RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 RIMBP3CA6NJZ7 1639 aa20.73■□□□□ 0.91
NKX3-1-201ENST00000380871 RIMBP3BA6NNM3 1639 aa20.73■□□□□ 0.91
NKX3-1-201ENST00000380871 RIMBP3Q9UFD9 1639 aa20.73■□□□□ 0.91
NKX3-1-201ENST00000380871 CEBPAP49715 358 aaPredicted RBP20.73■□□□□ 0.91
NKX3-1-201ENST00000380871 WDR63Q8IWG1 891 aa20.73■□□□□ 0.91
NKX3-1-201ENST00000380871 PMFBP1Q8TBY8 1022 aa20.73■□□□□ 0.91
NKX3-1-201ENST00000380871 ZC3H13Q5T200 1668 aaKnown RBP20.72■□□□□ 0.91
NKX3-1-201ENST00000380871 SPRYD3Q8NCJ5 442 aa20.72■□□□□ 0.91
NKX3-1-201ENST00000380871 SOX12O15370 315 aa20.72■□□□□ 0.91
NKX3-1-201ENST00000380871 HMOX1P09601 288 aa20.71■□□□□ 0.91
NKX3-1-201ENST00000380871 MYO5BQ9ULV0 1848 aa20.71■□□□□ 0.91
NKX3-1-201ENST00000380871 BECN1Q14457 450 aa20.69■□□□□ 0.9
NKX3-1-201ENST00000380871 TBC1D32Q96NH3 1257 aa20.69■□□□□ 0.9
NKX3-1-201ENST00000380871 DIAPH1O60610 1272 aaKnown RBP20.68■□□□□ 0.9
NKX3-1-201ENST00000380871 MVPQ14764 893 aaKnown RBP20.68■□□□□ 0.9
NKX3-1-201ENST00000380871 TBC1D2Q9BYX2 928 aa20.68■□□□□ 0.9
NKX3-1-201ENST00000380871 ATAD2Q6PL18 1390 aa20.68■□□□□ 0.9
NKX3-1-201ENST00000380871 RIMS2Q9UQ26 1411 aa20.68■□□□□ 0.9
NKX3-1-201ENST00000380871 RIPK4P57078 832 aa20.67■□□□□ 0.9
NKX3-1-201ENST00000380871 NME9Q86XW9 330 aa20.67■□□□□ 0.9
NKX3-1-201ENST00000380871 FTSJ3Q8IY81 847 aaKnown RBP20.67■□□□□ 0.9
NKX3-1-201ENST00000380871 ANTXR1Q9H6X2 564 aa20.67■□□□□ 0.9
NKX3-1-201ENST00000380871 MYH16Q9H6N6 1097 aa20.67■□□□□ 0.9
NKX3-1-201ENST00000380871 EXOSC9Q06265 439 aaKnown RBP20.66■□□□□ 0.9
NKX3-1-201ENST00000380871 CCDC27Q2M243 656 aa20.66■□□□□ 0.9
NKX3-1-201ENST00000380871 RWDD1Q9H446 243 aaPredicted RBP20.66■□□□□ 0.9
NKX3-1-201ENST00000380871 TMPOP42166 694 aaKnown RBP20.66■□□□□ 0.9
NKX3-1-201ENST00000380871 ARXQ96QS3 562 aa20.65■□□□□ 0.9
NKX3-1-201ENST00000380871 SLC26A8Q96RN1 970 aa20.65■□□□□ 0.9
NKX3-1-201ENST00000380871 UPF2Q9HAU5 1272 aaKnown RBP20.65■□□□□ 0.9
NKX3-1-201ENST00000380871 SMC4Q9NTJ3 1288 aa20.65■□□□□ 0.9
NKX3-1-201ENST00000380871 EMILIN1Q9Y6C2 1016 aa20.65■□□□□ 0.9
NKX3-1-201ENST00000380871 THUMPD2Q9BTF0 503 aaKnown RBP20.65■□□□□ 0.9
NKX3-1-201ENST00000380871 PREX1Q8TCU6 1659 aa20.64■□□□□ 0.9
NKX3-1-201ENST00000380871 ZKSCAN2Q63HK3 967 aa20.64■□□□□ 0.89
NKX3-1-201ENST00000380871 DZIP1LQ8IYY4 767 aaKnown RBP20.64■□□□□ 0.89
NKX3-1-201ENST00000380871 PUS7Q96PZ0 661 aaKnown RBP20.64■□□□□ 0.89
NKX3-1-201ENST00000380871 ZMYM3Q14202 1370 aa20.64■□□□□ 0.89
NKX3-1-201ENST00000380871 ARHGEF28Q8N1W1 1705 aaKnown RBP20.64■□□□□ 0.89
NKX3-1-201ENST00000380871 PTPRMP28827 1452 aa20.64■□□□□ 0.89
NKX3-1-201ENST00000380871 TRIM27P14373 513 aa20.63■□□□□ 0.89
NKX3-1-201ENST00000380871 ABCC11Q96J66 1382 aa20.63■□□□□ 0.89
NKX3-1-201ENST00000380871 DIP2BQ9P265 1576 aa20.63■□□□□ 0.89
NKX3-1-201ENST00000380871 RRS1Q15050 365 aaKnown RBP20.63■□□□□ 0.89
NKX3-1-201ENST00000380871 TMEM131LA2VDJ0 1609 aa20.63■□□□□ 0.89
NKX3-1-201ENST00000380871 METP08581 1390 aa20.62■□□□□ 0.89
NKX3-1-201ENST00000380871 PRKAR2BP31323 418 aa20.62■□□□□ 0.89
NKX3-1-201ENST00000380871 ELL2O00472 640 aaPredicted RBP20.62■□□□□ 0.89
NKX3-1-201ENST00000380871 ITPRIPQ8IWB1 547 aa20.62■□□□□ 0.89
NKX3-1-201ENST00000380871 SSH1Q8WYL5 1049 aa20.62■□□□□ 0.89
NKX3-1-201ENST00000380871 ZFYVE9O95405 1425 aa20.62■□□□□ 0.89
NKX3-1-201ENST00000380871 MFAP1P55081 439 aaKnown RBP20.61■□□□□ 0.89
NKX3-1-201ENST00000380871 USP32Q8NFA0 1604 aa20.61■□□□□ 0.89
NKX3-1-201ENST00000380871 ALKQ9UM73 1620 aa20.61■□□□□ 0.89
NKX3-1-201ENST00000380871 NUDT16Q96DE0 195 aaKnown RBP20.61■□□□□ 0.89
NKX3-1-201ENST00000380871 TRIM35Q9UPQ4 493 aa20.61■□□□□ 0.89
NKX3-1-201ENST00000380871 WASLO00401 505 aaPredicted RBP20.6■□□□□ 0.89
NKX3-1-201ENST00000380871 PLEKHF1Q96S99 279 aa20.59■□□□□ 0.89
NKX3-1-201ENST00000380871 A2ML1A8K2U0 1454 aa20.59■□□□□ 0.89
NKX3-1-201ENST00000380871 NSD2O96028 1365 aa20.59■□□□□ 0.89
NKX3-1-201ENST00000380871 POLKQ9UBT6 870 aa20.59■□□□□ 0.89
NKX3-1-201ENST00000380871 CLTCQ00610 1675 aaKnown RBP20.58■□□□□ 0.89
NKX3-1-201ENST00000380871 AAMPQ13685 434 aa20.58■□□□□ 0.89
NKX3-1-201ENST00000380871 ADGRB2O60241 1585 aa20.58■□□□□ 0.89
NKX3-1-201ENST00000380871 NOB1Q9ULX3 412 aaKnown RBP20.58■□□□□ 0.88
NKX3-1-201ENST00000380871 PHACTR3Q96KR7 559 aa20.56■□□□□ 0.88
NKX3-1-201ENST00000380871 TMEM57Q8N5G2 664 aa20.56■□□□□ 0.88
NKX3-1-201ENST00000380871 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.56■□□□□ 0.88
NKX3-1-201ENST00000380871 PPP6R1Q9UPN7 881 aa20.55■□□□□ 0.88
NKX3-1-201ENST00000380871 TRHP20396 242 aaPredicted RBP20.55■□□□□ 0.88
NKX3-1-201ENST00000380871 C22orf23Q9BZE7 217 aa20.55■□□□□ 0.88
NKX3-1-201ENST00000380871 ATF7IPQ6VMQ6 1270 aa20.54■□□□□ 0.88
NKX3-1-201ENST00000380871 GZF1Q9H116 711 aaPredicted RBP20.54■□□□□ 0.88
NKX3-1-201ENST00000380871 HDGFP51858 240 aaKnown RBP20.54■□□□□ 0.88
NKX3-1-201ENST00000380871 COG3Q96JB2 828 aa20.54■□□□□ 0.88
NKX3-1-201ENST00000380871 CD163L1Q9NR16 1453 aa20.53■□□□□ 0.88
NKX3-1-201ENST00000380871 PLEKHG5O94827 1062 aa20.53■□□□□ 0.88
NKX3-1-201ENST00000380871 LTKP29376 864 aa20.52■□□□□ 0.88
NKX3-1-201ENST00000380871 CCDC61Q9Y6R9 512 aa20.52■□□□□ 0.88
NKX3-1-201ENST00000380871 PPIP5K1Q6PFW1 1433 aa20.52■□□□□ 0.87
NKX3-1-201ENST00000380871 TNRQ92752 1358 aa20.51■□□□□ 0.87
NKX3-1-201ENST00000380871 COL3A1P02461 1466 aaPredicted RBP20.51■□□□□ 0.87
NKX3-1-201ENST00000380871 DCTN1Q14203 1278 aa20.51■□□□□ 0.87
NKX3-1-201ENST00000380871 DDX19BQ9UMR2 479 aa20.51■□□□□ 0.87
NKX3-1-201ENST00000380871 ARHGEF40Q8TER5 1519 aa20.5■□□□□ 0.87
NKX3-1-201ENST00000380871 HDAC1Q13547 482 aaPredicted RBP20.5■□□□□ 0.87
NKX3-1-201ENST00000380871 LNPKQ9C0E8 428 aa20.49■□□□□ 0.87
NKX3-1-201ENST00000380871 FAM83GA6ND36 823 aa20.48■□□□□ 0.87
NKX3-1-201ENST00000380871 ZBTB40Q9NUA8 1239 aa20.48■□□□□ 0.87
NKX3-1-201ENST00000380871 MCM4P33991 863 aa20.47■□□□□ 0.87
NKX3-1-201ENST00000380871 SMC5Q8IY18 1101 aa20.47■□□□□ 0.87
NKX3-1-201ENST00000380871 PRR36Q9H6K5 1346 aa20.47■□□□□ 0.87
NKX3-1-201ENST00000380871 FCHSD2O94868 740 aa20.47■□□□□ 0.87
NKX3-1-201ENST00000380871 CT47B1P0C2W7 299 aaPredicted RBP20.47■□□□□ 0.87
NKX3-1-201ENST00000380871 RSPH6AQ9H0K4 717 aa20.47■□□□□ 0.87
NKX3-1-201ENST00000380871 RBM33Q96EV2 1170 aaKnown RBP20.46■□□□□ 0.87
NKX3-1-201ENST00000380871 FAM43AQ8N2R8 423 aa20.45■□□□□ 0.86
NKX3-1-201ENST00000380871 PNNQ9H307 717 aaKnown RBP20.45■□□□□ 0.86
NKX3-1-201ENST00000380871 EIF5BO60841 1220 aaKnown RBP20.45■□□□□ 0.86
NKX3-1-201ENST00000380871 C1orf115Q9H7X2 142 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms