RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 ZNF396Q96N95 335 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-208ENST00000367256 KIF2AO00139 706 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-208ENST00000367256 FILIP1LQ4L180 1135 aa8.7□□□□□ -1.02
SYNE1-208ENST00000367256 CENPHQ9H3R5 247 aa8.7□□□□□ -1.02
SYNE1-208ENST00000367256 ZNHIT6Q9NWK9 470 aaKnown RBP8.7□□□□□ -1.02
SYNE1-208ENST00000367256 EIF3JO75822 258 aaKnown RBP8.7□□□□□ -1.02
SYNE1-208ENST00000367256 KRT18P05783 430 aaKnown RBP8.7□□□□□ -1.02
SYNE1-208ENST00000367256 HIP1O00291 1037 aa8.7□□□□□ -1.02
SYNE1-208ENST00000367256 WASHC4Q2M389 1173 aa8.7□□□□□ -1.02
SYNE1-208ENST00000367256 CCAR1Q8IX12 1150 aaKnown RBP8.7□□□□□ -1.02
SYNE1-208ENST00000367256 GNAI1P63096 354 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 GBP2P32456 591 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-208ENST00000367256 RIPK4P57078 832 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 LUC7LQ9NQ29 371 aaKnown RBP8.69□□□□□ -1.02
SYNE1-208ENST00000367256 ERICH3Q5RHP9 1530 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 PDE3AQ14432 1141 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 ERLIN1O75477 346 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 NEFHP12036 1026 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 BRPF1P55201 1214 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-208ENST00000367256 WWC2Q6AWC2 1192 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 ANKRD62A6NC57 917 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 PLEKHH2Q8IVE3 1493 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 FYCO1Q9BQS8 1478 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 SLC3A2P08195 630 aaKnown RBP8.69□□□□□ -1.02
SYNE1-208ENST00000367256 MEX3CQ5U5Q3 659 aaKnown RBP8.69□□□□□ -1.02
SYNE1-208ENST00000367256 FSD1Q9BTV5 496 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 DIAPH1O60610 1272 aaKnown RBP8.69□□□□□ -1.02
SYNE1-208ENST00000367256 FGD6Q6ZV73 1430 aa8.69□□□□□ -1.02
SYNE1-208ENST00000367256 IKQ13123 557 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-208ENST00000367256 SPC24Q8NBT2 197 aa8.68□□□□□ -1.02
SYNE1-208ENST00000367256 NEUROD6Q96NK8 337 aa8.68□□□□□ -1.02
SYNE1-208ENST00000367256 HNRNPMP52272 730 aaKnown RBP eCLIP8.68□□□□□ -1.02
SYNE1-208ENST00000367256 KDM4AO75164 1064 aa8.68□□□□□ -1.02
SYNE1-208ENST00000367256 CCDC181Q5TID7 509 aa8.68□□□□□ -1.02
SYNE1-208ENST00000367256 SMG6Q86US8 1419 aaKnown RBP8.68□□□□□ -1.02
SYNE1-208ENST00000367256 CCDC192P0DO97 292 aa8.68□□□□□ -1.02
SYNE1-208ENST00000367256 STIM1Q13586 685 aa8.68□□□□□ -1.02
SYNE1-208ENST00000367256 JMYQ8N9B5 988 aa8.68□□□□□ -1.02
SYNE1-208ENST00000367256 FAM193AP78312 1265 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 VGFO15240 615 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-208ENST00000367256 PPFIBP1Q86W92 1011 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 DYDC1Q8WWB3 177 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 LNPKQ9C0E8 428 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 MTMR7Q9Y216 660 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 UBTFL1P0CB47 393 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-208ENST00000367256 FMNL2Q96PY5 1086 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 MINK1Q8N4C8 1332 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-208ENST00000367256 DEF6Q9H4E7 631 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 RRBP1Q9P2E9 1410 aaKnown RBP8.67□□□□□ -1.02
SYNE1-208ENST00000367256 HMGB1P1B2RPK0 211 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-208ENST00000367256 CCDC112Q8NEF3 446 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 TSPYL4Q9UJ04 414 aa8.67□□□□□ -1.02
SYNE1-208ENST00000367256 APAF1O14727 1248 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 SERPINC1P01008 464 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 AEBP1Q8IUX7 1158 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 PANK1Q8TE04 598 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 RBM10P98175 930 aaKnown RBP8.66□□□□□ -1.02
SYNE1-208ENST00000367256 TBC1D2BQ9UPU7 963 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 STK38Q15208 465 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 TAX1BP1Q86VP1 789 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 BRPF3Q9ULD4 1205 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 LRRCC1Q9C099 1032 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 ESPNB1AK53 854 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 FIBPO43427 364 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 CLASRPQ8N2M8 674 aaKnown RBP8.66□□□□□ -1.02
SYNE1-208ENST00000367256 UQCRHLA0A096LP55 91 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 UQCRHP07919 91 aa8.66□□□□□ -1.02
SYNE1-208ENST00000367256 WDR33Q9C0J8 1336 aaKnown RBP8.65□□□□□ -1.02
SYNE1-208ENST00000367256 TNMDQ9H2S6 317 aa8.65□□□□□ -1.02
SYNE1-208ENST00000367256 GCC1Q96CN9 775 aa8.65□□□□□ -1.02
SYNE1-208ENST00000367256 SLC26A8Q96RN1 970 aa8.65□□□□□ -1.02
SYNE1-208ENST00000367256 ANKRD1Q15327 319 aa8.65□□□□□ -1.02
SYNE1-208ENST00000367256 BACH2Q9BYV9 841 aa8.65□□□□□ -1.02
SYNE1-208ENST00000367256 GRPEL1Q9HAV7 217 aa8.65□□□□□ -1.02
SYNE1-208ENST00000367256 DACH1Q9UI36 760 aa8.65□□□□□ -1.02
SYNE1-208ENST00000367256 CEBPZQ03701 1054 aaKnown RBP8.65□□□□□ -1.03
SYNE1-208ENST00000367256 IL27Q8NEV9 243 aa8.65□□□□□ -1.03
SYNE1-208ENST00000367256 DNAJC2Q99543 621 aaKnown RBP8.65□□□□□ -1.03
SYNE1-208ENST00000367256 DHX37Q8IY37 1157 aaKnown RBP8.65□□□□□ -1.03
SYNE1-208ENST00000367256 CBFA2T2O43439 604 aa8.64□□□□□ -1.03
SYNE1-208ENST00000367256 RIC3Q7Z5B4 369 aa8.64□□□□□ -1.03
SYNE1-208ENST00000367256 SEPT11Q9NVA2 429 aaKnown RBP8.64□□□□□ -1.03
SYNE1-208ENST00000367256 SUPT6HQ7KZ85 1726 aaKnown RBP8.64□□□□□ -1.03
SYNE1-208ENST00000367256 KLHL34Q8N239 644 aa8.64□□□□□ -1.03
SYNE1-208ENST00000367256 FAM107BQ9H098 131 aa8.64□□□□□ -1.03
SYNE1-208ENST00000367256 LRRC9Q6ZRR7 1453 aa8.64□□□□□ -1.03
SYNE1-208ENST00000367256 PRPF40AO75400 957 aaKnown RBP8.64□□□□□ -1.03
SYNE1-208ENST00000367256 ZSCAN30Q86W11 494 aa8.64□□□□□ -1.03
SYNE1-208ENST00000367256 ERICH4A6NGS2 130 aa8.64□□□□□ -1.03
SYNE1-208ENST00000367256 GNAI3P08754 354 aa8.64□□□□□ -1.03
SYNE1-208ENST00000367256 EFCAB5A4FU69 1503 aa8.63□□□□□ -1.03
SYNE1-208ENST00000367256 MCM5P33992 734 aa8.63□□□□□ -1.03
SYNE1-208ENST00000367256 ATP2B1P20020 1258 aa8.63□□□□□ -1.03
SYNE1-208ENST00000367256 ME1P48163 572 aa8.63□□□□□ -1.03
SYNE1-208ENST00000367256 PSME1Q06323 249 aa8.63□□□□□ -1.03
SYNE1-208ENST00000367256 GIMAP7Q8NHV1 300 aa8.63□□□□□ -1.03
SYNE1-208ENST00000367256 CCDC102AQ96A19 550 aa8.63□□□□□ -1.03
SYNE1-208ENST00000367256 AIMP1Q12904 312 aaKnown RBP8.62□□□□□ -1.03
SYNE1-208ENST00000367256 ERC1Q8IUD2 1116 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 TANGO6Q9C0B7 1094 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms