RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TMEM57Q8N5G2 664 aa20.7■□□□□ 0.9
SDC4-201ENST00000372733 SENP3Q9H4L4 574 aaPredicted RBP20.7■□□□□ 0.9
SDC4-201ENST00000372733 A0A1W2PP64 1363 aa20.7■□□□□ 0.9
SDC4-201ENST00000372733 FRMPD1Q5SYB0 1578 aa20.69■□□□□ 0.9
SDC4-201ENST00000372733 FSD2A1L4K1 749 aa20.69■□□□□ 0.9
SDC4-201ENST00000372733 PANK2Q9BZ23 570 aa20.69■□□□□ 0.9
SDC4-201ENST00000372733 ASXL2Q76L83 1435 aa20.69■□□□□ 0.9
SDC4-201ENST00000372733 COL3A1P02461 1466 aaPredicted RBP20.69■□□□□ 0.9
SDC4-201ENST00000372733 SMC5Q8IY18 1101 aa20.68■□□□□ 0.9
SDC4-201ENST00000372733 RPGRIP1LQ68CZ1 1315 aa20.68■□□□□ 0.9
SDC4-201ENST00000372733 ABCC11Q96J66 1382 aa20.67■□□□□ 0.9
SDC4-201ENST00000372733 CAMSAP1Q5T5Y3 1602 aa20.67■□□□□ 0.9
SDC4-201ENST00000372733 HECW2Q9P2P5 1572 aa20.67■□□□□ 0.9
SDC4-201ENST00000372733 HSCBQ8IWL3 235 aa20.66■□□□□ 0.9
SDC4-201ENST00000372733 TRAK2O60296 914 aa20.66■□□□□ 0.9
SDC4-201ENST00000372733 PUS7Q96PZ0 661 aaKnown RBP20.66■□□□□ 0.9
SDC4-201ENST00000372733 ZBTB40Q9NUA8 1239 aa20.65■□□□□ 0.9
SDC4-201ENST00000372733 ABCC3O15438 1527 aa20.65■□□□□ 0.9
SDC4-201ENST00000372733 ZNF692Q9BU19 519 aaPredicted RBP20.64■□□□□ 0.9
SDC4-201ENST00000372733 NEXMIFQ5QGS0 1516 aa20.63■□□□□ 0.89
SDC4-201ENST00000372733 SRPK2P78362 688 aaKnown RBP20.63■□□□□ 0.89
SDC4-201ENST00000372733 LNPKQ9C0E8 428 aa20.63■□□□□ 0.89
SDC4-201ENST00000372733 STK26Q9P289 416 aa20.63■□□□□ 0.89
SDC4-201ENST00000372733 RIPK4P57078 832 aa20.63■□□□□ 0.89
SDC4-201ENST00000372733 SIGLEC1Q9BZZ2 1709 aa20.62■□□□□ 0.89
SDC4-201ENST00000372733 IL16Q14005 1332 aa20.61■□□□□ 0.89
SDC4-201ENST00000372733 KIF16BQ96L93 1317 aa20.61■□□□□ 0.89
SDC4-201ENST00000372733 POGZQ7Z3K3 1410 aa20.61■□□□□ 0.89
SDC4-201ENST00000372733 NCOA3Q9Y6Q9 1424 aa20.61■□□□□ 0.89
SDC4-201ENST00000372733 VGFO15240 615 aaPredicted RBP20.6■□□□□ 0.89
SDC4-201ENST00000372733 NUCB1Q02818 461 aa20.6■□□□□ 0.89
SDC4-201ENST00000372733 FYB1O15117 783 aa20.58■□□□□ 0.89
SDC4-201ENST00000372733 RBM25P49756 843 aaKnown RBP20.58■□□□□ 0.89
SDC4-201ENST00000372733 DDIT3P35638 169 aa20.57■□□□□ 0.88
SDC4-201ENST00000372733 PIK3C2BO00750 1634 aa20.57■□□□□ 0.88
SDC4-201ENST00000372733 DDX11L8A8MPP1 907 aa20.57■□□□□ 0.88
SDC4-201ENST00000372733 IPO8O15397 1037 aaKnown RBP20.57■□□□□ 0.88
SDC4-201ENST00000372733 MINK1Q8N4C8 1332 aaPredicted RBP20.57■□□□□ 0.88
SDC4-201ENST00000372733 CHD1LQ86WJ1 897 aa20.57■□□□□ 0.88
SDC4-201ENST00000372733 DIAPH1O60610 1272 aaKnown RBP20.56■□□□□ 0.88
SDC4-201ENST00000372733 MLH3Q9UHC1 1453 aa20.56■□□□□ 0.88
SDC4-201ENST00000372733 CD163L1Q9NR16 1453 aa20.55■□□□□ 0.88
SDC4-201ENST00000372733 CFAP74Q9C0B2 1584 aa20.55■□□□□ 0.88
SDC4-201ENST00000372733 LRRC7Q96NW7 1537 aa20.54■□□□□ 0.88
SDC4-201ENST00000372733 ANKRD26Q9UPS8 1709 aa20.54■□□□□ 0.88
SDC4-201ENST00000372733 MRE11P49959 708 aa20.54■□□□□ 0.88
SDC4-201ENST00000372733 SNX21Q969T3 373 aa20.54■□□□□ 0.88
SDC4-201ENST00000372733 HSP90AB1P08238 724 aaKnown RBP20.54■□□□□ 0.88
SDC4-201ENST00000372733 C1orf115Q9H7X2 142 aa20.54■□□□□ 0.88
SDC4-201ENST00000372733 TERF2IPQ9NYB0 399 aa20.54■□□□□ 0.88
SDC4-201ENST00000372733 TNPO1Q92973 898 aaKnown RBP20.53■□□□□ 0.88
SDC4-201ENST00000372733 ALDH1L2Q3SY69 923 aa20.53■□□□□ 0.88
SDC4-201ENST00000372733 GRPEL1Q9HAV7 217 aa20.53■□□□□ 0.88
SDC4-201ENST00000372733 ATAD2Q6PL18 1390 aa20.52■□□□□ 0.88
SDC4-201ENST00000372733 MED14O60244 1454 aa20.52■□□□□ 0.88
SDC4-201ENST00000372733 PTPRMP28827 1452 aa20.52■□□□□ 0.88
SDC4-201ENST00000372733 BMP2KLQ5H9B9 411 aa20.52■□□□□ 0.87
SDC4-201ENST00000372733 PRAM1Q96QH2 718 aa20.52■□□□□ 0.87
SDC4-201ENST00000372733 PPIP5K1Q6PFW1 1433 aa20.51■□□□□ 0.87
SDC4-201ENST00000372733 IDI1Q13907 227 aa20.51■□□□□ 0.87
SDC4-201ENST00000372733 CD2BP2O95400 341 aaKnown RBP20.51■□□□□ 0.87
SDC4-201ENST00000372733 ANKRD45Q5TZF3 282 aa20.51■□□□□ 0.87
SDC4-201ENST00000372733 UBE2Q2Q8WVN8 375 aa20.51■□□□□ 0.87
SDC4-201ENST00000372733 KIF2CQ99661 725 aa20.51■□□□□ 0.87
SDC4-201ENST00000372733 FOXD4L1Q9NU39 408 aa20.51■□□□□ 0.87
SDC4-201ENST00000372733 PRKAR2BP31323 418 aa20.5■□□□□ 0.87
SDC4-201ENST00000372733 PNPLA6Q8IY17 1366 aa20.5■□□□□ 0.87
SDC4-201ENST00000372733 THUMPD2Q9BTF0 503 aaKnown RBP20.5■□□□□ 0.87
SDC4-201ENST00000372733 FBLN1P23142 703 aa20.49■□□□□ 0.87
SDC4-201ENST00000372733 CLCN1P35523 988 aa20.49■□□□□ 0.87
SDC4-201ENST00000372733 PNNQ9H307 717 aaKnown RBP20.49■□□□□ 0.87
SDC4-201ENST00000372733 NAP1L5Q96NT1 182 aaPredicted RBP20.48■□□□□ 0.87
SDC4-201ENST00000372733 FAM135BQ49AJ0 1406 aa20.47■□□□□ 0.87
SDC4-201ENST00000372733 RAB3GAP1Q15042 981 aa20.47■□□□□ 0.87
SDC4-201ENST00000372733 CIZ1Q9ULV3 898 aaPredicted RBP20.47■□□□□ 0.87
SDC4-201ENST00000372733 ZBTB7BO15156 539 aaPredicted RBP20.47■□□□□ 0.87
SDC4-201ENST00000372733 TBC1D9Q6ZT07 1266 aa20.47■□□□□ 0.87
SDC4-201ENST00000372733 ZFYVE9O95405 1425 aa20.46■□□□□ 0.87
SDC4-201ENST00000372733 HDGFL2Q7Z4V5 671 aaPredicted RBP20.46■□□□□ 0.87
SDC4-201ENST00000372733 RBM42Q9BTD8 480 aaKnown RBP20.46■□□□□ 0.87
SDC4-201ENST00000372733 FCHSD2O94868 740 aa20.46■□□□□ 0.87
SDC4-201ENST00000372733 HSP90AA1P07900 732 aaKnown RBP20.46■□□□□ 0.87
SDC4-201ENST00000372733 GAS2L3Q86XJ1 694 aa20.46■□□□□ 0.87
SDC4-201ENST00000372733 TSPYL6Q8N831 410 aa20.46■□□□□ 0.87
SDC4-201ENST00000372733 GBP4Q96PP9 640 aa20.46■□□□□ 0.87
SDC4-201ENST00000372733 CDC42BPGQ6DT37 1551 aa20.46■□□□□ 0.87
SDC4-201ENST00000372733 CLTCQ00610 1675 aaKnown RBP20.46■□□□□ 0.87
SDC4-201ENST00000372733 RAPGEF3O95398 923 aa20.45■□□□□ 0.86
SDC4-201ENST00000372733 MYO5BQ9ULV0 1848 aa20.45■□□□□ 0.86
SDC4-201ENST00000372733 HMOX1P09601 288 aa20.45■□□□□ 0.86
SDC4-201ENST00000372733 MRPL50Q8N5N7 158 aaKnown RBP20.45■□□□□ 0.86
SDC4-201ENST00000372733 PHACTR3Q96KR7 559 aa20.45■□□□□ 0.86
SDC4-201ENST00000372733 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.44■□□□□ 0.86
SDC4-201ENST00000372733 GCC1Q96CN9 775 aa20.44■□□□□ 0.86
SDC4-201ENST00000372733 CABP1Q9NZU7 370 aa20.44■□□□□ 0.86
SDC4-201ENST00000372733 PTCH1Q13635 1447 aa20.44■□□□□ 0.86
SDC4-201ENST00000372733 YTHDC2Q9H6S0 1430 aaKnown RBP20.44■□□□□ 0.86
SDC4-201ENST00000372733 ELL2O00472 640 aaPredicted RBP20.44■□□□□ 0.86
SDC4-201ENST00000372733 SIRT2Q8IXJ6 389 aa20.44■□□□□ 0.86
SDC4-201ENST00000372733 ERBB4Q15303 1308 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms