted RBP22.76■■□□□ 1.23
AP1S3-202ENST00000396653 ARHGEF10O15013 1369 aa22.76■■□□□ 1.23
AP1S3-202ENST00000396653 USP54Q70EL1 1684 aa22.75■■□□□ 1.23
AP1S3-202ENST00000396653 POLR3GLQ9BT43 218 aa22.75■■□□□ 1.23
AP1S3-202ENST00000396653 PIK3C2AO00443 1686 aa22.74■■□□□ 1.23
AP1S3-202ENST00000396653 PNPLA6Q8IY17 1366 aa22.74■■□□□ 1.23
AP1S3-202ENST00000396653 CRYBG1Q9Y4K1 1723 aa22.74■■□□□ 1.23
AP1S3-202ENST00000396653 TTC21AQ8NDW8 1320 aa22.73■■□□□ 1.23
AP1S3-202ENST00000396653 ABCA3Q99758 1704 aa22.73■■□□□ 1.23
AP1S3-202ENST00000396653 KIF20BQ96Q89 1820 aa22.72■■□□□ 1.23
AP1S3-202ENST00000396653 TTC21BQ7Z4L5 1316 aa22.7■■□□□ 1.22
AP1S3-202ENST00000396653 MARF1Q9Y4F3 1742 aaKnown RBP22.69■■□□□ 1.22
AP1S3-202ENST00000396653 PHRF1Q9P1Y6 1649 aaKnown RBP22.69■■□□□ 1.22
AP1S3-202ENST00000396653 SPATA31A6Q5VVP1 1343 aa22.68■■□□□ 1.22
AP1S3-202ENST00000396653 PAK3O75914 559 aaPredicted RBP22.68■■□□□ 1.22
AP1S3-202ENST00000396653 NSD3Q9BZ95 1437 aa22.66■■□□□ 1.22
AP1S3-202ENST00000396653 ANKRD26Q9UPS8 1709 aa22.65■■□□□ 1.22
AP1S3-202ENST00000396653 USP31Q70CQ4 1352 aa22.64■■□□□ 1.22
AP1S3-202ENST00000396653 SLIT3O75094 1523 aa22.64■■□□□ 1.21
AP1S3-202ENST00000396653 ABTB2Q8N961 1025 aa22.64■■□□□ 1.21
AP1S3-202ENST00000396653 PANK3Q9H999 370 aa22.64■■□□□ 1.21
AP1S3-202ENST00000396653 LMOD2Q6P5Q4 547 aa22.63■■□□□ 1.21
AP1S3-202ENST00000396653 CARD14Q9BXL6 1004 aa22.63■■□□□ 1.21
AP1S3-202ENST00000396653 USP19O94966 1318 aa22.62■■□□□ 1.21
AP1S3-202ENST00000396653 OVOS2A0A0J9YW53 1432 aa22.62■■□□□ 1.21
AP1S3-202ENST00000396653 OVOS2Q6IE36 1432 aa22.62■■□□□ 1.21
AP1S3-202ENST00000396653 NLRP13Q86W25 1043 aa22.61■■□□□ 1.21
AP1S3-202ENST00000396653 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.61■■□□□ 1.21
AP1S3-202ENST00000396653 ZNF316A6NFI3 1004 aaPredicted RBP22.6■■□□□ 1.21
AP1S3-202ENST00000396653 LRP6O75581 1613 aa22.59■■□□□ 1.21
AP1S3-202ENST00000396653 CGNL1Q0VF96 1302 aa22.58■■□□□ 1.21
AP1S3-202ENST00000396653 NLRP6P59044 892 aa22.58■■□□□ 1.21
AP1S3-202ENST00000396653 NME9Q86XW9 330 aa22.58■■□□□ 1.21
AP1S3-202ENST00000396653 NSD2O96028 1365 aa22.58■■□□□ 1.21
AP1S3-202ENST00000396653 FYB1O15117 783 aa22.55■■□□□ 1.2
AP1S3-202ENST00000396653 NUTM2GQ5VZR2 741 aa22.55■■□□□ 1.2
AP1S3-202ENST00000396653 KNSTRNQ9Y448 316 aa22.55■■□□□ 1.2
AP1S3-202ENST00000396653 NFAT5O94916 1531 aa22.54■■□□□ 1.2
AP1S3-202ENST00000396653 PER1O15534 1290 aaPredicted RBP22.54■■□□□ 1.2
AP1S3-202ENST00000396653 NPC1L1Q9UHC9 1359 aa22.53■■□□□ 1.2
AP1S3-202ENST00000396653 HAP1P54257 671 aaPredicted RBP22.52■■□□□ 1.2
AP1S3-202ENST00000396653 KCNH5Q8NCM2 988 aa22.52■■□□□ 1.2
AP1S3-202ENST00000396653 CABLES1Q8TDN4 633 aa22.52■■□□□ 1.2
AP1S3-202ENST00000396653 COG3Q96JB2 828 aa22.52■■□□□ 1.2
AP1S3-202ENST00000396653 COL14A1Q05707 1796 aaKnown RBP22.51■■□□□ 1.19
AP1S3-202ENST00000396653 ZRANB1Q9UGI0 708 aa22.51■■□□□ 1.19
AP1S3-202ENST00000396653 CPDO75976 1380 aa22.5■■□□□ 1.19
AP1S3-202ENST00000396653 LTN1O94822 1766 aa22.5■■□□□ 1.19
AP1S3-202ENST00000396653 NUTM2BA6NNL0 878 aaPredicted RBP22.5■■□□□ 1.19
AP1S3-202ENST00000396653 NUTM2EB1AL46 878 aaPredicted RBP22.5■■□□□ 1.19
AP1S3-202ENST00000396653 GCP02774 474 aa22.5■■□□□ 1.19
AP1S3-202ENST00000396653 NUTM2AQ8IVF1 878 aaPredicted RBP22.5■■□□□ 1.19
AP1S3-202ENST00000396653 GGNBP2Q9H3C7 697 aa22.5■■□□□ 1.19
AP1S3-202ENST00000396653 PLCH1Q4KWH8 1693 aa22.49■■□□□ 1.19
AP1S3-202ENST00000396653 NWD2Q9ULI1 1742 aa22.49■■□□□ 1.19
AP1S3-202ENST00000396653 ABCC6O95255 1503 aa22.49■■□□□ 1.19
AP1S3-202ENST00000396653 AMER1Q5JTC6 1135 aaPredicted RBP22.49■■□□□ 1.19
AP1S3-202ENST00000396653 LMO7Q8WWI1 1683 aa22.46■■□□□ 1.19
AP1S3-202ENST00000396653 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.46■■□□□ 1.19
AP1S3-202ENST00000396653 DDX10Q13206 875 aaKnown RBP22.46■■□□□ 1.19
AP1S3-202ENST00000396653 COL18A1P39060 1754 aa22.45■■□□□ 1.19
AP1S3-202ENST00000396653 PLEKHG5O94827 1062 aa22.45■■□□□ 1.18
AP1S3-202ENST00000396653 MEX3CQ5U5Q3 659 aaKnown RBP22.45■■□□□ 1.18
AP1S3-202ENST00000396653 KIAA0232Q92628 1395 aa22.45■■□□□ 1.18
AP1S3-202ENST00000396653 ADAMTS2O95450 1211 aa22.44■■□□□ 1.18
AP1S3-202ENST00000396653 MAP2P11137 1827 aaKnown RBP22.44■■□□□ 1.18
AP1S3-202ENST00000396653 NRAPQ86VF7 1730 aa22.43■■□□□ 1.18
AP1S3-202ENST00000396653 SLIT2O94813 1529 aa22.43■■□□□ 1.18
AP1S3-202ENST00000396653 AATKQ6ZMQ8 1374 aa22.43■■□□□ 1.18
AP1S3-202ENST00000396653 ZC3H6P61129 1189 aaKnown RBP22.41■■□□□ 1.18
AP1S3-202ENST00000396653 ARHGEF25Q86VW2 580 aa22.41■■□□□ 1.18
AP1S3-202ENST00000396653 PRDM11Q9NQV5 511 aa22.41■■□□□ 1.18
AP1S3-202ENST00000396653 KIF24Q5T7B8 1368 aa22.39■■□□□ 1.18
AP1S3-202ENST00000396653 C8orf37Q96NL8 207 aa22.39■■□□□ 1.17
AP1S3-202ENST00000396653 RGPD5Q99666 1765 aa22.39■■□□□ 1.17
AP1S3-202ENST00000396653 RTL1A6NKG5 1358 aa22.38■■□□□ 1.17
AP1S3-202ENST00000396653 SOX12O15370 315 aa22.38■■□□□ 1.17
AP1S3-202ENST00000396653 MORC1Q86VD1 984 aa22.38■■□□□ 1.17
AP1S3-202ENST00000396653 FNBP4Q8N3X1 1017 aaPredicted RBP22.38■■□□□ 1.17
AP1S3-202ENST00000396653 PEAK1Q9H792 1746 aa22.37■■□□□ 1.17
AP1S3-202ENST00000396653 FAM83GA6ND36 823 aa22.37■■□□□ 1.17
AP1S3-202ENST00000396653 CC2D1BQ5T0F9 858 aaKnown RBP22.37■■□□□ 1.17
AP1S3-202ENST00000396653 NGLY1Q96IV0 654 aa22.37■■□□□ 1.17
AP1S3-202ENST00000396653 SMG6Q86US8 1419 aaKnown RBP22.37■■□□□ 1.17
AP1S3-202ENST00000396653 CAMTA1Q9Y6Y1 1673 aa22.36■■□□□ 1.17
AP1S3-202ENST00000396653 MAP3K19Q56UN5 1328 aa22.35■■□□□ 1.17
AP1S3-202ENST00000396653 BLMP54132 1417 aaPredicted RBP22.35■■□□□ 1.17
AP1S3-202ENST00000396653 FAM208AQ9UK61 1670 aaKnown RBP22.35■■□□□ 1.17
AP1S3-202ENST00000396653 AFF2P51816 1311 aa22.34■■□□□ 1.17
AP1S3-202ENST00000396653 CHRNA2Q15822 529 aa22.34■■□□□ 1.17
AP1S3-202ENST00000396653 BCL9LQ86UU0 1499 aa22.34■■□□□ 1.17
AP1S3-202ENST00000396653 PARD3Q8TEW0 1356 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms