RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 XBP1P17861 261 aa12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 WASHC4Q2M389 1173 aa12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 FGD5Q6ZNL6 1462 aa12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 SURF6O75683 361 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 DHX8Q14562 1220 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 CCDC30Q5VVM6 783 aa12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 AKNAQ7Z591 1439 aa12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 NAP1L1P55209 391 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 TRIM34Q9BYJ4 488 aa12.25□□□□□ -0.45
LIMCH1-203ENST00000396595 PDILTQ8N807 584 aa12.24□□□□□ -0.45
LIMCH1-203ENST00000396595 PSME1Q06323 249 aa12.24□□□□□ -0.45
LIMCH1-203ENST00000396595 CCDC27Q2M243 656 aa12.24□□□□□ -0.45
LIMCH1-203ENST00000396595 PNISRQ8TF01 805 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-203ENST00000396595 RAPGEF4Q8WZA2 1011 aa12.24□□□□□ -0.45
LIMCH1-203ENST00000396595 CIZ1Q9ULV3 898 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-203ENST00000396595 CABP2Q9NPB3 220 aa12.24□□□□□ -0.45
LIMCH1-203ENST00000396595 GAS2L2Q8NHY3 880 aa12.23□□□□□ -0.45
LIMCH1-203ENST00000396595 WWC1Q8IX03 1113 aa12.23□□□□□ -0.45
LIMCH1-203ENST00000396595 FIBPO43427 364 aa12.23□□□□□ -0.45
LIMCH1-203ENST00000396595 ZRSR2Q15696 482 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-203ENST00000396595 TWISTNBQ3B726 338 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-203ENST00000396595 ZNF396Q96N95 335 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-203ENST00000396595 HFM1A2PYH4 1435 aa12.23□□□□□ -0.45
LIMCH1-203ENST00000396595 K7ELQ4 463 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-203ENST00000396595 IL27Q8NEV9 243 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 GRPEL1Q9HAV7 217 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 INCENPQ9NQS7 918 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 PRKAR2BP31323 418 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 ERC1Q8IUD2 1116 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 OFD1O75665 1012 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 SMC2O95347 1197 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 WDR33Q9C0J8 1336 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 RAD21O60216 631 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 GNAI2P04899 355 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 WDR63Q8IWG1 891 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 CCDC192P0DO97 292 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 FILIP1LQ4L180 1135 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 CAGE1Q8TC20 777 aa12.22□□□□□ -0.45
LIMCH1-203ENST00000396595 BCAR3O75815 825 aa12.21□□□□□ -0.45
LIMCH1-203ENST00000396595 SART3Q15020 963 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-203ENST00000396595 SMARCE1Q969G3 411 aa12.21□□□□□ -0.45
LIMCH1-203ENST00000396595 AIMP1Q12904 312 aaKnown RBP12.21□□□□□ -0.46
LIMCH1-203ENST00000396595 CTDP1Q9Y5B0 961 aaPredicted RBP12.21□□□□□ -0.46
LIMCH1-203ENST00000396595 KIAA0754O94854 1291 aa12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 NOB1Q9ULX3 412 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 MCM4P33991 863 aa12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 PIP4K2AP48426 406 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 CFAP70Q5T0N1 1121 aa12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 CCDC43Q96MW1 224 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 STK38Q15208 465 aa12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 TMEM132EQ6IEE7 984 aa12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 JMYQ8N9B5 988 aa12.2□□□□□ -0.46
LIMCH1-203ENST00000396595 MVPQ14764 893 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 ANKRD1Q15327 319 aa12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 CT47A1Q5JQC4 288 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 ATF7IPQ6VMQ6 1270 aa12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 FBXO3Q9UK99 471 aa12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 CYP46A1Q9Y6A2 500 aa12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 GPATCH11Q8N954 259 aa12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 TBC1D2BQ9UPU7 963 aa12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 ERICH3Q5RHP9 1530 aa12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 CCT4P50991 539 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 C1orf115Q9H7X2 142 aa12.19□□□□□ -0.46
LIMCH1-203ENST00000396595 KIAA1107Q9UPP5 1409 aa12.18□□□□□ -0.46
LIMCH1-203ENST00000396595 KRT85P78386 507 aa12.18□□□□□ -0.46
LIMCH1-203ENST00000396595 FMNL2Q96PY5 1086 aa12.18□□□□□ -0.46
LIMCH1-203ENST00000396595 MYO6Q9UM54 1294 aa12.18□□□□□ -0.46
LIMCH1-203ENST00000396595 EPS15P42566 896 aa12.18□□□□□ -0.46
LIMCH1-203ENST00000396595 ESPNB1AK53 854 aa12.18□□□□□ -0.46
LIMCH1-203ENST00000396595 CCDC112Q8NEF3 446 aa12.18□□□□□ -0.46
LIMCH1-203ENST00000396595 BBXQ8WY36 941 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 TSR2Q969E8 191 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 NLRP6P59044 892 aa12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 SPC24Q8NBT2 197 aa12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 BCL11BQ9C0K0 894 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 GOLGA6L7A0A1B0GV03 622 aa12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 NBPF8Q3BBV2 869 aa12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 TNMDQ9H2S6 317 aa12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 TXLNAP40222 546 aa12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 CHD1LQ86WJ1 897 aa12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 LRRCC1Q9C099 1032 aa12.17□□□□□ -0.46
LIMCH1-203ENST00000396595 SRCIN1Q9C0H9 1055 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 ARAP1Q96P48 1450 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 IRX3P78415 501 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 NBPF1Q3BBV0 1214 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 ZNF428Q96B54 188 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 DNAJC2Q99543 621 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 TTLL5Q6EMB2 1281 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 SYTL4Q96C24 671 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 ZMYND15Q9H091 742 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 RAD54L2Q9Y4B4 1467 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 ODF2Q5BJF6 829 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 NLRP2Q9NX02 1062 aa12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 MAGEC2Q9UBF1 373 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-203ENST00000396595 PDIA4P13667 645 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-203ENST00000396595 RBM33Q96EV2 1170 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-203ENST00000396595 SLC4A2P04920 1241 aa12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 ATP2B1P20020 1258 aa12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 PLEKHO1Q53GL0 409 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 DACH1Q9UI36 760 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms