RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ITPRIPQ8IWB1 547 aa26.65■■□□□ 1.86
UPF3A-202ENST00000375299 ZNF692Q9BU19 519 aaPredicted RBP26.65■■□□□ 1.86
UPF3A-202ENST00000375299 DDX11L8A8MPP1 907 aa26.64■■□□□ 1.86
UPF3A-202ENST00000375299 PUS7Q96PZ0 661 aaKnown RBP26.64■■□□□ 1.85
UPF3A-202ENST00000375299 TULP4Q9NRJ4 1543 aa26.63■■□□□ 1.85
UPF3A-202ENST00000375299 MRE11P49959 708 aa26.63■■□□□ 1.85
UPF3A-202ENST00000375299 ATF7IPQ6VMQ6 1270 aa26.63■■□□□ 1.85
UPF3A-202ENST00000375299 CAMSAP1Q5T5Y3 1602 aa26.63■■□□□ 1.85
UPF3A-202ENST00000375299 SSH1Q8WYL5 1049 aa26.63■■□□□ 1.85
UPF3A-202ENST00000375299 GLI2P10070 1586 aa26.62■■□□□ 1.85
UPF3A-202ENST00000375299 ARHGEF28Q8N1W1 1705 aaKnown RBP26.62■■□□□ 1.85
UPF3A-202ENST00000375299 CLCN1P35523 988 aa26.62■■□□□ 1.85
UPF3A-202ENST00000375299 OSCARQ8IYS5 282 aa26.62■■□□□ 1.85
UPF3A-202ENST00000375299 SIGLEC1Q9BZZ2 1709 aa26.61■■□□□ 1.85
UPF3A-202ENST00000375299 EVC2Q86UK5 1308 aa26.6■■□□□ 1.85
UPF3A-202ENST00000375299 PLEKHF1Q96S99 279 aa26.6■■□□□ 1.85
UPF3A-202ENST00000375299 ABCC11Q96J66 1382 aa26.59■■□□□ 1.85
UPF3A-202ENST00000375299 DDIT3P35638 169 aa26.59■■□□□ 1.85
UPF3A-202ENST00000375299 TMPOP42166 694 aaKnown RBP26.59■■□□□ 1.85
UPF3A-202ENST00000375299 RBM25P49756 843 aaKnown RBP26.59■■□□□ 1.85
UPF3A-202ENST00000375299 NOB1Q9ULX3 412 aaKnown RBP26.58■■□□□ 1.85
UPF3A-202ENST00000375299 TRIM35Q9UPQ4 493 aa26.58■■□□□ 1.85
UPF3A-202ENST00000375299 PIK3C2BO00750 1634 aa26.58■■□□□ 1.85
UPF3A-202ENST00000375299 SNX21Q969T3 373 aa26.58■■□□□ 1.85
UPF3A-202ENST00000375299 ISY1Q9ULR0 285 aaKnown RBP26.58■■□□□ 1.85
UPF3A-202ENST00000375299 TMEM57Q8N5G2 664 aa26.57■■□□□ 1.84
UPF3A-202ENST00000375299 PNNQ9H307 717 aaKnown RBP26.57■■□□□ 1.84
UPF3A-202ENST00000375299 IL16Q14005 1332 aa26.57■■□□□ 1.84
UPF3A-202ENST00000375299 COL3A1P02461 1466 aaPredicted RBP26.57■■□□□ 1.84
UPF3A-202ENST00000375299 ZBTB40Q9NUA8 1239 aa26.56■■□□□ 1.84
UPF3A-202ENST00000375299 RAPGEF3O95398 923 aa26.56■■□□□ 1.84
UPF3A-202ENST00000375299 NEO1Q92859 1461 aa26.56■■□□□ 1.84
UPF3A-202ENST00000375299 GRPEL1Q9HAV7 217 aa26.56■■□□□ 1.84
UPF3A-202ENST00000375299 NEXMIFQ5QGS0 1516 aa26.55■■□□□ 1.84
UPF3A-202ENST00000375299 U2SURPO15042 1029 aaKnown RBP26.54■■□□□ 1.84
UPF3A-202ENST00000375299 VGFO15240 615 aaPredicted RBP26.54■■□□□ 1.84
UPF3A-202ENST00000375299 NUCB1Q02818 461 aa26.54■■□□□ 1.84
UPF3A-202ENST00000375299 KIF16BQ96L93 1317 aa26.53■■□□□ 1.84
UPF3A-202ENST00000375299 NUTM2DQ5VT03 806 aaPredicted RBP26.53■■□□□ 1.84
UPF3A-202ENST00000375299 DIP2CQ9Y2E4 1556 aa26.52■■□□□ 1.84
UPF3A-202ENST00000375299 NAP1L5Q96NT1 182 aaPredicted RBP26.52■■□□□ 1.84
UPF3A-202ENST00000375299 CIZ1Q9ULV3 898 aaPredicted RBP26.52■■□□□ 1.84
UPF3A-202ENST00000375299 ANKRD26Q9UPS8 1709 aa26.51■■□□□ 1.83
UPF3A-202ENST00000375299 IPO8O15397 1037 aaKnown RBP26.5■■□□□ 1.83
UPF3A-202ENST00000375299 CABP2Q9NPB3 220 aa26.5■■□□□ 1.83
UPF3A-202ENST00000375299 TNPO1Q92973 898 aaKnown RBP26.49■■□□□ 1.83
UPF3A-202ENST00000375299 A0A1W2PP64 1363 aa26.49■■□□□ 1.83
UPF3A-202ENST00000375299 ARHGAP31Q2M1Z3 1444 aa26.49■■□□□ 1.83
UPF3A-202ENST00000375299 LNPKQ9C0E8 428 aa26.48■■□□□ 1.83
UPF3A-202ENST00000375299 CHD1LQ86WJ1 897 aa26.48■■□□□ 1.83
UPF3A-202ENST00000375299 HSP90AB1P08238 724 aaKnown RBP26.47■■□□□ 1.83
UPF3A-202ENST00000375299 GBP4Q96PP9 640 aa26.47■■□□□ 1.83
UPF3A-202ENST00000375299 RIPK4P57078 832 aa26.46■■□□□ 1.83
UPF3A-202ENST00000375299 RAB3GAP1Q15042 981 aa26.46■■□□□ 1.83
UPF3A-202ENST00000375299 ALDH1L2Q3SY69 923 aa26.46■■□□□ 1.83
UPF3A-202ENST00000375299 BMP2KLQ5H9B9 411 aa26.46■■□□□ 1.83
UPF3A-202ENST00000375299 IDI1Q13907 227 aa26.45■■□□□ 1.82
UPF3A-202ENST00000375299 GGNBP2Q9H3C7 697 aa26.44■■□□□ 1.82
UPF3A-202ENST00000375299 MED14O60244 1454 aa26.44■■□□□ 1.82
UPF3A-202ENST00000375299 PTMSP20962 102 aa26.43■■□□□ 1.82
UPF3A-202ENST00000375299 RICTORQ6R327 1708 aa26.43■■□□□ 1.82
UPF3A-202ENST00000375299 SKOR2Q2VWA4 1001 aaPredicted RBP26.42■■□□□ 1.82
UPF3A-202ENST00000375299 ZFYVE9O95405 1425 aa26.42■■□□□ 1.82
UPF3A-202ENST00000375299 ESPNB1AK53 854 aa26.42■■□□□ 1.82
UPF3A-202ENST00000375299 KIF2CQ99661 725 aa26.41■■□□□ 1.82
UPF3A-202ENST00000375299 SLC52A1Q9NWF4 448 aa26.4■■□□□ 1.82
UPF3A-202ENST00000375299 GAS2L3Q86XJ1 694 aa26.39■■□□□ 1.82
UPF3A-202ENST00000375299 ERBB4Q15303 1308 aa26.38■■□□□ 1.81
UPF3A-202ENST00000375299 SAFB2Q14151 953 aaKnown RBP eCLIP26.38■■□□□ 1.81
UPF3A-202ENST00000375299 GCC1Q96CN9 775 aa26.38■■□□□ 1.81
UPF3A-202ENST00000375299 PPIP5K1Q6PFW1 1433 aa26.38■■□□□ 1.81
UPF3A-202ENST00000375299 DIAPH1O60610 1272 aaKnown RBP26.38■■□□□ 1.81
UPF3A-202ENST00000375299 BRPF1P55201 1214 aaPredicted RBP26.38■■□□□ 1.81
UPF3A-202ENST00000375299 YEATS2Q9ULM3 1422 aa26.38■■□□□ 1.81
UPF3A-202ENST00000375299 SRPK2P78362 688 aaKnown RBP26.36■■□□□ 1.81
UPF3A-202ENST00000375299 ZNF428Q96B54 188 aa26.36■■□□□ 1.81
UPF3A-202ENST00000375299 TRIM44Q96DX7 344 aaPredicted RBP26.36■■□□□ 1.81
UPF3A-202ENST00000375299 MYO5BQ9ULV0 1848 aa26.36■■□□□ 1.81
UPF3A-202ENST00000375299 K7ELQ4 463 aaPredicted RBP26.36■■□□□ 1.81
UPF3A-202ENST00000375299 FYB1O15117 783 aa26.36■■□□□ 1.81
UPF3A-202ENST00000375299 HSP90AA1P07900 732 aaKnown RBP26.36■■□□□ 1.81
UPF3A-202ENST00000375299 ANKRD45Q5TZF3 282 aa26.36■■□□□ 1.81
UPF3A-202ENST00000375299 CDC42BPGQ6DT37 1551 aa26.36■■□□□ 1.81
UPF3A-202ENST00000375299 STK26Q9P289 416 aa26.35■■□□□ 1.81
UPF3A-202ENST00000375299 LRRC7Q96NW7 1537 aa26.35■■□□□ 1.81
UPF3A-202ENST00000375299 PNPLA6Q8IY17 1366 aa26.35■■□□□ 1.81
UPF3A-202ENST00000375299 CD2BP2O95400 341 aaKnown RBP26.35■■□□□ 1.81
UPF3A-202ENST00000375299 ATAD2Q6PL18 1390 aa26.34■■□□□ 1.81
UPF3A-202ENST00000375299 CHMP4BQ9H444 224 aaKnown RBP26.34■■□□□ 1.81
UPF3A-202ENST00000375299 REREQ9P2R6 1566 aa26.34■■□□□ 1.81
UPF3A-202ENST00000375299 TMEM131LA2VDJ0 1609 aa26.34■■□□□ 1.81
UPF3A-202ENST00000375299 ZBTB7BO15156 539 aaPredicted RBP26.34■■□□□ 1.81
UPF3A-202ENST00000375299 CLTCQ00610 1675 aaKnown RBP26.34■■□□□ 1.81
UPF3A-202ENST00000375299 CD163L1Q9NR16 1453 aa26.33■■□□□ 1.81
UPF3A-202ENST00000375299 PREX1Q8TCU6 1659 aa26.33■■□□□ 1.81
UPF3A-202ENST00000375299 TERF2IPQ9NYB0 399 aa26.33■■□□□ 1.81
UPF3A-202ENST00000375299 PIK3R4Q99570 1358 aa26.33■■□□□ 1.81
UPF3A-202ENST00000375299 TBC1D9Q6ZT07 1266 aa26.33■■□□□ 1.81
UPF3A-202ENST00000375299 KIF20BQ96Q89 1820 aa26.33■■□□□ 1.8
UPF3A-202ENST00000375299 PTCH1Q13635 1447 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms