RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 HNRNPUQ00839 825 aaKnown RBP eCLIP19.28■□□□□ 0.68
HMGA1-203ENST00000374116 PUS7Q96PZ0 661 aaKnown RBP19.28■□□□□ 0.68
HMGA1-203ENST00000374116 AHDC1Q5TGY3 1603 aaPredicted RBP19.27■□□□□ 0.68
HMGA1-203ENST00000374116 PXDNQ92626 1479 aa19.27■□□□□ 0.68
HMGA1-203ENST00000374116 SOS2Q07890 1332 aaPredicted RBP19.27■□□□□ 0.67
HMGA1-203ENST00000374116 A0A1W2PP64 1363 aa19.27■□□□□ 0.67
HMGA1-203ENST00000374116 COL16A1Q07092 1604 aaPredicted RBP19.26■□□□□ 0.67
HMGA1-203ENST00000374116 NUTM2GQ5VZR2 741 aa19.26■□□□□ 0.67
HMGA1-203ENST00000374116 RBM19Q9Y4C8 960 aaKnown RBP19.25■□□□□ 0.67
HMGA1-203ENST00000374116 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.25■□□□□ 0.67
HMGA1-203ENST00000374116 KTN1Q86UP2 1357 aaKnown RBP19.25■□□□□ 0.67
HMGA1-203ENST00000374116 CPSF1Q10570 1443 aaKnown RBP19.24■□□□□ 0.67
HMGA1-203ENST00000374116 MRS2Q9HD23 443 aa19.24■□□□□ 0.67
HMGA1-203ENST00000374116 AKAP12Q02952 1782 aa19.24■□□□□ 0.67
HMGA1-203ENST00000374116 NEFLP07196 543 aa19.23■□□□□ 0.67
HMGA1-203ENST00000374116 HDGFL2Q7Z4V5 671 aaPredicted RBP19.23■□□□□ 0.67
HMGA1-203ENST00000374116 USP6P35125 1406 aa19.23■□□□□ 0.67
HMGA1-203ENST00000374116 PANK3Q9H999 370 aa19.23■□□□□ 0.67
HMGA1-203ENST00000374116 CARD14Q9BXL6 1004 aa19.22■□□□□ 0.67
HMGA1-203ENST00000374116 TERF2IPQ9NYB0 399 aa19.22■□□□□ 0.67
HMGA1-203ENST00000374116 TRPM3Q9HCF6 1732 aaPredicted RBP19.21■□□□□ 0.67
HMGA1-203ENST00000374116 FKBP8Q14318 412 aa19.21■□□□□ 0.67
HMGA1-203ENST00000374116 LRRC59Q96AG4 307 aaKnown RBP19.21■□□□□ 0.67
HMGA1-203ENST00000374116 ANKRD36BQ8N2N9 1353 aa19.2■□□□□ 0.66
HMGA1-203ENST00000374116 SPATA31A3Q5VYP0 1347 aa19.2■□□□□ 0.66
HMGA1-203ENST00000374116 ILDR2Q71H61 639 aa19.2■□□□□ 0.66
HMGA1-203ENST00000374116 CABLES1Q8TDN4 633 aa19.2■□□□□ 0.66
HMGA1-203ENST00000374116 ZNF692Q9BU19 519 aaPredicted RBP19.2■□□□□ 0.66
HMGA1-203ENST00000374116 ZRANB1Q9UGI0 708 aa19.2■□□□□ 0.66
HMGA1-203ENST00000374116 ABTB2Q8N961 1025 aa19.19■□□□□ 0.66
HMGA1-203ENST00000374116 MON2Q7Z3U7 1717 aa19.19■□□□□ 0.66
HMGA1-203ENST00000374116 NINLQ9Y2I6 1382 aa19.19■□□□□ 0.66
HMGA1-203ENST00000374116 TTC21BQ7Z4L5 1316 aa19.19■□□□□ 0.66
HMGA1-203ENST00000374116 PER1O15534 1290 aaPredicted RBP19.18■□□□□ 0.66
HMGA1-203ENST00000374116 CNGB1Q14028 1251 aaPredicted RBP19.18■□□□□ 0.66
HMGA1-203ENST00000374116 TNS3Q68CZ2 1445 aa19.18■□□□□ 0.66
HMGA1-203ENST00000374116 NME9Q86XW9 330 aa19.18■□□□□ 0.66
HMGA1-203ENST00000374116 FANCIQ9NVI1 1328 aa19.17■□□□□ 0.66
HMGA1-203ENST00000374116 NRKQ7Z2Y5 1582 aa19.17■□□□□ 0.66
HMGA1-203ENST00000374116 SSH2Q76I76 1423 aa19.17■□□□□ 0.66
HMGA1-203ENST00000374116 NUTM2BA6NNL0 878 aaPredicted RBP19.16■□□□□ 0.66
HMGA1-203ENST00000374116 NUTM2EB1AL46 878 aaPredicted RBP19.16■□□□□ 0.66
HMGA1-203ENST00000374116 NUTM2AQ8IVF1 878 aaPredicted RBP19.16■□□□□ 0.66
HMGA1-203ENST00000374116 FAM9BQ8IZU0 186 aa19.16■□□□□ 0.66
HMGA1-203ENST00000374116 SBNO1A3KN83 1393 aa19.16■□□□□ 0.66
HMGA1-203ENST00000374116 NSD3Q9BZ95 1437 aa19.16■□□□□ 0.66
HMGA1-203ENST00000374116 PNPLA6Q8IY17 1366 aa19.16■□□□□ 0.66
HMGA1-203ENST00000374116 ALS2Q96Q42 1657 aa19.16■□□□□ 0.66
HMGA1-203ENST00000374116 SOX12O15370 315 aa19.14■□□□□ 0.65
HMGA1-203ENST00000374116 PIK3C2AO00443 1686 aa19.14■□□□□ 0.65
HMGA1-203ENST00000374116 JCADQ9P266 1359 aa19.14■□□□□ 0.65
HMGA1-203ENST00000374116 NLRP6P59044 892 aa19.14■□□□□ 0.65
HMGA1-203ENST00000374116 RALBP1Q15311 655 aa19.14■□□□□ 0.65
HMGA1-203ENST00000374116 EDC4Q6P2E9 1401 aaKnown RBP19.13■□□□□ 0.65
HMGA1-203ENST00000374116 ZBED9Q6R2W3 1325 aa19.13■□□□□ 0.65
HMGA1-203ENST00000374116 PRKCSHP14314 528 aaPredicted RBP19.13■□□□□ 0.65
HMGA1-203ENST00000374116 GGNBP2Q9H3C7 697 aa19.13■□□□□ 0.65
HMGA1-203ENST00000374116 FYB1O15117 783 aa19.11■□□□□ 0.65
HMGA1-203ENST00000374116 FBLN1P23142 703 aa19.11■□□□□ 0.65
HMGA1-203ENST00000374116 PARD3Q8TEW0 1356 aa19.1■□□□□ 0.65
HMGA1-203ENST00000374116 SHPRHQ149N8 1683 aa19.1■□□□□ 0.65
HMGA1-203ENST00000374116 ARHGEF10O15013 1369 aa19.1■□□□□ 0.65
HMGA1-203ENST00000374116 ADAMTS2O95450 1211 aa19.09■□□□□ 0.65
HMGA1-203ENST00000374116 TTC21AQ8NDW8 1320 aa19.09■□□□□ 0.65
HMGA1-203ENST00000374116 MED1Q15648 1581 aaPredicted RBP19.09■□□□□ 0.65
HMGA1-203ENST00000374116 SOCS7O14512 581 aa19.09■□□□□ 0.65
HMGA1-203ENST00000374116 HAP1P54257 671 aaPredicted RBP19.09■□□□□ 0.65
HMGA1-203ENST00000374116 KNSTRNQ9Y448 316 aa19.08■□□□□ 0.64
HMGA1-203ENST00000374116 MYBBP1AQ9BQG0 1328 aaKnown RBP19.08■□□□□ 0.64
HMGA1-203ENST00000374116 MARF1Q9Y4F3 1742 aaKnown RBP19.08■□□□□ 0.64
HMGA1-203ENST00000374116 MSH5O43196 834 aa19.07■□□□□ 0.64
HMGA1-203ENST00000374116 NLRP13Q86W25 1043 aa19.07■□□□□ 0.64
HMGA1-203ENST00000374116 PNISRQ8TF01 805 aaKnown RBP19.07■□□□□ 0.64
HMGA1-203ENST00000374116 BRD4O60885 1362 aaPredicted RBP19.07■□□□□ 0.64
HMGA1-203ENST00000374116 LRP6O75581 1613 aa19.07■□□□□ 0.64
HMGA1-203ENST00000374116 COL22A1Q8NFW1 1626 aaPredicted RBP19.06■□□□□ 0.64
HMGA1-203ENST00000374116 ZBTB7CA1YPR0 619 aa19.06■□□□□ 0.64
HMGA1-203ENST00000374116 ZC3H6P61129 1189 aaKnown RBP19.06■□□□□ 0.64
HMGA1-203ENST00000374116 CC2D1BQ5T0F9 858 aaKnown RBP19.06■□□□□ 0.64
HMGA1-203ENST00000374116 KIF20BQ96Q89 1820 aa19.05■□□□□ 0.64
HMGA1-203ENST00000374116 CGNL1Q0VF96 1302 aa19.05■□□□□ 0.64
HMGA1-203ENST00000374116 TNNT2P45379 298 aaPredicted RBP19.05■□□□□ 0.64
HMGA1-203ENST00000374116 ABCA3Q99758 1704 aa19.05■□□□□ 0.64
HMGA1-203ENST00000374116 CRYBG1Q9Y4K1 1723 aa19.04■□□□□ 0.64
HMGA1-203ENST00000374116 GCP02774 474 aa19.04■□□□□ 0.64
HMGA1-203ENST00000374116 COG3Q96JB2 828 aa19.04■□□□□ 0.64
HMGA1-203ENST00000374116 SPATA31A6Q5VVP1 1343 aa19.03■□□□□ 0.64
HMGA1-203ENST00000374116 AMER1Q5JTC6 1135 aaPredicted RBP19.03■□□□□ 0.64
HMGA1-203ENST00000374116 PHRF1Q9P1Y6 1649 aaKnown RBP19.03■□□□□ 0.64
HMGA1-203ENST00000374116 USP19O94966 1318 aa19.02■□□□□ 0.64
HMGA1-203ENST00000374116 CHRNA2Q15822 529 aa19.02■□□□□ 0.63
HMGA1-203ENST00000374116 C8orf37Q96NL8 207 aa19.02■□□□□ 0.63
HMGA1-203ENST00000374116 OVOS2A0A0J9YW53 1432 aa19.02■□□□□ 0.63
HMGA1-203ENST00000374116 OVOS2Q6IE36 1432 aa19.02■□□□□ 0.63
HMGA1-203ENST00000374116 MEX3CQ5U5Q3 659 aaKnown RBP19.01■□□□□ 0.63
HMGA1-203ENST00000374116 ERICH6BQ5W0A0 696 aa19.01■□□□□ 0.63
HMGA1-203ENST00000374116 USP31Q70CQ4 1352 aa19.01■□□□□ 0.63
HMGA1-203ENST00000374116 ERICH6Q7L0X2 663 aa19■□□□□ 0.63
HMGA1-203ENST00000374116 KIAA0232Q92628 1395 aa18.99■□□□□ 0.63
HMGA1-203ENST00000374116 RRS1Q15050 365 aaKnown RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms