RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ESF1Q9H501 851 aaKnown RBP26.91■■□□□ 1.9
CCDC88B-203ENST00000359902 TMPOP42166 694 aaKnown RBP26.9■■□□□ 1.9
CCDC88B-203ENST00000359902 KIF20BQ96Q89 1820 aa26.9■■□□□ 1.9
CCDC88B-203ENST00000359902 IGHDP01880 384 aa26.9■■□□□ 1.9
CCDC88B-203ENST00000359902 ATP7BP35670 1465 aa26.9■■□□□ 1.9
CCDC88B-203ENST00000359902 CLUAP1Q96AJ1 413 aa26.89■■□□□ 1.9
CCDC88B-203ENST00000359902 METP08581 1390 aa26.89■■□□□ 1.9
CCDC88B-203ENST00000359902 DIAPH1O60610 1272 aaKnown RBP26.89■■□□□ 1.89
CCDC88B-203ENST00000359902 TRIM35Q9UPQ4 493 aa26.88■■□□□ 1.89
CCDC88B-203ENST00000359902 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.88■■□□□ 1.89
CCDC88B-203ENST00000359902 MAPK8IP3Q9UPT6 1336 aa26.86■■□□□ 1.89
CCDC88B-203ENST00000359902 WASLO00401 505 aaPredicted RBP26.85■■□□□ 1.89
CCDC88B-203ENST00000359902 BCL2L13Q9BXK5 485 aa26.85■■□□□ 1.89
CCDC88B-203ENST00000359902 RLBP1P12271 317 aa26.84■■□□□ 1.89
CCDC88B-203ENST00000359902 TXNDC2Q86VQ3 553 aa26.84■■□□□ 1.89
CCDC88B-203ENST00000359902 TNNQ9UQP3 1299 aa26.84■■□□□ 1.89
CCDC88B-203ENST00000359902 FAM161AQ3B820 660 aa26.83■■□□□ 1.89
CCDC88B-203ENST00000359902 RGS3P49796 1198 aa26.83■■□□□ 1.89
CCDC88B-203ENST00000359902 TSR2Q969E8 191 aaKnown RBP26.83■■□□□ 1.89
CCDC88B-203ENST00000359902 POLKQ9UBT6 870 aa26.83■■□□□ 1.89
CCDC88B-203ENST00000359902 CT47B1P0C2W7 299 aaPredicted RBP26.82■■□□□ 1.88
CCDC88B-203ENST00000359902 HDGFP51858 240 aaKnown RBP26.82■■□□□ 1.88
CCDC88B-203ENST00000359902 AAMPQ13685 434 aa26.82■■□□□ 1.88
CCDC88B-203ENST00000359902 C8orf34Q49A92 452 aa26.82■■□□□ 1.88
CCDC88B-203ENST00000359902 CPSF1Q10570 1443 aaKnown RBP26.82■■□□□ 1.88
CCDC88B-203ENST00000359902 PNNQ9H307 717 aaKnown RBP26.82■■□□□ 1.88
CCDC88B-203ENST00000359902 FBLN1P23142 703 aa26.81■■□□□ 1.88
CCDC88B-203ENST00000359902 SIRT1Q96EB6 747 aa26.81■■□□□ 1.88
CCDC88B-203ENST00000359902 TNRQ92752 1358 aa26.81■■□□□ 1.88
CCDC88B-203ENST00000359902 IL16Q14005 1332 aa26.8■■□□□ 1.88
CCDC88B-203ENST00000359902 RIPK4P57078 832 aa26.8■■□□□ 1.88
CCDC88B-203ENST00000359902 PPIP5K1Q6PFW1 1433 aa26.8■■□□□ 1.88
CCDC88B-203ENST00000359902 FAM135BQ49AJ0 1406 aa26.79■■□□□ 1.88
CCDC88B-203ENST00000359902 FCHSD2O94868 740 aa26.79■■□□□ 1.88
CCDC88B-203ENST00000359902 EXOSC9Q06265 439 aaKnown RBP26.78■■□□□ 1.88
CCDC88B-203ENST00000359902 CDC42BPGQ6DT37 1551 aa26.78■■□□□ 1.88
CCDC88B-203ENST00000359902 TECPR2O15040 1411 aa26.78■■□□□ 1.88
CCDC88B-203ENST00000359902 EDC4Q6P2E9 1401 aaKnown RBP26.78■■□□□ 1.88
CCDC88B-203ENST00000359902 PPM1GO15355 546 aaPredicted RBP26.77■■□□□ 1.88
CCDC88B-203ENST00000359902 NUDT16Q96DE0 195 aaKnown RBP26.77■■□□□ 1.88
CCDC88B-203ENST00000359902 KNDC1Q76NI1 1749 aa26.76■■□□□ 1.87
CCDC88B-203ENST00000359902 TMEM2Q9UHN6 1383 aa26.75■■□□□ 1.87
CCDC88B-203ENST00000359902 PCDHB15Q9Y5E8 787 aa26.75■■□□□ 1.87
CCDC88B-203ENST00000359902 RSPH6AQ9H0K4 717 aa26.74■■□□□ 1.87
CCDC88B-203ENST00000359902 ZKSCAN2Q63HK3 967 aa26.74■■□□□ 1.87
CCDC88B-203ENST00000359902 PMFBP1Q8TBY8 1022 aa26.74■■□□□ 1.87
CCDC88B-203ENST00000359902 NME9Q86XW9 330 aa26.73■■□□□ 1.87
CCDC88B-203ENST00000359902 CCDC61Q9Y6R9 512 aa26.73■■□□□ 1.87
CCDC88B-203ENST00000359902 MAP2P11137 1827 aaKnown RBP26.73■■□□□ 1.87
CCDC88B-203ENST00000359902 NBR1Q14596 966 aa26.73■■□□□ 1.87
CCDC88B-203ENST00000359902 NCKAP5LQ9HCH0 1330 aa26.73■■□□□ 1.87
CCDC88B-203ENST00000359902 LRRC7Q96NW7 1537 aa26.73■■□□□ 1.87
CCDC88B-203ENST00000359902 UBR1Q8IWV7 1749 aa26.72■■□□□ 1.87
CCDC88B-203ENST00000359902 PRKAR2BP31323 418 aa26.72■■□□□ 1.87
CCDC88B-203ENST00000359902 CPS1P31327 1500 aa26.72■■□□□ 1.87
CCDC88B-203ENST00000359902 DDRGK1Q96HY6 314 aa26.71■■□□□ 1.87
CCDC88B-203ENST00000359902 ZRANB1Q9UGI0 708 aa26.71■■□□□ 1.87
CCDC88B-203ENST00000359902 MVPQ14764 893 aaKnown RBP26.71■■□□□ 1.87
CCDC88B-203ENST00000359902 SMC4Q9NTJ3 1288 aa26.71■■□□□ 1.87
CCDC88B-203ENST00000359902 EMILIN1Q9Y6C2 1016 aa26.71■■□□□ 1.87
CCDC88B-203ENST00000359902 DZIP1LQ8IYY4 767 aaKnown RBP26.7■■□□□ 1.86
CCDC88B-203ENST00000359902 SSH1Q8WYL5 1049 aa26.7■■□□□ 1.86
CCDC88B-203ENST00000359902 AATKQ6ZMQ8 1374 aa26.68■■□□□ 1.86
CCDC88B-203ENST00000359902 IL13P35225 146 aa26.67■■□□□ 1.86
CCDC88B-203ENST00000359902 FTSJ3Q8IY81 847 aaKnown RBP26.67■■□□□ 1.86
CCDC88B-203ENST00000359902 ADAMTS13Q76LX8 1427 aa26.67■■□□□ 1.86
CCDC88B-203ENST00000359902 ROBO2Q9HCK4 1378 aa26.67■■□□□ 1.86
CCDC88B-203ENST00000359902 PHACTR3Q96KR7 559 aa26.66■■□□□ 1.86
CCDC88B-203ENST00000359902 PRR36Q9H6K5 1346 aa26.66■■□□□ 1.86
CCDC88B-203ENST00000359902 MON2Q7Z3U7 1717 aa26.66■■□□□ 1.86
CCDC88B-203ENST00000359902 NEFMP07197 916 aa26.65■■□□□ 1.86
CCDC88B-203ENST00000359902 HMOX1P09601 288 aa26.65■■□□□ 1.86
CCDC88B-203ENST00000359902 TRIM27P14373 513 aa26.65■■□□□ 1.86
CCDC88B-203ENST00000359902 COG3Q96JB2 828 aa26.65■■□□□ 1.86
CCDC88B-203ENST00000359902 CDK12Q9NYV4 1490 aaPredicted RBP26.65■■□□□ 1.86
CCDC88B-203ENST00000359902 ZNF692Q9BU19 519 aaPredicted RBP26.64■■□□□ 1.86
CCDC88B-203ENST00000359902 RWDD1Q9H446 243 aaPredicted RBP26.64■■□□□ 1.86
CCDC88B-203ENST00000359902 LTKP29376 864 aa26.64■■□□□ 1.85
CCDC88B-203ENST00000359902 NFE2L2Q16236 605 aa26.64■■□□□ 1.85
CCDC88B-203ENST00000359902 AKAP12Q02952 1782 aa26.62■■□□□ 1.85
CCDC88B-203ENST00000359902 ATF7IPQ6VMQ6 1270 aa26.62■■□□□ 1.85
CCDC88B-203ENST00000359902 NOB1Q9ULX3 412 aaKnown RBP26.62■■□□□ 1.85
CCDC88B-203ENST00000359902 PLEKHG1Q9ULL1 1385 aa26.61■■□□□ 1.85
CCDC88B-203ENST00000359902 C3P01024 1663 aa26.6■■□□□ 1.85
CCDC88B-203ENST00000359902 RRS1Q15050 365 aaKnown RBP26.59■■□□□ 1.85
CCDC88B-203ENST00000359902 PDZRN3Q9UPQ7 1066 aa26.59■■□□□ 1.85
CCDC88B-203ENST00000359902 ITSN1Q15811 1721 aa26.59■■□□□ 1.85
CCDC88B-203ENST00000359902 ALDH1L2Q3SY69 923 aa26.58■■□□□ 1.85
CCDC88B-203ENST00000359902 CEBPAP49715 358 aaPredicted RBP26.57■■□□□ 1.84
CCDC88B-203ENST00000359902 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.57■■□□□ 1.84
CCDC88B-203ENST00000359902 VIRMAQ69YN4 1812 aaKnown RBP26.57■■□□□ 1.84
CCDC88B-203ENST00000359902 DDX19BQ9UMR2 479 aa26.57■■□□□ 1.84
CCDC88B-203ENST00000359902 KIF16BQ96L93 1317 aa26.56■■□□□ 1.84
CCDC88B-203ENST00000359902 LAS1LQ9Y4W2 734 aaKnown RBP26.56■■□□□ 1.84
CCDC88B-203ENST00000359902 ITPRIPQ8IWB1 547 aa26.55■■□□□ 1.84
CCDC88B-203ENST00000359902 THUMPD2Q9BTF0 503 aaKnown RBP26.55■■□□□ 1.84
CCDC88B-203ENST00000359902 IPO8O15397 1037 aaKnown RBP26.55■■□□□ 1.84
CCDC88B-203ENST00000359902 CALD1Q05682 793 aaKnown RBP26.55■■□□□ 1.84
CCDC88B-203ENST00000359902 TMEM57Q8N5G2 664 aa26.54■■□□□ 1.84
CCDC88B-203ENST00000359902 ZNF428Q96B54 188 aa26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms