RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 ACEP12821 1306 aa15.18■□□□□ 0.02
SMARCAL1-203ENST00000392128 MAP2P11137 1827 aaKnown RBP15.18■□□□□ 0.02
SMARCAL1-203ENST00000392128 USP6P35125 1406 aa15.18■□□□□ 0.02
SMARCAL1-203ENST00000392128 NGEFQ8N5V2 710 aa15.17■□□□□ 0.02
SMARCAL1-203ENST00000392128 PNPLA6Q8IY17 1366 aa15.17■□□□□ 0.02
SMARCAL1-203ENST00000392128 ZNF521Q96K83 1311 aa15.17■□□□□ 0.02
SMARCAL1-203ENST00000392128 NME9Q86XW9 330 aa15.16■□□□□ 0.02
SMARCAL1-203ENST00000392128 CCDC146Q8IYE0 955 aa15.16■□□□□ 0.02
SMARCAL1-203ENST00000392128 AATKQ6ZMQ8 1374 aa15.16■□□□□ 0.02
SMARCAL1-203ENST00000392128 SSH2Q76I76 1423 aa15.16■□□□□ 0.02
SMARCAL1-203ENST00000392128 NUTM2FA1L443 756 aa15.16■□□□□ 0.02
SMARCAL1-203ENST00000392128 ADGRL3Q9HAR2 1447 aa15.15■□□□□ 0.02
SMARCAL1-203ENST00000392128 TTC21BQ7Z4L5 1316 aa15.15■□□□□ 0.02
SMARCAL1-203ENST00000392128 IQSEC2Q5JU85 1478 aa15.14■□□□□ 0.01
SMARCAL1-203ENST00000392128 PRKCSHP14314 528 aaPredicted RBP15.14■□□□□ 0.01
SMARCAL1-203ENST00000392128 COG3Q96JB2 828 aa15.14■□□□□ 0.01
SMARCAL1-203ENST00000392128 APAF1O14727 1248 aa15.14■□□□□ 0.01
SMARCAL1-203ENST00000392128 RNF123Q5XPI4 1314 aa15.13■□□□□ 0.01
SMARCAL1-203ENST00000392128 RUNDC1Q96C34 613 aa15.13■□□□□ 0.01
SMARCAL1-203ENST00000392128 OVOS2A0A0J9YW53 1432 aa15.13■□□□□ 0.01
SMARCAL1-203ENST00000392128 OVOS2Q6IE36 1432 aa15.13■□□□□ 0.01
SMARCAL1-203ENST00000392128 CDCA7LQ96GN5 454 aa15.13■□□□□ 0.01
SMARCAL1-203ENST00000392128 POLKQ9UBT6 870 aa15.13■□□□□ 0.01
SMARCAL1-203ENST00000392128 CDK12Q9NYV4 1490 aaPredicted RBP15.13■□□□□ 0.01
SMARCAL1-203ENST00000392128 TTC21AQ8NDW8 1320 aa15.12■□□□□ 0.01
SMARCAL1-203ENST00000392128 ERICH6BQ5W0A0 696 aa15.12■□□□□ 0.01
SMARCAL1-203ENST00000392128 ZRANB1Q9UGI0 708 aa15.12■□□□□ 0.01
SMARCAL1-203ENST00000392128 PMFBP1Q8TBY8 1022 aa15.11■□□□□ 0.01
SMARCAL1-203ENST00000392128 DIAPH1O60610 1272 aaKnown RBP15.1■□□□□ 0.01
SMARCAL1-203ENST00000392128 U2AF1L5P0DN76 240 aaPredicted RBP15.1■□□□□ 0.01
SMARCAL1-203ENST00000392128 U2AF1Q01081 240 aaKnown RBP eCLIP15.1■□□□□ 0.01
SMARCAL1-203ENST00000392128 GOLGA2Q08379 1002 aa15.1■□□□□ 0.01
SMARCAL1-203ENST00000392128 NCBP3Q53F19 620 aaKnown RBP15.1■□□□□ 0.01
SMARCAL1-203ENST00000392128 NGDNQ8NEJ9 315 aaKnown RBP15.1■□□□□ 0.01
SMARCAL1-203ENST00000392128 USP54Q70EL1 1684 aa15.09■□□□□ 0.01
SMARCAL1-203ENST00000392128 USP31Q70CQ4 1352 aa15.09■□□□□ 0.01
SMARCAL1-203ENST00000392128 PIK3C2AO00443 1686 aa15.09■□□□□ 0.01
SMARCAL1-203ENST00000392128 KDM4FA0A1W2PPD8 638 aa15.08■□□□□ 0.01
SMARCAL1-203ENST00000392128 FBLN1P23142 703 aa15.07■□□□□ 0
SMARCAL1-203ENST00000392128 TCP11L2Q8N4U5 519 aa15.07■□□□□ 0
SMARCAL1-203ENST00000392128 RCAN3Q9UKA8 241 aa15.07■□□□□ 0
SMARCAL1-203ENST00000392128 EMILIN1Q9Y6C2 1016 aa15.07■□□□□ 0
SMARCAL1-203ENST00000392128 LRRC7Q96NW7 1537 aa15.06■□□□□ 0
SMARCAL1-203ENST00000392128 U2SURPO15042 1029 aaKnown RBP15.06■□□□□ 0
SMARCAL1-203ENST00000392128 SLFN5Q08AF3 891 aa15.06■□□□□ 0
SMARCAL1-203ENST00000392128 DUSP27Q5VZP5 1158 aa15.06■□□□□ 0
SMARCAL1-203ENST00000392128 PHF23Q9BUL5 403 aaPredicted RBP15.06■□□□□ 0
SMARCAL1-203ENST00000392128 LMTK3Q96Q04 1460 aa15.06■□□□□ 0
SMARCAL1-203ENST00000392128 IRX6P78412 446 aaPredicted RBP15.06■□□□□ 0
SMARCAL1-203ENST00000392128 CCDC27Q2M243 656 aa15.06■□□□□ 0
SMARCAL1-203ENST00000392128 TRMT2AQ8IZ69 625 aaKnown RBP15.06■□□□□ 0
SMARCAL1-203ENST00000392128 PLEKHF1Q96S99 279 aa15.06■□□□□ 0
SMARCAL1-203ENST00000392128 STRCP1A6NGW2 1772 aa15.06■□□□□ 0
SMARCAL1-203ENST00000392128 PPM1GO15355 546 aaPredicted RBP15.05■□□□□ 0
SMARCAL1-203ENST00000392128 RBM33Q96EV2 1170 aaKnown RBP15.05■□□□□ 0
SMARCAL1-203ENST00000392128 PNNQ9H307 717 aaKnown RBP15.05■□□□□ 0
SMARCAL1-203ENST00000392128 MARF1Q9Y4F3 1742 aaKnown RBP15.05■□□□□ -0
SMARCAL1-203ENST00000392128 WWC1Q8IX03 1113 aa15.05■□□□□ -0
SMARCAL1-203ENST00000392128 PHF8Q9UPP1 1060 aa15.05■□□□□ -0
SMARCAL1-203ENST00000392128 E9PSI1 815 aa15.04■□□□□ -0
SMARCAL1-203ENST00000392128 RRS1Q15050 365 aaKnown RBP15.04■□□□□ -0
SMARCAL1-203ENST00000392128 PROSER2Q86WR7 435 aaPredicted RBP15.04■□□□□ -0
SMARCAL1-203ENST00000392128 IL13P35225 146 aa15.03■□□□□ -0
SMARCAL1-203ENST00000392128 C14orf37Q86TY3 774 aa15.03■□□□□ -0
SMARCAL1-203ENST00000392128 PEAK1Q9H792 1746 aa15.03■□□□□ -0
SMARCAL1-203ENST00000392128 NCOA3Q9Y6Q9 1424 aa15.03■□□□□ -0
SMARCAL1-203ENST00000392128 STRCQ7RTU9 1775 aa15.03■□□□□ -0
SMARCAL1-203ENST00000392128 FCHSD2O94868 740 aa15.03■□□□□ -0
SMARCAL1-203ENST00000392128 HSPA2P54652 639 aa15.02■□□□□ -0
SMARCAL1-203ENST00000392128 RRP1P56182 461 aaKnown RBP15.02□□□□□ -0.01
SMARCAL1-203ENST00000392128 WDR63Q8IWG1 891 aa15.02□□□□□ -0.01
SMARCAL1-203ENST00000392128 MAPK8IP3Q9UPT6 1336 aa15.01□□□□□ -0.01
SMARCAL1-203ENST00000392128 SPINK5Q9NQ38 1064 aaPredicted RBP15.01□□□□□ -0.01
SMARCAL1-203ENST00000392128 RRP7AQ9Y3A4 280 aaKnown RBP15.01□□□□□ -0.01
SMARCAL1-203ENST00000392128 KIF1AQ12756 1690 aa15.01□□□□□ -0.01
SMARCAL1-203ENST00000392128 RSPH6AQ9H0K4 717 aa15.01□□□□□ -0.01
SMARCAL1-203ENST00000392128 NEUROD2Q15784 382 aa15□□□□□ -0.01
SMARCAL1-203ENST00000392128 C19orf44Q9H6X5 657 aa15□□□□□ -0.01
SMARCAL1-203ENST00000392128 DMRT2Q9Y5R5 561 aa15□□□□□ -0.01
SMARCAL1-203ENST00000392128 DCCP43146 1447 aa15□□□□□ -0.01
SMARCAL1-203ENST00000392128 ESCO1Q5FWF5 840 aa15□□□□□ -0.01
SMARCAL1-203ENST00000392128 TMPOP42166 694 aaKnown RBP14.99□□□□□ -0.01
SMARCAL1-203ENST00000392128 PPP4R2Q9NY27 417 aa14.99□□□□□ -0.01
SMARCAL1-203ENST00000392128 RGPD1P0DJD0 1748 aa14.99□□□□□ -0.01
SMARCAL1-203ENST00000392128 ERICH6Q7L0X2 663 aa14.98□□□□□ -0.01
SMARCAL1-203ENST00000392128 TMEM94Q12767 1356 aa14.98□□□□□ -0.01
SMARCAL1-203ENST00000392128 C1orf167Q5SNV9 1468 aa14.98□□□□□ -0.01
SMARCAL1-203ENST00000392128 NLRP6P59044 892 aa14.97□□□□□ -0.01
SMARCAL1-203ENST00000392128 SBNO1A3KN83 1393 aa14.97□□□□□ -0.01
SMARCAL1-203ENST00000392128 PRKAR2BP31323 418 aa14.97□□□□□ -0.01
SMARCAL1-203ENST00000392128 KIF24Q5T7B8 1368 aa14.97□□□□□ -0.01
SMARCAL1-203ENST00000392128 MAP3K19Q56UN5 1328 aa14.97□□□□□ -0.01
SMARCAL1-203ENST00000392128 ABTB2Q8N961 1025 aa14.96□□□□□ -0.01
SMARCAL1-203ENST00000392128 FLT4P35916 1363 aa14.96□□□□□ -0.01
SMARCAL1-203ENST00000392128 NEFMP07197 916 aa14.96□□□□□ -0.01
SMARCAL1-203ENST00000392128 EIF4A2Q14240 407 aaKnown RBP14.96□□□□□ -0.01
SMARCAL1-203ENST00000392128 TRPM3Q9HCF6 1732 aaPredicted RBP14.95□□□□□ -0.02
SMARCAL1-203ENST00000392128 PAK3O75914 559 aaPredicted RBP14.95□□□□□ -0.02
SMARCAL1-203ENST00000392128 PSME1Q06323 249 aa14.95□□□□□ -0.02
SMARCAL1-203ENST00000392128 TRIM35Q9UPQ4 493 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms