RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TMEM132EQ6IEE7 984 aa13.82□□□□□ -0.2
PTPRF-203ENST00000372407 CCDC47Q96A33 483 aaKnown RBP13.82□□□□□ -0.2
PTPRF-203ENST00000372407 NASPP49321 788 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-203ENST00000372407 EVA1CP58658 441 aa13.81□□□□□ -0.2
PTPRF-203ENST00000372407 CABP2Q9NPB3 220 aa13.81□□□□□ -0.2
PTPRF-203ENST00000372407 PNISRQ8TF01 805 aaKnown RBP13.81□□□□□ -0.2
PTPRF-203ENST00000372407 PDZRN3Q9UPQ7 1066 aa13.81□□□□□ -0.2
PTPRF-203ENST00000372407 DISP1Q96F81 1524 aa13.81□□□□□ -0.2
PTPRF-203ENST00000372407 MBD3O95983 291 aa13.8□□□□□ -0.2
PTPRF-203ENST00000372407 CLASRPQ8N2M8 674 aaKnown RBP13.8□□□□□ -0.2
PTPRF-203ENST00000372407 MAP3K1Q13233 1512 aa13.8□□□□□ -0.2
PTPRF-203ENST00000372407 EXOSC9Q06265 439 aaKnown RBP13.8□□□□□ -0.2
PTPRF-203ENST00000372407 HFM1A2PYH4 1435 aa13.79□□□□□ -0.2
PTPRF-203ENST00000372407 MCM2P49736 904 aa13.79□□□□□ -0.2
PTPRF-203ENST00000372407 AMOTL1Q8IY63 956 aa13.79□□□□□ -0.2
PTPRF-203ENST00000372407 RAPGEF4Q8WZA2 1011 aa13.79□□□□□ -0.2
PTPRF-203ENST00000372407 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-203ENST00000372407 RALYLQ86SE5 291 aaKnown RBP13.79□□□□□ -0.2
PTPRF-203ENST00000372407 SAFBQ15424 915 aaKnown RBP eCLIP13.79□□□□□ -0.2
PTPRF-203ENST00000372407 BACH2Q9BYV9 841 aa13.79□□□□□ -0.2
PTPRF-203ENST00000372407 NOL10Q9BSC4 688 aaKnown RBP13.78□□□□□ -0.2
PTPRF-203ENST00000372407 NEK4P51957 841 aa13.78□□□□□ -0.2
PTPRF-203ENST00000372407 NBPF1Q3BBV0 1214 aa13.78□□□□□ -0.2
PTPRF-203ENST00000372407 ZNF771Q7L3S4 317 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-203ENST00000372407 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.78□□□□□ -0.2
PTPRF-203ENST00000372407 GPATCH8Q9UKJ3 1502 aaKnown RBP13.78□□□□□ -0.2
PTPRF-203ENST00000372407 SLC26A8Q96RN1 970 aa13.78□□□□□ -0.2
PTPRF-203ENST00000372407 IFT57Q9NWB7 429 aa13.78□□□□□ -0.2
PTPRF-203ENST00000372407 RABEP1Q15276 862 aa13.78□□□□□ -0.2
PTPRF-203ENST00000372407 NBPF8Q3BBV2 869 aa13.78□□□□□ -0.2
PTPRF-203ENST00000372407 NFXL1Q6ZNB6 911 aa13.78□□□□□ -0.2
PTPRF-203ENST00000372407 SURF6O75683 361 aaKnown RBP13.77□□□□□ -0.2
PTPRF-203ENST00000372407 RIC3Q7Z5B4 369 aa13.77□□□□□ -0.2
PTPRF-203ENST00000372407 RNF214Q8ND24 703 aa13.77□□□□□ -0.2
PTPRF-203ENST00000372407 GCC1Q96CN9 775 aa13.77□□□□□ -0.2
PTPRF-203ENST00000372407 PRKAR2BP31323 418 aa13.77□□□□□ -0.21
PTPRF-203ENST00000372407 PCMTD1Q96MG8 357 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-203ENST00000372407 SDF4Q9BRK5 362 aa13.77□□□□□ -0.21
PTPRF-203ENST00000372407 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-203ENST00000372407 PSMA5P28066 241 aa13.77□□□□□ -0.21
PTPRF-203ENST00000372407 ERICH2A1L162 156 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 NEUROD6Q96NK8 337 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 DHX29Q7Z478 1369 aaKnown RBP13.76□□□□□ -0.21
PTPRF-203ENST00000372407 CNTROBQ8N137 903 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 ABCC5O15440 1437 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 PDCP20941 246 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 NLRP6P59044 892 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 TEX35Q5T0J7 233 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 MEX3CQ5U5Q3 659 aaKnown RBP13.76□□□□□ -0.21
PTPRF-203ENST00000372407 CCDC39Q9UFE4 941 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 ZNF518AQ6AHZ1 1483 aa13.76□□□□□ -0.21
PTPRF-203ENST00000372407 CAVIN1Q6NZI2 390 aaKnown RBP13.75□□□□□ -0.21
PTPRF-203ENST00000372407 VPS37DQ86XT2 251 aa13.75□□□□□ -0.21
PTPRF-203ENST00000372407 TWISTNBQ3B726 338 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-203ENST00000372407 DMRT2Q9Y5R5 561 aa13.75□□□□□ -0.21
PTPRF-203ENST00000372407 CCDC30Q5VVM6 783 aa13.75□□□□□ -0.21
PTPRF-203ENST00000372407 BCAR3O75815 825 aa13.75□□□□□ -0.21
PTPRF-203ENST00000372407 GAS2L2Q8NHY3 880 aa13.75□□□□□ -0.21
PTPRF-203ENST00000372407 NINLQ9Y2I6 1382 aa13.75□□□□□ -0.21
PTPRF-203ENST00000372407 AIMP1Q12904 312 aaKnown RBP13.74□□□□□ -0.21
PTPRF-203ENST00000372407 FBXO31Q5XUX0 539 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-203ENST00000372407 MNS1Q8NEH6 495 aa13.74□□□□□ -0.21
PTPRF-203ENST00000372407 CT47B1P0C2W7 299 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-203ENST00000372407 NAT10Q9H0A0 1025 aaKnown RBP13.74□□□□□ -0.21
PTPRF-203ENST00000372407 ARGLU1Q9NWB6 273 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-203ENST00000372407 WASHC4Q2M389 1173 aa13.74□□□□□ -0.21
PTPRF-203ENST00000372407 MAP7D2Q96T17 732 aa13.74□□□□□ -0.21
PTPRF-203ENST00000372407 MTERF4Q7Z6M4 381 aaKnown RBP13.73□□□□□ -0.21
PTPRF-203ENST00000372407 FSD1Q9BTV5 496 aa13.73□□□□□ -0.21
PTPRF-203ENST00000372407 SLC12A5Q9H2X9 1139 aa13.73□□□□□ -0.21
PTPRF-203ENST00000372407 R3HCC1Q9Y3T6 440 aaKnown RBP13.73□□□□□ -0.21
PTPRF-203ENST00000372407 CHD1O14646 1710 aa13.73□□□□□ -0.21
PTPRF-203ENST00000372407 SETQ01105 290 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-203ENST00000372407 KIAA1107Q9UPP5 1409 aa13.73□□□□□ -0.21
PTPRF-203ENST00000372407 PTPN23Q9H3S7 1636 aa13.73□□□□□ -0.21
PTPRF-203ENST00000372407 DHX16O60231 1041 aaKnown RBP13.73□□□□□ -0.21
PTPRF-203ENST00000372407 RPGRIP1LQ68CZ1 1315 aa13.73□□□□□ -0.21
PTPRF-203ENST00000372407 LETM1O95202 739 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-203ENST00000372407 WDR63Q8IWG1 891 aa13.72□□□□□ -0.21
PTPRF-203ENST00000372407 FBXW7Q969H0 707 aa13.72□□□□□ -0.21
PTPRF-203ENST00000372407 PRPF40AO75400 957 aaKnown RBP13.72□□□□□ -0.21
PTPRF-203ENST00000372407 FOSBP53539 338 aa13.72□□□□□ -0.21
PTPRF-203ENST00000372407 NLRP2Q9NX02 1062 aa13.72□□□□□ -0.21
PTPRF-203ENST00000372407 TSR2Q969E8 191 aaKnown RBP13.71□□□□□ -0.21
PTPRF-203ENST00000372407 SYTL4Q96C24 671 aaPredicted RBP13.71□□□□□ -0.21
PTPRF-203ENST00000372407 ATF7IPQ6VMQ6 1270 aa13.71□□□□□ -0.21
PTPRF-203ENST00000372407 TRIM5Q9C035 493 aa13.71□□□□□ -0.21
PTPRF-203ENST00000372407 ABCC10Q5T3U5 1492 aa13.71□□□□□ -0.22
PTPRF-203ENST00000372407 GNAI2P04899 355 aa13.71□□□□□ -0.22
PTPRF-203ENST00000372407 BRPF3Q9ULD4 1205 aa13.71□□□□□ -0.22
PTPRF-203ENST00000372407 SMG6Q86US8 1419 aaKnown RBP13.7□□□□□ -0.22
PTPRF-203ENST00000372407 HIP1O00291 1037 aa13.7□□□□□ -0.22
PTPRF-203ENST00000372407 NOB1Q9ULX3 412 aaKnown RBP13.7□□□□□ -0.22
PTPRF-203ENST00000372407 KINO60870 393 aaKnown RBP13.7□□□□□ -0.22
PTPRF-203ENST00000372407 CWC22Q9HCG8 908 aaKnown RBP13.7□□□□□ -0.22
PTPRF-203ENST00000372407 NCOA1Q15788 1441 aa13.69□□□□□ -0.22
PTPRF-203ENST00000372407 RAD21O60216 631 aa13.69□□□□□ -0.22
PTPRF-203ENST00000372407 OLFM4Q6UX06 510 aa13.69□□□□□ -0.22
PTPRF-203ENST00000372407 ERBINQ96RT1 1412 aa13.69□□□□□ -0.22
PTPRF-203ENST00000372407 A2MP01023 1474 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms