RNA–Protein interactions for RNA: ENST00000380747.5

HMGN1-202, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3 BASIC

Gene HMGN1, Length 709 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-202ENST00000380747 ESCO1Q5FWF5 840 aa13.18□□□□□ -0.3
HMGN1-202ENST00000380747 HIRIP3Q9BW71 556 aaPredicted RBP13.18□□□□□ -0.3
HMGN1-202ENST00000380747 ROCK2O75116 1388 aaKnown RBP13.18□□□□□ -0.3
HMGN1-202ENST00000380747 BCL9LQ86UU0 1499 aa13.16□□□□□ -0.3
HMGN1-202ENST00000380747 NPHP3Q7Z494 1330 aa13.16□□□□□ -0.3
HMGN1-202ENST00000380747 CLSPNQ9HAW4 1339 aa13.16□□□□□ -0.3
HMGN1-202ENST00000380747 TRPM1Q7Z4N2 1603 aa13.16□□□□□ -0.3
HMGN1-202ENST00000380747 ARHGEF28Q8N1W1 1705 aaKnown RBP13.15□□□□□ -0.3
HMGN1-202ENST00000380747 FMN2Q9NZ56 1722 aa13.14□□□□□ -0.31
HMGN1-202ENST00000380747 PXDNQ92626 1479 aa13.14□□□□□ -0.31
HMGN1-202ENST00000380747 CENPJQ9HC77 1338 aaPredicted RBP13.13□□□□□ -0.31
HMGN1-202ENST00000380747 ADGRB2O60241 1585 aa13.13□□□□□ -0.31
HMGN1-202ENST00000380747 WASLO00401 505 aaPredicted RBP13.13□□□□□ -0.31
HMGN1-202ENST00000380747 GJD4Q96KN9 370 aaPredicted RBP13.13□□□□□ -0.31
HMGN1-202ENST00000380747 CARD11Q9BXL7 1154 aa13.13□□□□□ -0.31
HMGN1-202ENST00000380747 RALGAPBQ86X10 1494 aa13.11□□□□□ -0.31
HMGN1-202ENST00000380747 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.11□□□□□ -0.31
HMGN1-202ENST00000380747 EIF3AQ14152 1382 aaKnown RBP13.11□□□□□ -0.31
HMGN1-202ENST00000380747 FOXO3O43524 673 aa13.11□□□□□ -0.31
HMGN1-202ENST00000380747 PHF8Q9UPP1 1060 aa13.11□□□□□ -0.31
HMGN1-202ENST00000380747 BLMP54132 1417 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-202ENST00000380747 ANKARQ7Z5J8 1434 aa13.11□□□□□ -0.31
HMGN1-202ENST00000380747 GPRASP1Q5JY77 1395 aa13.1□□□□□ -0.31
HMGN1-202ENST00000380747 SLIT2O94813 1529 aa13.1□□□□□ -0.31
HMGN1-202ENST00000380747 XPCQ01831 940 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-202ENST00000380747 CDK19Q9BWU1 502 aa13.1□□□□□ -0.31
HMGN1-202ENST00000380747 MARF1Q9Y4F3 1742 aaKnown RBP13.1□□□□□ -0.31
HMGN1-202ENST00000380747 PMFBP1Q8TBY8 1022 aa13.09□□□□□ -0.31
HMGN1-202ENST00000380747 TIMELESSQ9UNS1 1208 aa13.09□□□□□ -0.31
HMGN1-202ENST00000380747 PRR36Q9H6K5 1346 aa13.09□□□□□ -0.31
HMGN1-202ENST00000380747 TULP4Q9NRJ4 1543 aa13.08□□□□□ -0.31
HMGN1-202ENST00000380747 SRPK2P78362 688 aaKnown RBP13.08□□□□□ -0.32
HMGN1-202ENST00000380747 IFNLR1Q8IU57 520 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-202ENST00000380747 UNC5CLQ8IV45 518 aa13.08□□□□□ -0.32
HMGN1-202ENST00000380747 NUDT16Q96DE0 195 aaKnown RBP13.08□□□□□ -0.32
HMGN1-202ENST00000380747 USP32Q8NFA0 1604 aa13.07□□□□□ -0.32
HMGN1-202ENST00000380747 KIF1AQ12756 1690 aa13.07□□□□□ -0.32
HMGN1-202ENST00000380747 QRICH2Q9H0J4 1663 aa13.07□□□□□ -0.32
HMGN1-202ENST00000380747 GLI3P10071 1580 aa13.07□□□□□ -0.32
HMGN1-202ENST00000380747 PSME1Q06323 249 aa13.06□□□□□ -0.32
HMGN1-202ENST00000380747 KRT28Q7Z3Y7 464 aa13.06□□□□□ -0.32
HMGN1-202ENST00000380747 RGPD8O14715 1765 aaPredicted RBP13.06□□□□□ -0.32
HMGN1-202ENST00000380747 SPATA31A3Q5VYP0 1347 aa13.06□□□□□ -0.32
HMGN1-202ENST00000380747 NGDNQ8NEJ9 315 aaKnown RBP13.05□□□□□ -0.32
HMGN1-202ENST00000380747 CABP2Q9NPB3 220 aa13.05□□□□□ -0.32
HMGN1-202ENST00000380747 EVC2Q86UK5 1308 aa13.05□□□□□ -0.32
HMGN1-202ENST00000380747 ATP7BP35670 1465 aa13.04□□□□□ -0.32
HMGN1-202ENST00000380747 LRP5O75197 1615 aa13.04□□□□□ -0.32
HMGN1-202ENST00000380747 ONECUT3O60422 494 aaPredicted RBP13.04□□□□□ -0.32
HMGN1-202ENST00000380747 VPS72Q15906 364 aa13.03□□□□□ -0.32
HMGN1-202ENST00000380747 CCDC61Q9Y6R9 512 aa13.03□□□□□ -0.32
HMGN1-202ENST00000380747 LMOD2Q6P5Q4 547 aa13.02□□□□□ -0.33
HMGN1-202ENST00000380747 PLEKHG5O94827 1062 aa13.01□□□□□ -0.33
HMGN1-202ENST00000380747 SF3B2Q13435 895 aaKnown RBP13.01□□□□□ -0.33
HMGN1-202ENST00000380747 SEPT12Q8IYM1 358 aa13.01□□□□□ -0.33
HMGN1-202ENST00000380747 TNS3Q68CZ2 1445 aa13□□□□□ -0.33
HMGN1-202ENST00000380747 PPIP5K1Q6PFW1 1433 aa13□□□□□ -0.33
HMGN1-202ENST00000380747 ACEP12821 1306 aa13□□□□□ -0.33
HMGN1-202ENST00000380747 ST20-MTHFSA0A0A6YYL1 179 aa13□□□□□ -0.33
HMGN1-202ENST00000380747 PAK3O75914 559 aaPredicted RBP13□□□□□ -0.33
HMGN1-202ENST00000380747 DEFB132Q7Z7B7 95 aa13□□□□□ -0.33
HMGN1-202ENST00000380747 ITSN1Q15811 1721 aa12.99□□□□□ -0.33
HMGN1-202ENST00000380747 SBNO1A3KN83 1393 aa12.99□□□□□ -0.33
HMGN1-202ENST00000380747 USP47Q96K76 1375 aa12.99□□□□□ -0.33
HMGN1-202ENST00000380747 PLEKHG3A1L390 1219 aa12.99□□□□□ -0.33
HMGN1-202ENST00000380747 NWD2Q9ULI1 1742 aa12.99□□□□□ -0.33
HMGN1-202ENST00000380747 SBNO2Q9Y2G9 1366 aa12.98□□□□□ -0.33
HMGN1-202ENST00000380747 BRWD3Q6RI45 1802 aa12.98□□□□□ -0.33
HMGN1-202ENST00000380747 KRT27Q7Z3Y8 459 aa12.98□□□□□ -0.33
HMGN1-202ENST00000380747 CABP1Q9NZU7 370 aa12.98□□□□□ -0.33
HMGN1-202ENST00000380747 TOPAZ1Q8N9V7 1692 aa12.98□□□□□ -0.33
HMGN1-202ENST00000380747 HAP1P54257 671 aaPredicted RBP12.97□□□□□ -0.33
HMGN1-202ENST00000380747 POLR3AO14802 1390 aaPredicted RBP12.96□□□□□ -0.33
HMGN1-202ENST00000380747 ARHGEF10O15013 1369 aa12.96□□□□□ -0.33
HMGN1-202ENST00000380747 BAG6P46379 1132 aa12.95□□□□□ -0.34
HMGN1-202ENST00000380747 TMC1Q8TDI8 760 aa12.95□□□□□ -0.34
HMGN1-202ENST00000380747 CABLES1Q8TDN4 633 aa12.95□□□□□ -0.34
HMGN1-202ENST00000380747 TESK2Q96S53 571 aa12.95□□□□□ -0.34
HMGN1-202ENST00000380747 PLCH1Q4KWH8 1693 aa12.95□□□□□ -0.34
HMGN1-202ENST00000380747 TRPM3Q9HCF6 1732 aaPredicted RBP12.93□□□□□ -0.34
HMGN1-202ENST00000380747 SLC24A1O60721 1099 aa12.93□□□□□ -0.34
HMGN1-202ENST00000380747 NUTM2GQ5VZR2 741 aa12.93□□□□□ -0.34
HMGN1-202ENST00000380747 RBM42Q9BTD8 480 aaKnown RBP12.93□□□□□ -0.34
HMGN1-202ENST00000380747 DISP2A7MBM2 1401 aa12.93□□□□□ -0.34
HMGN1-202ENST00000380747 TMF1P82094 1093 aa12.92□□□□□ -0.34
HMGN1-202ENST00000380747 KLHL34Q8N239 644 aa12.92□□□□□ -0.34
HMGN1-202ENST00000380747 PLCD3Q8N3E9 789 aa12.92□□□□□ -0.34
HMGN1-202ENST00000380747 ABCA3Q99758 1704 aa12.92□□□□□ -0.34
HMGN1-202ENST00000380747 USP6P35125 1406 aa12.91□□□□□ -0.34
HMGN1-202ENST00000380747 FAM83GA6ND36 823 aa12.91□□□□□ -0.34
HMGN1-202ENST00000380747 ABTB2Q8N961 1025 aa12.91□□□□□ -0.34
HMGN1-202ENST00000380747 CCDC9Q9Y3X0 531 aaKnown RBP12.91□□□□□ -0.34
HMGN1-202ENST00000380747 ALS2Q96Q42 1657 aa12.9□□□□□ -0.34
HMGN1-202ENST00000380747 EIF4G2P78344 907 aaKnown RBP eCLIP12.9□□□□□ -0.341e-6■□□□□ 9.4
HMGN1-202ENST00000380747 MIER1Q8N108 512 aa12.9□□□□□ -0.34
HMGN1-202ENST00000380747 PUS7Q96PZ0 661 aaKnown RBP12.9□□□□□ -0.34
HMGN1-202ENST00000380747 SLC12A5Q9H2X9 1139 aa12.9□□□□□ -0.34
HMGN1-202ENST00000380747 NRAPQ86VF7 1730 aa12.9□□□□□ -0.34
HMGN1-202ENST00000380747 PSDA5PKW4 1024 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-202ENST00000380747 HSPA5P11021 654 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms