RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 LTKP29376 864 aa29.4■■■□□ 2.3
LDB1-201ENST00000361198 ADGRB2O60241 1585 aa29.39■■■□□ 2.3
LDB1-201ENST00000361198 CPSF1Q10570 1443 aaKnown RBP29.38■■■□□ 2.29
LDB1-201ENST00000361198 NCBP3Q53F19 620 aaKnown RBP29.37■■■□□ 2.29
LDB1-201ENST00000361198 NUDT16Q96DE0 195 aaKnown RBP29.37■■■□□ 2.29
LDB1-201ENST00000361198 PNPLA6Q8IY17 1366 aa29.37■■■□□ 2.29
LDB1-201ENST00000361198 PLEKHF1Q96S99 279 aa29.37■■■□□ 2.29
LDB1-201ENST00000361198 NCKAP5LQ9HCH0 1330 aa29.36■■■□□ 2.29
LDB1-201ENST00000361198 ROBO2Q9HCK4 1378 aa29.35■■■□□ 2.29
LDB1-201ENST00000361198 FBLN1P23142 703 aa29.35■■■□□ 2.29
LDB1-201ENST00000361198 PLEKHG1Q9ULL1 1385 aa29.35■■■□□ 2.29
LDB1-201ENST00000361198 C3P01024 1663 aa29.34■■■□□ 2.29
LDB1-201ENST00000361198 EDC4Q6P2E9 1401 aaKnown RBP29.33■■■□□ 2.29
LDB1-201ENST00000361198 DIAPH1O60610 1272 aaKnown RBP29.33■■■□□ 2.29
LDB1-201ENST00000361198 CCDC61Q9Y6R9 512 aa29.33■■■□□ 2.29
LDB1-201ENST00000361198 PDE4AP27815 886 aa29.33■■■□□ 2.29
LDB1-201ENST00000361198 BACH2Q9BYV9 841 aa29.32■■■□□ 2.28
LDB1-201ENST00000361198 PLPPR3Q6T4P5 718 aa29.32■■■□□ 2.28
LDB1-201ENST00000361198 POLKQ9UBT6 870 aa29.31■■■□□ 2.28
LDB1-201ENST00000361198 ZBTB47Q9UFB7 747 aaPredicted RBP29.31■■■□□ 2.28
LDB1-201ENST00000361198 CDC42BPGQ6DT37 1551 aa29.29■■■□□ 2.28
LDB1-201ENST00000361198 TMPOP42166 694 aaKnown RBP29.29■■■□□ 2.28
LDB1-201ENST00000361198 NME9Q86XW9 330 aa29.29■■■□□ 2.28
LDB1-201ENST00000361198 PRR36Q9H6K5 1346 aa29.28■■■□□ 2.28
LDB1-201ENST00000361198 MAP2P11137 1827 aaKnown RBP29.28■■■□□ 2.28
LDB1-201ENST00000361198 KDM2BQ8NHM5 1336 aa29.28■■■□□ 2.28
LDB1-201ENST00000361198 PPM1GO15355 546 aaPredicted RBP29.28■■■□□ 2.28
LDB1-201ENST00000361198 SLC26A8Q96RN1 970 aa29.28■■■□□ 2.28
LDB1-201ENST00000361198 MAPK8IP3Q9UPT6 1336 aa29.27■■■□□ 2.28
LDB1-201ENST00000361198 FER1L4A9Z1Z3 1794 aa29.27■■■□□ 2.28
LDB1-201ENST00000361198 EID1Q9Y6B2 187 aa29.27■■■□□ 2.28
LDB1-201ENST00000361198 RARSP54136 660 aaKnown RBP29.26■■■□□ 2.27
LDB1-201ENST00000361198 ZRANB1Q9UGI0 708 aa29.26■■■□□ 2.27
LDB1-201ENST00000361198 MYH16Q9H6N6 1097 aa29.25■■■□□ 2.27
LDB1-201ENST00000361198 MON2Q7Z3U7 1717 aa29.25■■■□□ 2.27
LDB1-201ENST00000361198 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.25■■■□□ 2.27
LDB1-201ENST00000361198 TRHP20396 242 aaPredicted RBP29.25■■■□□ 2.27
LDB1-201ENST00000361198 TRIM35Q9UPQ4 493 aa29.24■■■□□ 2.27
LDB1-201ENST00000361198 PDE3AQ14432 1141 aa29.23■■■□□ 2.27
LDB1-201ENST00000361198 SKAP1Q86WV1 359 aa29.23■■■□□ 2.27
LDB1-201ENST00000361198 PTPRUQ92729 1446 aa29.23■■■□□ 2.27
LDB1-201ENST00000361198 SLIT1O75093 1534 aa29.23■■■□□ 2.27
LDB1-201ENST00000361198 AKAP12Q02952 1782 aa29.22■■■□□ 2.27
LDB1-201ENST00000361198 ARHGAP23Q9P227 1491 aa29.22■■■□□ 2.27
LDB1-201ENST00000361198 EMILIN1Q9Y6C2 1016 aa29.22■■■□□ 2.27
LDB1-201ENST00000361198 CENPQQ7L2Z9 268 aaPredicted RBP29.22■■■□□ 2.27
LDB1-201ENST00000361198 BCL11AQ9H165 835 aa29.22■■■□□ 2.27
LDB1-201ENST00000361198 CANXP27824 592 aaKnown RBP29.21■■■□□ 2.27
LDB1-201ENST00000361198 ITSN1Q15811 1721 aa29.2■■■□□ 2.26
LDB1-201ENST00000361198 FCHSD2O94868 740 aa29.2■■■□□ 2.26
LDB1-201ENST00000361198 FRAT1Q92837 279 aaPredicted RBP29.2■■■□□ 2.26
LDB1-201ENST00000361198 ZNF692Q9BU19 519 aaPredicted RBP29.2■■■□□ 2.26
LDB1-201ENST00000361198 PNNQ9H307 717 aaKnown RBP29.2■■■□□ 2.26
LDB1-201ENST00000361198 RIPK4P57078 832 aa29.19■■■□□ 2.26
LDB1-201ENST00000361198 COG3Q96JB2 828 aa29.19■■■□□ 2.26
LDB1-201ENST00000361198 PANK1Q8TE04 598 aa29.18■■■□□ 2.26
LDB1-201ENST00000361198 TSR2Q969E8 191 aaKnown RBP29.18■■■□□ 2.26
LDB1-201ENST00000361198 LRRC7Q96NW7 1537 aa29.18■■■□□ 2.26
LDB1-201ENST00000361198 BCL2L13Q9BXK5 485 aa29.17■■■□□ 2.26
LDB1-201ENST00000361198 AATKQ6ZMQ8 1374 aa29.17■■■□□ 2.26
LDB1-201ENST00000361198 NUTM2FA1L443 756 aa29.17■■■□□ 2.26
LDB1-201ENST00000361198 RSPH6AQ9H0K4 717 aa29.17■■■□□ 2.26
LDB1-201ENST00000361198 AMOTL2Q9Y2J4 779 aa29.16■■■□□ 2.26
LDB1-201ENST00000361198 THEMISQ8N1K5 641 aaPredicted RBP29.15■■■□□ 2.26
LDB1-201ENST00000361198 COG6Q9Y2V7 657 aa29.15■■■□□ 2.26
LDB1-201ENST00000361198 PRKAR2BP31323 418 aa29.15■■■□□ 2.26
LDB1-201ENST00000361198 TBX22Q9Y458 520 aa29.15■■■□□ 2.26
LDB1-201ENST00000361198 NBR1Q14596 966 aa29.13■■■□□ 2.25
LDB1-201ENST00000361198 CDK12Q9NYV4 1490 aaPredicted RBP29.13■■■□□ 2.25
LDB1-201ENST00000361198 IL13P35225 146 aa29.13■■■□□ 2.25
LDB1-201ENST00000361198 RRS1Q15050 365 aaKnown RBP29.13■■■□□ 2.25
LDB1-201ENST00000361198 TOPAZ1Q8N9V7 1692 aa29.12■■■□□ 2.25
LDB1-201ENST00000361198 ACEP12821 1306 aa29.12■■■□□ 2.25
LDB1-201ENST00000361198 IL16Q14005 1332 aa29.12■■■□□ 2.25
LDB1-201ENST00000361198 HMOX1P09601 288 aa29.11■■■□□ 2.25
LDB1-201ENST00000361198 NPM2Q86SE8 214 aaKnown RBP29.11■■■□□ 2.25
LDB1-201ENST00000361198 PLEKHG3A1L390 1219 aa29.1■■■□□ 2.25
LDB1-201ENST00000361198 TNNQ9UQP3 1299 aa29.1■■■□□ 2.25
LDB1-201ENST00000361198 DEKP35659 375 aaKnown RBP29.1■■■□□ 2.25
LDB1-201ENST00000361198 EXOSC9Q06265 439 aaKnown RBP29.1■■■□□ 2.25
LDB1-201ENST00000361198 CT47B1P0C2W7 299 aaPredicted RBP29.09■■■□□ 2.25
LDB1-201ENST00000361198 TTC21BQ7Z4L5 1316 aa29.09■■■□□ 2.25
LDB1-201ENST00000361198 RLBP1P12271 317 aa29.08■■■□□ 2.25
LDB1-201ENST00000361198 CLUAP1Q96AJ1 413 aa29.08■■■□□ 2.25
LDB1-201ENST00000361198 PHACTR3Q96KR7 559 aa29.08■■■□□ 2.25
LDB1-201ENST00000361198 NRKQ7Z2Y5 1582 aa29.07■■■□□ 2.24
LDB1-201ENST00000361198 NEFMP07197 916 aa29.07■■■□□ 2.24
LDB1-201ENST00000361198 PTCH1Q13635 1447 aa29.06■■■□□ 2.24
LDB1-201ENST00000361198 USP6P35125 1406 aa29.04■■■□□ 2.24
LDB1-201ENST00000361198 IGHDP01880 384 aa29.04■■■□□ 2.24
LDB1-201ENST00000361198 DIP2AQ14689 1571 aa29.03■■■□□ 2.24
LDB1-201ENST00000361198 NFE2L2Q16236 605 aa29.03■■■□□ 2.24
LDB1-201ENST00000361198 OVOS2A0A0J9YW53 1432 aa29.01■■■□□ 2.23
LDB1-201ENST00000361198 OVOS2Q6IE36 1432 aa29.01■■■□□ 2.23
LDB1-201ENST00000361198 SMC4Q9NTJ3 1288 aa29■■■□□ 2.23
LDB1-201ENST00000361198 ZKSCAN2Q63HK3 967 aa28.99■■■□□ 2.23
LDB1-201ENST00000361198 SSH1Q8WYL5 1049 aa28.99■■■□□ 2.23
LDB1-201ENST00000361198 PMFBP1Q8TBY8 1022 aa28.99■■■□□ 2.23
LDB1-201ENST00000361198 CEP170BQ9Y4F5 1589 aaPredicted RBP28.98■■■□□ 2.23
LDB1-201ENST00000361198 SSH2Q76I76 1423 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms